RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 UTP14CQ5TAP6 766 aaKnown RBP13.04□□□□□ -0.32
VPS39-201ENST00000318006 OTUD7AQ8TE49 926 aaPredicted RBP13.04□□□□□ -0.32
VPS39-201ENST00000318006 TCP11L1Q9NUJ3 509 aa13.04□□□□□ -0.32
VPS39-201ENST00000318006 LMBRD1Q9NUN5 540 aa13.04□□□□□ -0.32
VPS39-201ENST00000318006 MKRN1Q9UHC7 482 aaKnown RBP13.04□□□□□ -0.32
VPS39-201ENST00000318006 IQSEC3Q9UPP2 1182 aaPredicted RBP13.04□□□□□ -0.32
VPS39-201ENST00000318006 UBA7P41226 1012 aa13.03□□□□□ -0.32
VPS39-201ENST00000318006 ZNF75DP51815 510 aa13.03□□□□□ -0.32
VPS39-201ENST00000318006 TTC14Q96N46 770 aa13.03□□□□□ -0.32
VPS39-201ENST00000318006 BAG1Q99933 345 aaPredicted RBP13.03□□□□□ -0.32
VPS39-201ENST00000318006 LGR6Q9HBX8 967 aa13.03□□□□□ -0.32
VPS39-201ENST00000318006 IRS4O14654 1257 aaPredicted RBP13.03□□□□□ -0.32
VPS39-201ENST00000318006 TOM1O60784 492 aa13.03□□□□□ -0.32
VPS39-201ENST00000318006 CFAP58Q5T655 872 aa13.03□□□□□ -0.32
VPS39-201ENST00000318006 ALG1Q9BT22 464 aa13.03□□□□□ -0.32
VPS39-201ENST00000318006 NDUFAB1O14561 156 aa13.03□□□□□ -0.32
VPS39-201ENST00000318006 BMP15O95972 392 aa13.03□□□□□ -0.32
VPS39-201ENST00000318006 CARD6Q9BX69 1037 aa13.03□□□□□ -0.32
VPS39-201ENST00000318006 GUCA1BQ9UMX6 200 aa13.03□□□□□ -0.32
VPS39-201ENST00000318006 MACROD2A1Z1Q3 448 aa13.02□□□□□ -0.32
VPS39-201ENST00000318006 GSTO1P78417 241 aa13.02□□□□□ -0.32
VPS39-201ENST00000318006 DDX12PQ92771 950 aa13.02□□□□□ -0.32
VPS39-201ENST00000318006 CAPZA3Q96KX2 299 aa13.02□□□□□ -0.32
VPS39-201ENST00000318006 OAS2P29728 719 aaKnown RBP13.02□□□□□ -0.32
VPS39-201ENST00000318006 WWC2Q6AWC2 1192 aa13.02□□□□□ -0.32
VPS39-201ENST00000318006 MAGI2Q86UL8 1455 aa13.02□□□□□ -0.32
VPS39-201ENST00000318006 KDM5AP29375 1690 aaKnown RBP13.02□□□□□ -0.33
VPS39-201ENST00000318006 PRC1O43663 620 aa13.02□□□□□ -0.33
VPS39-201ENST00000318006 ZSCAN26Q16670 478 aa13.02□□□□□ -0.33
VPS39-201ENST00000318006 METTL22Q9BUU2 404 aaPredicted RBP13.02□□□□□ -0.33
VPS39-201ENST00000318006 USP19O94966 1318 aa13.02□□□□□ -0.33
VPS39-201ENST00000318006 PLBD2Q8NHP8 589 aa13.02□□□□□ -0.33
VPS39-201ENST00000318006 CNKSR2Q8WXI2 1034 aa13.02□□□□□ -0.33
VPS39-201ENST00000318006 CALML4Q96GE6 196 aa13.02□□□□□ -0.33
VPS39-201ENST00000318006 ARHGEF10O15013 1369 aa13.02□□□□□ -0.33
VPS39-201ENST00000318006 A0A1W2PRG0 241 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 IDEP14735 1019 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 AFMP43652 599 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 CHMP4BP1P59074 171 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 RTN1Q16799 776 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 NAA16Q6N069 864 aaPredicted RBP13.01□□□□□ -0.33
VPS39-201ENST00000318006 ZBTB9Q96C00 473 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 CLNS1AP54105 237 aaKnown RBP13.01□□□□□ -0.33
VPS39-201ENST00000318006 MYL5Q02045 173 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 TNIP1Q15025 636 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 TSC1Q92574 1164 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 UBA5Q9GZZ9 404 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 SAMD15Q9P1V8 674 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 STX8Q9UNK0 236 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 KIAA0232Q92628 1395 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 WDHD1O75717 1129 aaPredicted RBP13.01□□□□□ -0.33
VPS39-201ENST00000318006 MAP2K2P36507 400 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 ST5P78524 1137 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 ZFYVE16Q7Z3T8 1539 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 MARCKSP29966 332 aaPredicted RBP13.01□□□□□ -0.33
VPS39-201ENST00000318006 ATL3Q6DD88 541 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 RUFY3Q7L099 469 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 CNGA4Q8IV77 575 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 RASAL2Q9UJF2 1139 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 UGGT1Q9NYU2 1555 aa13.01□□□□□ -0.33
VPS39-201ENST00000318006 LACTBP83111 547 aaPredicted RBP13□□□□□ -0.33
VPS39-201ENST00000318006 DHX32Q7L7V1 743 aaKnown RBP13□□□□□ -0.33
VPS39-201ENST00000318006 CCDC50Q8IVM0 306 aa13□□□□□ -0.33
VPS39-201ENST00000318006 CUL5Q93034 780 aa13□□□□□ -0.33
VPS39-201ENST00000318006 VAT1LQ9HCJ6 419 aa13□□□□□ -0.33
VPS39-201ENST00000318006 LTKP29376 864 aa13□□□□□ -0.33
VPS39-201ENST00000318006 ARHGAP25P42331 645 aa13□□□□□ -0.33
VPS39-201ENST00000318006 IFIT1BQ5T764 474 aaKnown RBP13□□□□□ -0.33
VPS39-201ENST00000318006 CCDC42Q96M95 316 aa13□□□□□ -0.33
VPS39-201ENST00000318006 SELENOSQ9BQE4 189 aa13□□□□□ -0.33
VPS39-201ENST00000318006 IMPACTQ9P2X3 320 aa13□□□□□ -0.33
VPS39-201ENST00000318006 ZNF219Q9P2Y4 722 aaPredicted RBP13□□□□□ -0.33
VPS39-201ENST00000318006 AOX1Q06278 1338 aa13□□□□□ -0.33
VPS39-201ENST00000318006 HLA-DOAP06340 250 aa13□□□□□ -0.33
VPS39-201ENST00000318006 HELBQ8NG08 1087 aaPredicted RBP13□□□□□ -0.33
VPS39-201ENST00000318006 CCDC77Q9BR77 488 aa13□□□□□ -0.33
VPS39-201ENST00000318006 NBPF7P0C2Y1 421 aaPredicted RBP13□□□□□ -0.33
VPS39-201ENST00000318006 CETN1Q12798 172 aa13□□□□□ -0.33
VPS39-201ENST00000318006 SLC4A8Q2Y0W8 1093 aa13□□□□□ -0.33
VPS39-201ENST00000318006 TCERG1LQ5VWI1 586 aa13□□□□□ -0.33
VPS39-201ENST00000318006 PSMA7O14818 248 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 GNAT2P19087 354 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 FAM160A1Q05DH4 1040 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 MYCBPQ99417 103 aaPredicted RBP12.99□□□□□ -0.33
VPS39-201ENST00000318006 SLC52A2Q9HAB3 445 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 CBX8Q9HC52 389 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 EXOC1Q9NV70 894 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 GOLGA6CA6NDK9 693 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 AKR1B15C9JRZ8 316 aaPredicted RBP12.99□□□□□ -0.33
VPS39-201ENST00000318006 EYA2O00167 538 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 GOLGA6DP0CG33 693 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 CLSTN2Q9H4D0 955 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 GOLGA6AQ9NYA3 693 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 PNMA6EA0A0J9YXQ4 647 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 SPAG5Q96R06 1193 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 PLVAPQ9BX97 442 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 NYXQ9GZU5 481 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 HOMER2Q9NSB8 354 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 TMEM63CQ9P1W3 806 aa12.99□□□□□ -0.33
VPS39-201ENST00000318006 DAAM2Q86T65 1068 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms