RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 GPR101Q96P66 508 aaPredicted RBP15.88■□□□□ 0.13
HMGB1-202ENST00000339872 CHD4Q14839 1912 aa15.88■□□□□ 0.13
HMGB1-202ENST00000339872 UFL1O94874 794 aa15.88■□□□□ 0.13
HMGB1-202ENST00000339872 ADGRA1Q86SQ6 560 aa15.88■□□□□ 0.13
HMGB1-202ENST00000339872 STK32BQ9NY57 414 aa15.88■□□□□ 0.13
HMGB1-202ENST00000339872 SMC3Q9UQE7 1217 aa15.88■□□□□ 0.13
HMGB1-202ENST00000339872 ZDHHC9Q9Y397 364 aa15.88■□□□□ 0.13
HMGB1-202ENST00000339872 PPEF1O14829 653 aaPredicted RBP15.87■□□□□ 0.13
HMGB1-202ENST00000339872 ZNF804AQ7Z570 1209 aa15.87■□□□□ 0.13
HMGB1-202ENST00000339872 BRF1Q92994 677 aa15.87■□□□□ 0.13
HMGB1-202ENST00000339872 EPB41L4AQ9HCS5 686 aaPredicted RBP15.87■□□□□ 0.13
HMGB1-202ENST00000339872 GGA1Q9UJY5 639 aa15.87■□□□□ 0.13
HMGB1-202ENST00000339872 JAG2Q9Y219 1238 aa15.87■□□□□ 0.13
HMGB1-202ENST00000339872 DDX11L8A8MPP1 907 aa15.86■□□□□ 0.13
HMGB1-202ENST00000339872 PATL2C9JE40 543 aaKnown RBP15.86■□□□□ 0.13
HMGB1-202ENST00000339872 ATP2B4P23634 1241 aa15.86■□□□□ 0.13
HMGB1-202ENST00000339872 EXOSC10Q01780 885 aaKnown RBP15.86■□□□□ 0.13
HMGB1-202ENST00000339872 STK3Q13188 491 aa15.86■□□□□ 0.13
HMGB1-202ENST00000339872 NAA16Q6N069 864 aaPredicted RBP15.86■□□□□ 0.13
HMGB1-202ENST00000339872 NAPBQ9H115 298 aa15.86■□□□□ 0.13
HMGB1-202ENST00000339872 LTBP1Q14766 1721 aa15.86■□□□□ 0.13
HMGB1-202ENST00000339872 ZMYM6O95789 1325 aa15.86■□□□□ 0.13
HMGB1-202ENST00000339872 SRGNP10124 158 aa15.86■□□□□ 0.13
HMGB1-202ENST00000339872 GNAT2P19087 354 aa15.86■□□□□ 0.13
HMGB1-202ENST00000339872 PDE6BP35913 854 aa15.86■□□□□ 0.13
HMGB1-202ENST00000339872 FOXD4L5Q5VV16 416 aaPredicted RBP15.86■□□□□ 0.13
HMGB1-202ENST00000339872 CHST3Q7LGC8 479 aa15.86■□□□□ 0.13
HMGB1-202ENST00000339872 IFNL3Q8IZI9 196 aa15.86■□□□□ 0.13
HMGB1-202ENST00000339872 FOXD4L4Q8WXT5 416 aaPredicted RBP15.86■□□□□ 0.13
HMGB1-202ENST00000339872 NBPF3Q9H094 633 aa15.86■□□□□ 0.13
HMGB1-202ENST00000339872 SLC4A4Q9Y6R1 1079 aa15.86■□□□□ 0.13
HMGB1-202ENST00000339872 MAGEB6P1A0A0J9YX57 407 aa15.85■□□□□ 0.13
HMGB1-202ENST00000339872 PRKAB2O43741 272 aa15.85■□□□□ 0.13
HMGB1-202ENST00000339872 SF3B2Q13435 895 aaKnown RBP15.85■□□□□ 0.13
HMGB1-202ENST00000339872 ALX1Q15699 326 aa15.85■□□□□ 0.13
HMGB1-202ENST00000339872 TMC4Q7Z404 712 aa15.85■□□□□ 0.13
HMGB1-202ENST00000339872 RALYLQ86SE5 291 aaKnown RBP15.85■□□□□ 0.13
HMGB1-202ENST00000339872 GSG1L2A8MUP6 293 aa15.85■□□□□ 0.13
HMGB1-202ENST00000339872 DTNBO60941 627 aa15.85■□□□□ 0.13
HMGB1-202ENST00000339872 NPR1P16066 1061 aa15.85■□□□□ 0.13
HMGB1-202ENST00000339872 PRDX5P30044 214 aa15.85■□□□□ 0.13
HMGB1-202ENST00000339872 C15orf52Q6ZUT6 534 aaKnown RBP15.85■□□□□ 0.13
HMGB1-202ENST00000339872 TBC1D10CQ8IV04 446 aa15.85■□□□□ 0.13
HMGB1-202ENST00000339872 NCOA7Q8NI08 942 aa15.85■□□□□ 0.13
HMGB1-202ENST00000339872 ZNF384Q8TF68 577 aa15.85■□□□□ 0.13
HMGB1-202ENST00000339872 BAG4O95429 457 aaKnown RBP15.84■□□□□ 0.13
HMGB1-202ENST00000339872 BRD1O95696 1058 aa15.84■□□□□ 0.13
HMGB1-202ENST00000339872 GJB2P29033 226 aa15.84■□□□□ 0.13
HMGB1-202ENST00000339872 MECOMQ03112 1051 aa15.84■□□□□ 0.13
HMGB1-202ENST00000339872 CLEC17AQ6ZS10 378 aa15.84■□□□□ 0.13
HMGB1-202ENST00000339872 NSUN4Q96CB9 384 aaKnown RBP15.84■□□□□ 0.13
HMGB1-202ENST00000339872 NACAP1Q9BZK3 213 aa15.84■□□□□ 0.13
HMGB1-202ENST00000339872 PODXL2Q9NZ53 605 aa15.84■□□□□ 0.13
HMGB1-202ENST00000339872 TIAM2Q8IVF5 1701 aa15.84■□□□□ 0.13
HMGB1-202ENST00000339872 ZBTB22O15209 634 aa15.84■□□□□ 0.13
HMGB1-202ENST00000339872 BAG6P46379 1132 aa15.84■□□□□ 0.13
HMGB1-202ENST00000339872 TDO2P48775 406 aa15.84■□□□□ 0.13
HMGB1-202ENST00000339872 SP8Q8IXZ3 490 aa15.84■□□□□ 0.13
HMGB1-202ENST00000339872 MB21D2Q8IYB1 491 aaPredicted RBP15.84■□□□□ 0.13
HMGB1-202ENST00000339872 TDRD7Q8NHU6 1098 aaKnown RBP15.84■□□□□ 0.13
HMGB1-202ENST00000339872 KIAA1551Q9HCM1 1747 aa15.84■□□□□ 0.13
HMGB1-202ENST00000339872 APOBRQ0VD83 1088 aa15.83■□□□□ 0.12
HMGB1-202ENST00000339872 TRDNQ13061 729 aa15.83■□□□□ 0.12
HMGB1-202ENST00000339872 TBC1D16Q8TBP0 767 aa15.83■□□□□ 0.12
HMGB1-202ENST00000339872 RIOK1Q9BRS2 568 aaKnown RBP15.83■□□□□ 0.12
HMGB1-202ENST00000339872 AGXT2Q9BYV1 514 aa15.83■□□□□ 0.12
HMGB1-202ENST00000339872 POLLQ9UGP5 575 aa15.83■□□□□ 0.12
HMGB1-202ENST00000339872 ATP6V0A2Q9Y487 856 aa15.83■□□□□ 0.12
HMGB1-202ENST00000339872 C6orf229H3BNL8 230 aa15.83■□□□□ 0.12
HMGB1-202ENST00000339872 PRC1O43663 620 aa15.83■□□□□ 0.12
HMGB1-202ENST00000339872 MCM5P33992 734 aa15.83■□□□□ 0.12
HMGB1-202ENST00000339872 DYNLL1P63167 89 aaKnown RBP15.83■□□□□ 0.12
HMGB1-202ENST00000339872 DEFB132Q7Z7B7 95 aa15.83■□□□□ 0.12
HMGB1-202ENST00000339872 WDR66Q8TBY9 1149 aa15.83■□□□□ 0.12
HMGB1-202ENST00000339872 SDR42E1Q8WUS8 393 aa15.83■□□□□ 0.12
HMGB1-202ENST00000339872 GTF3C6Q969F1 213 aa15.83■□□□□ 0.12
HMGB1-202ENST00000339872 ALDH1B1P30837 517 aa15.82■□□□□ 0.12
HMGB1-202ENST00000339872 SPTY2D1Q68D10 685 aaPredicted RBP15.82■□□□□ 0.12
HMGB1-202ENST00000339872 DZIP1Q86YF9 867 aaKnown RBP15.82■□□□□ 0.12
HMGB1-202ENST00000339872 MASTLQ96GX5 879 aa15.82■□□□□ 0.12
HMGB1-202ENST00000339872 WDR33Q9C0J8 1336 aaKnown RBP15.82■□□□□ 0.12
HMGB1-202ENST00000339872 SALL1Q9NSC2 1324 aa15.82■□□□□ 0.12
HMGB1-202ENST00000339872 BAZ2AQ9UIF9 1905 aaKnown RBP15.82■□□□□ 0.12
HMGB1-202ENST00000339872 GOLGA6L22H0YM25 854 aa15.82■□□□□ 0.12
HMGB1-202ENST00000339872 CD209Q9NNX6 404 aa15.82■□□□□ 0.12
HMGB1-202ENST00000339872 NAP1L2Q9ULW6 460 aaPredicted RBP15.82■□□□□ 0.12
HMGB1-202ENST00000339872 SYT1P21579 422 aa15.81■□□□□ 0.12
HMGB1-202ENST00000339872 ANTXR2P58335 489 aa15.81■□□□□ 0.12
HMGB1-202ENST00000339872 CTDSPL2Q05D32 466 aa15.81■□□□□ 0.12
HMGB1-202ENST00000339872 MCTP1Q6DN14 999 aa15.81■□□□□ 0.12
HMGB1-202ENST00000339872 NEDD4P46934 1319 aa15.81■□□□□ 0.12
HMGB1-202ENST00000339872 DUOX1Q9NRD9 1551 aa15.81■□□□□ 0.12
HMGB1-202ENST00000339872 STX6O43752 255 aa15.8■□□□□ 0.12
HMGB1-202ENST00000339872 LDHBP07195 334 aaKnown RBP15.8■□□□□ 0.12
HMGB1-202ENST00000339872 ZNF622Q969S3 477 aaKnown RBP eCLIP15.8■□□□□ 0.128e-11■■■■■ 55.4
HMGB1-202ENST00000339872 SCRN1Q12765 414 aa15.8■□□□□ 0.12
HMGB1-202ENST00000339872 OLFM4Q6UX06 510 aa15.8■□□□□ 0.12
HMGB1-202ENST00000339872 C2CD5Q86YS7 1000 aa15.8■□□□□ 0.12
HMGB1-202ENST00000339872 FBXL16Q8N461 479 aa15.8■□□□□ 0.12
HMGB1-202ENST00000339872 GPHNQ9NQX3 736 aaPredicted RBP15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms