RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 NUP98P52948 1817 aa18.44■□□□□ 0.54
HMGA1-202ENST00000347617 TULP2O00295 520 aa18.43■□□□□ 0.54
HMGA1-202ENST00000347617 CYP2C19P33261 490 aa18.43■□□□□ 0.54
HMGA1-202ENST00000347617 C11orf57Q6ZUT1 292 aaPredicted RBP18.43■□□□□ 0.54
HMGA1-202ENST00000347617 CCAR1Q8IX12 1150 aaKnown RBP18.43■□□□□ 0.54
HMGA1-202ENST00000347617 SMARCC2Q8TAQ2 1214 aa18.43■□□□□ 0.54
HMGA1-202ENST00000347617 BRF1Q92994 677 aa18.43■□□□□ 0.54
HMGA1-202ENST00000347617 SIL1Q9H173 461 aa18.43■□□□□ 0.54
HMGA1-202ENST00000347617 COL5A3P25940 1745 aaPredicted RBP18.43■□□□□ 0.54
HMGA1-202ENST00000347617 CNTNAP4Q9C0A0 1308 aa18.43■□□□□ 0.54
HMGA1-202ENST00000347617 USP27XA6NNY8 438 aa18.42■□□□□ 0.54
HMGA1-202ENST00000347617 EYA2O00167 538 aa18.42■□□□□ 0.54
HMGA1-202ENST00000347617 HSP90B1P14625 803 aaKnown RBP18.42■□□□□ 0.54
HMGA1-202ENST00000347617 PARP10Q53GL7 1025 aa18.42■□□□□ 0.54
HMGA1-202ENST00000347617 CCDC93Q567U6 631 aa18.42■□□□□ 0.54
HMGA1-202ENST00000347617 CLEC4GQ6UXB4 293 aa18.42■□□□□ 0.54
HMGA1-202ENST00000347617 DHX40Q8IX18 779 aaKnown RBP18.42■□□□□ 0.54
HMGA1-202ENST00000347617 KLHDC4Q8TBB5 520 aa18.42■□□□□ 0.54
HMGA1-202ENST00000347617 NHSQ6T4R5 1651 aa18.42■□□□□ 0.54
HMGA1-202ENST00000347617 PHLPP2Q6ZVD8 1323 aa18.42■□□□□ 0.54
HMGA1-202ENST00000347617 HMGB1P09429 215 aaKnown RBP18.42■□□□□ 0.54
HMGA1-202ENST00000347617 CCDC57Q2TAC2 916 aa18.42■□□□□ 0.54
HMGA1-202ENST00000347617 TNNI3KQ59H18 835 aa18.42■□□□□ 0.54
HMGA1-202ENST00000347617 ATG9AQ7Z3C6 839 aa18.42■□□□□ 0.54
HMGA1-202ENST00000347617 FPGT-TNNI3KV9GXZ4 949 aa18.42■□□□□ 0.54
HMGA1-202ENST00000347617 TBC1D2BQ9UPU7 963 aa18.41■□□□□ 0.54
HMGA1-202ENST00000347617 U3KPZ7 1027 aaPredicted RBP18.41■□□□□ 0.54
HMGA1-202ENST00000347617 CAMTA2O94983 1202 aa18.4■□□□□ 0.54
HMGA1-202ENST00000347617 ATP5JP18859 108 aa18.4■□□□□ 0.54
HMGA1-202ENST00000347617 TFCP2Q12800 502 aa18.4■□□□□ 0.54
HMGA1-202ENST00000347617 ENGASEQ8NFI3 743 aa18.4■□□□□ 0.54
HMGA1-202ENST00000347617 FAM89AQ96GI7 184 aa18.4■□□□□ 0.54
HMGA1-202ENST00000347617 FSD1Q9BTV5 496 aa18.4■□□□□ 0.54
HMGA1-202ENST00000347617 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.4■□□□□ 0.54
HMGA1-202ENST00000347617 A0A0G2JS52 829 aa18.4■□□□□ 0.54
HMGA1-202ENST00000347617 PDE8AO60658 829 aa18.4■□□□□ 0.54
HMGA1-202ENST00000347617 IRX5P78411 483 aaPredicted RBP18.4■□□□□ 0.54
HMGA1-202ENST00000347617 TXLNBQ8N3L3 684 aa18.4■□□□□ 0.54
HMGA1-202ENST00000347617 FAM227BQ96M60 508 aa18.4■□□□□ 0.54
HMGA1-202ENST00000347617 NEK1Q96PY6 1258 aa18.4■□□□□ 0.54
HMGA1-202ENST00000347617 ZNF652Q9Y2D9 606 aa18.4■□□□□ 0.54
HMGA1-202ENST00000347617 MYH14Q7Z406 1995 aaKnown RBP18.4■□□□□ 0.54
HMGA1-202ENST00000347617 PPP1R13BQ96KQ4 1090 aa18.39■□□□□ 0.53
HMGA1-202ENST00000347617 CCDC8Q9H0W5 538 aaPredicted RBP18.39■□□□□ 0.53
HMGA1-202ENST00000347617 TRMT112Q9UI30 125 aaKnown RBP18.39■□□□□ 0.53
HMGA1-202ENST00000347617 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.39■□□□□ 0.53
HMGA1-202ENST00000347617 LAMA4Q16363 1823 aa18.38■□□□□ 0.53
HMGA1-202ENST00000347617 A0A1W2PQ27 194 aa18.38■□□□□ 0.53
HMGA1-202ENST00000347617 A0A1W2PQ64 194 aa18.38■□□□□ 0.53
HMGA1-202ENST00000347617 A0A1W2PQD8 194 aa18.38■□□□□ 0.53
HMGA1-202ENST00000347617 PFKFB2O60825 505 aa18.38■□□□□ 0.53
HMGA1-202ENST00000347617 SFPQP23246 707 aaKnown RBP eCLIP18.38■□□□□ 0.53
HMGA1-202ENST00000347617 ADD1P35611 737 aaKnown RBP18.38■□□□□ 0.53
HMGA1-202ENST00000347617 IFIT5Q13325 482 aaKnown RBP18.38■□□□□ 0.53
HMGA1-202ENST00000347617 ZRSR1Q15695 479 aaKnown RBP18.38■□□□□ 0.53
HMGA1-202ENST00000347617 TMCO3Q6UWJ1 677 aa18.38■□□□□ 0.53
HMGA1-202ENST00000347617 FCHSD1Q86WN1 690 aa18.38■□□□□ 0.53
HMGA1-202ENST00000347617 TTLL11Q8NHH1 800 aa18.38■□□□□ 0.53
HMGA1-202ENST00000347617 ZNF446Q9NWS9 450 aa18.38■□□□□ 0.53
HMGA1-202ENST00000347617 FHOD1Q9Y613 1164 aa18.38■□□□□ 0.53
HMGA1-202ENST00000347617 V9GYY5 206 aaPredicted RBP18.38■□□□□ 0.53
HMGA1-202ENST00000347617 A0A0D9SFI3 127 aa18.37■□□□□ 0.53
HMGA1-202ENST00000347617 IRS4O14654 1257 aaPredicted RBP18.37■□□□□ 0.53
HMGA1-202ENST00000347617 MYO1BO43795 1136 aa18.37■□□□□ 0.53
HMGA1-202ENST00000347617 GPTP24298 496 aa18.37■□□□□ 0.53
HMGA1-202ENST00000347617 TRMT1Q9NXH9 659 aaKnown RBP18.37■□□□□ 0.53
HMGA1-202ENST00000347617 TAF5LO75529 589 aa18.37■□□□□ 0.53
HMGA1-202ENST00000347617 PNMA6AP0CW24 399 aaPredicted RBP18.37■□□□□ 0.53
HMGA1-202ENST00000347617 HMGB2P26583 209 aaKnown RBP18.37■□□□□ 0.53
HMGA1-202ENST00000347617 CTSWP56202 376 aa18.37■□□□□ 0.53
HMGA1-202ENST00000347617 GPS2Q13227 327 aa18.37■□□□□ 0.53
HMGA1-202ENST00000347617 ARID5BQ14865 1188 aa18.37■□□□□ 0.53
HMGA1-202ENST00000347617 MUM1L1Q5H9M0 696 aa18.37■□□□□ 0.53
HMGA1-202ENST00000347617 SEPT12Q8IYM1 358 aa18.37■□□□□ 0.53
HMGA1-202ENST00000347617 AOPEPQ8N6M6 819 aa18.37■□□□□ 0.53
HMGA1-202ENST00000347617 LINC00116Q8NCU8 138 aa18.37■□□□□ 0.53
HMGA1-202ENST00000347617 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.37■□□□□ 0.53
HMGA1-202ENST00000347617 DBNLQ9UJU6 430 aaKnown RBP18.37■□□□□ 0.53
HMGA1-202ENST00000347617 AKAP2Q9Y2D5 859 aa18.37■□□□□ 0.53
HMGA1-202ENST00000347617 BTAF1O14981 1849 aa18.36■□□□□ 0.53
HMGA1-202ENST00000347617 ZRANB2O95218 330 aaKnown RBP eCLIP18.36■□□□□ 0.53
HMGA1-202ENST00000347617 CLCN6P51797 869 aa18.36■□□□□ 0.53
HMGA1-202ENST00000347617 ETF1P62495 437 aaKnown RBP18.36■□□□□ 0.53
HMGA1-202ENST00000347617 E4F1Q66K89 784 aaPredicted RBP18.36■□□□□ 0.53
HMGA1-202ENST00000347617 MRPS27Q92552 414 aaKnown RBP18.36■□□□□ 0.53
HMGA1-202ENST00000347617 UTP14AQ9BVJ6 771 aaKnown RBP18.36■□□□□ 0.53
HMGA1-202ENST00000347617 QTRT2Q9H974 415 aaKnown RBP18.36■□□□□ 0.53
HMGA1-202ENST00000347617 UBN2Q6ZU65 1347 aa18.36■□□□□ 0.53
HMGA1-202ENST00000347617 RPS6KA4O75676 772 aa18.35■□□□□ 0.53
HMGA1-202ENST00000347617 STK3Q13188 491 aa18.35■□□□□ 0.53
HMGA1-202ENST00000347617 NBPF11Q86T75 865 aa18.35■□□□□ 0.53
HMGA1-202ENST00000347617 RGS22Q8NE09 1264 aa18.35■□□□□ 0.53
HMGA1-202ENST00000347617 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.35■□□□□ 0.53
HMGA1-202ENST00000347617 UBXN4Q92575 508 aa18.35■□□□□ 0.53
HMGA1-202ENST00000347617 CEP126Q9P2H0 1117 aa18.35■□□□□ 0.53
HMGA1-202ENST00000347617 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.35■□□□□ 0.53
HMGA1-202ENST00000347617 SH3TC1Q8TE82 1336 aa18.35■□□□□ 0.53
HMGA1-202ENST00000347617 ANKRD18BA2A2Z9 1011 aa18.35■□□□□ 0.53
HMGA1-202ENST00000347617 EFCAB8A8MWE9 144 aa18.35■□□□□ 0.53
HMGA1-202ENST00000347617 JAK2O60674 1132 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms