RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 CTAGE15A4D2H0 777 aa21.17■□□□□ 0.98
SMPD1-201ENST00000342245 YEATS4O95619 227 aa21.17■□□□□ 0.98
SMPD1-201ENST00000342245 CTAGE8P0CG41 777 aa21.17■□□□□ 0.98
SMPD1-201ENST00000342245 CTAGE6Q86UF2 777 aa21.17■□□□□ 0.98
SMPD1-201ENST00000342245 CTAGE4Q8IX94 777 aa21.17■□□□□ 0.98
SMPD1-201ENST00000342245 PHACTR2O75167 634 aa21.17■□□□□ 0.98
SMPD1-201ENST00000342245 ATP1A3P13637 1013 aa21.17■□□□□ 0.98
SMPD1-201ENST00000342245 RDXP35241 583 aaKnown RBP21.17■□□□□ 0.98
SMPD1-201ENST00000342245 OS9Q13438 667 aaPredicted RBP21.17■□□□□ 0.98
SMPD1-201ENST00000342245 SF3A1Q15459 793 aaKnown RBP21.17■□□□□ 0.98
SMPD1-201ENST00000342245 TOGARAM2Q6ZUX3 1019 aa21.17■□□□□ 0.98
SMPD1-201ENST00000342245 TCEANC2Q96MN5 208 aa21.17■□□□□ 0.98
SMPD1-201ENST00000342245 NEK1Q96PY6 1258 aa21.17■□□□□ 0.98
SMPD1-201ENST00000342245 PUF60Q9UHX1 559 aaKnown RBP21.17■□□□□ 0.98
SMPD1-201ENST00000342245 A2ML1A8K2U0 1454 aa21.17■□□□□ 0.98
SMPD1-201ENST00000342245 A0A1B0GVL5 298 aa21.16■□□□□ 0.98
SMPD1-201ENST00000342245 VSNL1P62760 191 aa21.16■□□□□ 0.98
SMPD1-201ENST00000342245 ARHGEF25Q86VW2 580 aa21.16■□□□□ 0.98
SMPD1-201ENST00000342245 NAA15Q9BXJ9 866 aaKnown RBP21.16■□□□□ 0.98
SMPD1-201ENST00000342245 NEDD4P46934 1319 aa21.16■□□□□ 0.98
SMPD1-201ENST00000342245 MED23Q9ULK4 1368 aa21.16■□□□□ 0.98
SMPD1-201ENST00000342245 TSPOAP1O95153 1857 aa21.16■□□□□ 0.98
SMPD1-201ENST00000342245 GOLIM4O00461 696 aa21.16■□□□□ 0.98
SMPD1-201ENST00000342245 GPTP24298 496 aa21.16■□□□□ 0.98
SMPD1-201ENST00000342245 USPL1Q5W0Q7 1092 aa21.16■□□□□ 0.98
SMPD1-201ENST00000342245 CDHR2Q9BYE9 1310 aa21.16■□□□□ 0.98
SMPD1-201ENST00000342245 CTAGE9A4FU28 777 aa21.15■□□□□ 0.98
SMPD1-201ENST00000342245 ALDH1L1O75891 902 aa21.15■□□□□ 0.98
SMPD1-201ENST00000342245 SYF2O95926 243 aaKnown RBP21.15■□□□□ 0.98
SMPD1-201ENST00000342245 MAP2K1Q02750 393 aaPredicted RBP21.15■□□□□ 0.98
SMPD1-201ENST00000342245 C11orf91Q3C1V1 193 aa21.15■□□□□ 0.98
SMPD1-201ENST00000342245 OLFM4Q6UX06 510 aa21.15■□□□□ 0.98
SMPD1-201ENST00000342245 DPF2Q92785 391 aa21.15■□□□□ 0.98
SMPD1-201ENST00000342245 MIEF2Q96C03 454 aa21.15■□□□□ 0.98
SMPD1-201ENST00000342245 FAM212AQ96EL1 285 aa21.15■□□□□ 0.98
SMPD1-201ENST00000342245 FTOQ9C0B1 505 aaKnown RBP eCLIP21.15■□□□□ 0.98
SMPD1-201ENST00000342245 ZSWIM4Q9H7M6 989 aa21.15■□□□□ 0.98
SMPD1-201ENST00000342245 TUBE1Q9UJT0 475 aa21.15■□□□□ 0.98
SMPD1-201ENST00000342245 LRRIQ3A6PVS8 624 aaPredicted RBP21.15■□□□□ 0.98
SMPD1-201ENST00000342245 AMOTL1Q8IY63 956 aa21.15■□□□□ 0.98
SMPD1-201ENST00000342245 PLEKHA4Q9H4M7 779 aa21.15■□□□□ 0.98
SMPD1-201ENST00000342245 CHUKO15111 745 aa21.14■□□□□ 0.98
SMPD1-201ENST00000342245 ZNF202O95125 648 aa21.14■□□□□ 0.98
SMPD1-201ENST00000342245 STK38Q15208 465 aa21.14■□□□□ 0.98
SMPD1-201ENST00000342245 SPECC1LQ69YQ0 1117 aa21.14■□□□□ 0.98
SMPD1-201ENST00000342245 B4GALNT4Q76KP1 1039 aa21.14■□□□□ 0.98
SMPD1-201ENST00000342245 JMYQ8N9B5 988 aa21.14■□□□□ 0.98
SMPD1-201ENST00000342245 NSUN7Q8NE18 718 aaKnown RBP21.14■□□□□ 0.98
SMPD1-201ENST00000342245 ZRANB1Q9UGI0 708 aa21.14■□□□□ 0.98
SMPD1-201ENST00000342245 HMGB1P09429 215 aaKnown RBP21.14■□□□□ 0.97
SMPD1-201ENST00000342245 ELF1P32519 619 aa21.14■□□□□ 0.97
SMPD1-201ENST00000342245 SCRN1Q12765 414 aa21.14■□□□□ 0.97
SMPD1-201ENST00000342245 FBXW10Q5XX13 1052 aa21.14■□□□□ 0.97
SMPD1-201ENST00000342245 Q6ZUG5 572 aa21.14■□□□□ 0.97
SMPD1-201ENST00000342245 TC2NQ8N9U0 490 aa21.14■□□□□ 0.97
SMPD1-201ENST00000342245 LINC00301Q8NCQ3 95 aa21.14■□□□□ 0.97
SMPD1-201ENST00000342245 FAM76AQ8TAV0 307 aa21.14■□□□□ 0.97
SMPD1-201ENST00000342245 FAM227BQ96M60 508 aa21.14■□□□□ 0.97
SMPD1-201ENST00000342245 SUGCTQ9HAC7 445 aa21.14■□□□□ 0.97
SMPD1-201ENST00000342245 CCT5P48643 541 aa21.13■□□□□ 0.97
SMPD1-201ENST00000342245 EIF4A2Q14240 407 aaKnown RBP21.13■□□□□ 0.97
SMPD1-201ENST00000342245 NME9Q86XW9 330 aa21.13■□□□□ 0.97
SMPD1-201ENST00000342245 POLR3EQ9NVU0 708 aa21.13■□□□□ 0.97
SMPD1-201ENST00000342245 MCM8Q9UJA3 840 aa21.13■□□□□ 0.97
SMPD1-201ENST00000342245 BIN1O00499 593 aa21.13■□□□□ 0.97
SMPD1-201ENST00000342245 AMPHP49418 695 aa21.13■□□□□ 0.97
SMPD1-201ENST00000342245 PPFIA1Q13136 1202 aa21.13■□□□□ 0.97
SMPD1-201ENST00000342245 PPP2R5AQ15172 486 aa21.13■□□□□ 0.97
SMPD1-201ENST00000342245 PANX2Q96RD6 677 aa21.13■□□□□ 0.97
SMPD1-201ENST00000342245 CEP170BQ9Y4F5 1589 aaPredicted RBP21.12■□□□□ 0.97
SMPD1-201ENST00000342245 WWC2Q6AWC2 1192 aa21.12■□□□□ 0.97
SMPD1-201ENST00000342245 FMNL3Q8IVF7 1028 aa21.12■□□□□ 0.97
SMPD1-201ENST00000342245 PDILTQ8N807 584 aa21.12■□□□□ 0.97
SMPD1-201ENST00000342245 IGSF22Q8N9C0 903 aa21.12■□□□□ 0.97
SMPD1-201ENST00000342245 CCDC148Q8NFR7 591 aa21.12■□□□□ 0.97
SMPD1-201ENST00000342245 VEZTQ9HBM0 779 aa21.12■□□□□ 0.97
SMPD1-201ENST00000342245 MYO1AQ9UBC5 1043 aa21.12■□□□□ 0.97
SMPD1-201ENST00000342245 NCKAP5LQ9HCH0 1330 aa21.12■□□□□ 0.97
SMPD1-201ENST00000342245 FSBPO95073 299 aa21.12■□□□□ 0.97
SMPD1-201ENST00000342245 RHOXF2BP0C7M4 288 aa21.12■□□□□ 0.97
SMPD1-201ENST00000342245 CMA1P23946 247 aa21.12■□□□□ 0.97
SMPD1-201ENST00000342245 MTX1Q13505 466 aa21.12■□□□□ 0.97
SMPD1-201ENST00000342245 KARSQ15046 597 aaKnown RBP21.12■□□□□ 0.97
SMPD1-201ENST00000342245 RRS1Q15050 365 aaKnown RBP21.12■□□□□ 0.97
SMPD1-201ENST00000342245 RHOXF2Q9BQY4 288 aa21.12■□□□□ 0.97
SMPD1-201ENST00000342245 MIS18AQ9NYP9 233 aa21.12■□□□□ 0.97
SMPD1-201ENST00000342245 DIP2BQ9P265 1576 aa21.11■□□□□ 0.97
SMPD1-201ENST00000342245 PTPDC1A2A3K4 754 aa21.11■□□□□ 0.97
SMPD1-201ENST00000342245 NF2P35240 595 aa21.11■□□□□ 0.97
SMPD1-201ENST00000342245 IRAK1P51617 712 aa21.11■□□□□ 0.97
SMPD1-201ENST00000342245 JPH2Q9BR39 696 aaPredicted RBP21.11■□□□□ 0.97
SMPD1-201ENST00000342245 RGPD1P0DJD0 1748 aa21.11■□□□□ 0.97
SMPD1-201ENST00000342245 SPATA31D1Q6ZQQ2 1576 aa21.11■□□□□ 0.97
SMPD1-201ENST00000342245 SGSM3Q96HU1 749 aa21.11■□□□□ 0.97
SMPD1-201ENST00000342245 C19orf44Q9H6X5 657 aa21.11■□□□□ 0.97
SMPD1-201ENST00000342245 HPCAL4Q9UM19 191 aa21.11■□□□□ 0.97
SMPD1-201ENST00000342245 SPTLC2O15270 562 aa21.1■□□□□ 0.97
SMPD1-201ENST00000342245 IRX1P78414 480 aaPredicted RBP21.1■□□□□ 0.97
SMPD1-201ENST00000342245 TXNDC2Q86VQ3 553 aa21.1■□□□□ 0.97
SMPD1-201ENST00000342245 CLIC6Q96NY7 704 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms