RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 VPS18Q9P253 973 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 TRIP12Q14669 1992 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 WASHC4Q2M389 1173 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 MYO7BQ6PIF6 2116 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 SULT6B1Q6IMI4 303 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 CLASRPQ8N2M8 674 aaKnown RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 FKBP5Q13451 457 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 GJC2Q5T442 439 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 ATP5J2-PTCD1G3V325 749 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 PTCD1O75127 700 aaKnown RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 EPB41L3Q9Y2J2 1087 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 CLTCQ00610 1675 aaKnown RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 LRSAM1Q6UWE0 723 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 TRIM31Q9BZY9 425 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 DNAAF5Q86Y56 855 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 CD2BP2O95400 341 aaKnown RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 SLC39A6Q13433 755 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 RPUSD2Q8IZ73 545 aaKnown RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 MAGED2Q9UNF1 606 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 CTDP1Q9Y5B0 961 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 KIAA0232Q92628 1395 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 TPD52L2O43399 206 aaKnown RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 SKAP2O75563 359 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 TMC6Q7Z403 805 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 PSD4Q8NDX1 1056 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 C7orf57Q8NEG2 295 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 GPHNQ9NQX3 736 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 SEPT7Q16181 437 aaKnown RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 FOXP2O15409 715 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 PPP1R37O75864 691 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 PSMC1P62191 440 aaKnown RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 BRD3Q15059 726 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 API5Q9BZZ5 524 aaKnown RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 LIG3P49916 1009 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 ZSCAN23Q3MJ62 389 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 HNRNPLLQ8WVV9 542 aaKnown RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 ARPP21Q9UBL0 812 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 MCM10Q7L590 875 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 DZIP1LQ8IYY4 767 aaKnown RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 PIAS4Q8N2W9 510 aaPredicted RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 ZBTB21Q9ULJ3 1066 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 CSPG5O95196 566 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 RBBP5Q15291 538 aaKnown RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 FMNL3Q8IVF7 1028 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 TCP11L2Q8N4U5 519 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 TMEM87AQ8NBN3 555 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 NBPF3Q9H094 633 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 DHX16O60231 1041 aaKnown RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 ARMCX6Q7L4S7 300 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 POTEDQ86YR6 584 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 TRIM63Q969Q1 353 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 EXOC6BQ9Y2D4 811 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 USP16Q9Y5T5 823 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 TULP2O00295 520 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 FUT4P22083 530 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 INTS3Q68E01 1043 aaKnown RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 EIF1ADQ8N9N8 165 aaKnown RBP4.02□□□□□ -1.77
SYNE1-201ENST00000341594 TFR2Q9UP52 801 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 DOCK9Q9BZ29 2069 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 CACNA1SQ13698 1873 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 A6NJR5 290 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 TBC1D7Q9P0N9 293 aa4.02□□□□□ -1.77
SYNE1-201ENST00000341594 MAGI1Q96QZ7 1491 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 GIGYF1O75420 1035 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 ATP1A2P50993 1020 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 NBPF20Q3BBV1 942 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 PIP4K2BP78356 416 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 SF3B3Q15393 1217 aaKnown RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 SEC16AO15027 2179 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 ANKRD36A6QL64 1941 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 RTEL1-TNFRSF6BF6WH68 1400 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 TROQ12816 1431 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 TM6SF1Q9BZW5 370 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 INO80Q9ULG1 1556 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 NCKAP5LQ9HCH0 1330 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 SLC7A5Q01650 507 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 GPR161Q8N6U8 529 aaKnown RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 PDRG1Q9NUG6 133 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 HDAC9Q9UKV0 1011 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 SATB2Q9UPW6 733 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 ANKRD50Q9ULJ7 1429 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 CDC25BP30305 580 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 UBE2HP62256 183 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 ZKSCAN8Q15776 578 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 ZSCAN16Q9H4T2 348 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 GJB4Q9NTQ9 266 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 PER1O15534 1290 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 BTBD11A6QL63 1104 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 TSPYL6Q8N831 410 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 CARD6Q9BX69 1037 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 SDCCAG8Q86SQ7 713 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 ABTB1Q969K4 478 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 RELTQ969Z4 430 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 TBC1D31Q96DN5 1066 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 GPATCH3Q96I76 525 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 LCMT1Q9UIC8 334 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 F5H423 210 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 FOXO3O43524 673 aa4.01□□□□□ -1.77
SYNE1-201ENST00000341594 PPP1R12BO60237 982 aaPredicted RBP4.01□□□□□ -1.77
SYNE1-201ENST00000341594 ADCY1Q08828 1119 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms