RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 OPA1O60313 960 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 TNNI2P48788 182 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 TBC1D8BQ0IIM8 1120 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 ZSCAN26Q16670 478 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 KSR2Q6VAB6 950 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 KCNH5Q8NCM2 988 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 EHBP1Q8NDI1 1231 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 CTNND2Q9UQB3 1225 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 SOS1Q07889 1333 aaPredicted RBP9.81□□□□□ -0.84
RTN3-202ENST00000339997 SLC27A2O14975 620 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 ZNF202O95125 648 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 KLHL7Q8IXQ5 586 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 ANKRD24Q8TF21 1146 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 TAB2Q9NYJ8 693 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 KCNJ14Q9UNX9 436 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 NSFL1CQ9UNZ2 370 aaKnown RBP9.81□□□□□ -0.84
RTN3-202ENST00000339997 RPGRIP1LQ68CZ1 1315 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 EEF2P13639 858 aaKnown RBP9.81□□□□□ -0.84
RTN3-202ENST00000339997 KIF5BP33176 963 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 ME3Q16798 604 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 DCAF17Q5H9S7 520 aaPredicted RBP9.81□□□□□ -0.84
RTN3-202ENST00000339997 ZBTB21Q9ULJ3 1066 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 SEC31AO94979 1220 aaKnown RBP9.81□□□□□ -0.84
RTN3-202ENST00000339997 KRT9P35527 623 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 ATP1A2P50993 1020 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 NAPAP54920 295 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 MAGEB6Q8N7X4 407 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 KCNH3Q9ULD8 1083 aa9.81□□□□□ -0.84
RTN3-202ENST00000339997 TCOF1Q13428 1488 aaKnown RBP9.8□□□□□ -0.84
RTN3-202ENST00000339997 CDC42BPBQ9Y5S2 1711 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 TSPY3P0CV98 308 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 TSPY8P0CW00 308 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 DESP17661 470 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 PDE4BQ07343 736 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 TMCO4Q5TGY1 634 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 SND1Q7KZF4 910 aaKnown RBP eCLIP9.8□□□□□ -0.841e-9■■■■□ 22.5
RTN3-202ENST00000339997 AFAP1L1Q8TED9 768 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 SEC62Q99442 399 aaKnown RBP9.8□□□□□ -0.84
RTN3-202ENST00000339997 WDR70Q9NW82 654 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 IKBKGQ9Y6K9 419 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 MBD5Q9P267 1494 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 FRMD3A2A2Y4 597 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 GOLGA6CA6NDK9 693 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 SNRPA1P09661 255 aaKnown RBP9.8□□□□□ -0.84
RTN3-202ENST00000339997 GOLGA6DP0CG33 693 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 SP4Q02446 784 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 GIGYF2Q6Y7W6 1299 aaKnown RBP9.8□□□□□ -0.84
RTN3-202ENST00000339997 PAXIP1Q6ZW49 1069 aaPredicted RBP9.8□□□□□ -0.84
RTN3-202ENST00000339997 GSTA5Q7RTV2 222 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 ESR2Q92731 530 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 FAM89AQ96GI7 184 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 BLZF1Q9H2G9 400 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 GOLGA6AQ9NYA3 693 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 ZMYND10O75800 440 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 LIG3P49916 1009 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 KRT83P78385 493 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 SPAG1Q07617 926 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 CETN1Q12798 172 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 FAM114A1Q8IWE2 563 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 RPGRQ92834 1020 aaKnown RBP9.8□□□□□ -0.84
RTN3-202ENST00000339997 ZNF622Q969S3 477 aaKnown RBP eCLIP9.8□□□□□ -0.843e-7■■■■□ 19.7
RTN3-202ENST00000339997 CLSTN2Q9H4D0 955 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 TRIM35Q9UPQ4 493 aa9.8□□□□□ -0.84
RTN3-202ENST00000339997 INPP5BP32019 993 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 PNOCQ13519 176 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 LETM2Q2VYF4 491 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 ANKLE2Q86XL3 938 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 CCDC50Q8IVM0 306 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 ACSBG1Q96GR2 724 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 PKD2L1Q9P0L9 805 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 SGSM2O43147 1006 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 TBCAO75347 108 aaKnown RBP9.79□□□□□ -0.84
RTN3-202ENST00000339997 RPS6KB1P23443 525 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 NAA30Q147X3 362 aaPredicted RBP9.79□□□□□ -0.84
RTN3-202ENST00000339997 CCDC63Q8NA47 563 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 UHMK1Q8TAS1 419 aaKnown RBP9.79□□□□□ -0.84
RTN3-202ENST00000339997 EYA1Q99502 592 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 ZNF287Q9HBT7 754 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 TBC1D7Q9P0N9 293 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 SCAF11Q99590 1463 aaKnown RBP9.79□□□□□ -0.84
RTN3-202ENST00000339997 A0A1B0GUL7 405 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 BRD1O95696 1058 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 CALM1P0DP23 149 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 CALM2P0DP24 149 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 CALM3P0DP25 149 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 EIF6P56537 245 aaKnown RBP9.79□□□□□ -0.84
RTN3-202ENST00000339997 ANO1Q5XXA6 986 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 PPANQ9NQ55 473 aaKnown RBP9.79□□□□□ -0.84
RTN3-202ENST00000339997 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.79□□□□□ -0.84
RTN3-202ENST00000339997 PTH1RQ03431 593 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 UAP1Q16222 522 aaPredicted RBP9.79□□□□□ -0.84
RTN3-202ENST00000339997 ANKRD13CQ8N6S4 541 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 PPM1EQ8WY54 764 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 KIF14Q15058 1648 aa9.79□□□□□ -0.84
RTN3-202ENST00000339997 ERBB4Q15303 1308 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 TRAF5O00463 557 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 TTC6Q86TZ1 520 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 LINS1Q8NG48 757 aa9.78□□□□□ -0.84
RTN3-202ENST00000339997 FTOQ9C0B1 505 aaKnown RBP eCLIP9.78□□□□□ -0.84
RTN3-202ENST00000339997 RMND1Q9NWS8 449 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms