RNA–Protein interactions for RNA: ENST00000306024.3

LSM3-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM3, Length 3,815 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3-201ENST00000306024 USP42Q9H9J4 1324 aaKnown RBP12.65□□□□□ -0.38
LSM3-201ENST00000306024 KIF2AO00139 706 aaPredicted RBP12.65□□□□□ -0.38
LSM3-201ENST00000306024 MMP10P09238 476 aa12.65□□□□□ -0.38
LSM3-201ENST00000306024 SKIDA1Q1XH10 827 aa12.65□□□□□ -0.38
LSM3-201ENST00000306024 ARHGAP29Q52LW3 1261 aa12.65□□□□□ -0.38
LSM3-201ENST00000306024 CTR9Q6PD62 1173 aa12.65□□□□□ -0.38
LSM3-201ENST00000306024 FBXO38Q6PIJ6 1188 aa12.65□□□□□ -0.38
LSM3-201ENST00000306024 NRBP1Q9UHY1 535 aa12.65□□□□□ -0.38
LSM3-201ENST00000306024 PLSCR1O15162 318 aa12.64□□□□□ -0.39
LSM3-201ENST00000306024 CHMP4CQ96CF2 233 aa12.64□□□□□ -0.39
LSM3-201ENST00000306024 WWC3Q9ULE0 1092 aa12.64□□□□□ -0.39
LSM3-201ENST00000306024 ZSCAN25Q6NSZ9 544 aa12.64□□□□□ -0.39
LSM3-201ENST00000306024 SNW1Q13573 536 aaKnown RBP12.64□□□□□ -0.39
LSM3-201ENST00000306024 CCDC83Q8IWF9 413 aa12.64□□□□□ -0.39
LSM3-201ENST00000306024 XAGE2Q96GT9 111 aa12.64□□□□□ -0.39
LSM3-201ENST00000306024 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.64□□□□□ -0.39
LSM3-201ENST00000306024 NDUFB9Q9Y6M9 179 aa12.64□□□□□ -0.39
LSM3-201ENST00000306024 TLR7Q9NYK1 1049 aaKnown RBP12.63□□□□□ -0.39
LSM3-201ENST00000306024 LRP2BPQ9P2M1 347 aa12.63□□□□□ -0.39
LSM3-201ENST00000306024 DTNBO60941 627 aa12.63□□□□□ -0.39
LSM3-201ENST00000306024 NTSR2O95665 410 aa12.63□□□□□ -0.39
LSM3-201ENST00000306024 PUM3Q15397 648 aaKnown RBP12.63□□□□□ -0.39
LSM3-201ENST00000306024 FEZ2Q9UHY8 353 aaPredicted RBP12.63□□□□□ -0.39
LSM3-201ENST00000306024 DOT1LQ8TEK3 1739 aa12.63□□□□□ -0.39
LSM3-201ENST00000306024 F13A1P00488 732 aa12.63□□□□□ -0.39
LSM3-201ENST00000306024 FAM177A1Q8N128 213 aaPredicted RBP12.63□□□□□ -0.39
LSM3-201ENST00000306024 RBM17Q96I25 401 aaKnown RBP12.63□□□□□ -0.39
LSM3-201ENST00000306024 EFCC1Q9HA90 598 aa12.63□□□□□ -0.39
LSM3-201ENST00000306024 FBXO3Q9UK99 471 aa12.63□□□□□ -0.39
LSM3-201ENST00000306024 NEMFO60524 1076 aa12.62□□□□□ -0.39
LSM3-201ENST00000306024 ZKSCAN1P17029 563 aaPredicted RBP12.62□□□□□ -0.39
LSM3-201ENST00000306024 ERCC6LQ2NKX8 1250 aa12.62□□□□□ -0.39
LSM3-201ENST00000306024 DBNLQ9UJU6 430 aaKnown RBP12.62□□□□□ -0.39
LSM3-201ENST00000306024 CARMIL3Q8ND23 1372 aa12.62□□□□□ -0.39
LSM3-201ENST00000306024 CIAO1O76071 339 aa12.62□□□□□ -0.39
LSM3-201ENST00000306024 CASP7P55210 303 aa12.62□□□□□ -0.39
LSM3-201ENST00000306024 ZSCAN26Q16670 478 aa12.62□□□□□ -0.39
LSM3-201ENST00000306024 LARP1BQ659C4 914 aaKnown RBP12.62□□□□□ -0.39
LSM3-201ENST00000306024 TEX2Q8IWB9 1127 aa12.62□□□□□ -0.39
LSM3-201ENST00000306024 SECISBP2LQ93073 1101 aaKnown RBP12.62□□□□□ -0.39
LSM3-201ENST00000306024 PLA2G12BQ9BX93 195 aa12.62□□□□□ -0.39
LSM3-201ENST00000306024 RAI14Q9P0K7 980 aa12.62□□□□□ -0.39
LSM3-201ENST00000306024 MROH5Q6ZUA9 1318 aa12.62□□□□□ -0.39
LSM3-201ENST00000306024 URI1O94763 535 aaPredicted RBP12.62□□□□□ -0.39
LSM3-201ENST00000306024 DRC1Q96MC2 740 aa12.62□□□□□ -0.39
LSM3-201ENST00000306024 DNAJC25Q9H1X3 360 aa12.62□□□□□ -0.39
LSM3-201ENST00000306024 SMC2O95347 1197 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 UQCRFS1P1P0C7P4 283 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 SYT1P21579 422 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 ZNF75DP51815 510 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 SPATA32Q96LK8 384 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 PDE8BO95263 885 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 POLD1P28340 1107 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 ILDR1Q86SU0 546 aaPredicted RBP12.61□□□□□ -0.39
LSM3-201ENST00000306024 LPIN2Q92539 896 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 EDC3Q96F86 508 aaKnown RBP12.61□□□□□ -0.39
LSM3-201ENST00000306024 DACT1Q9NYF0 836 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 GLI3P10071 1580 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 GYS1P13807 737 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 CAPN2P17655 700 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 FAM193AP78312 1265 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 CHRNDQ07001 517 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 SYT10Q6XYQ8 523 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 COL23A1Q86Y22 540 aaPredicted RBP12.61□□□□□ -0.39
LSM3-201ENST00000306024 CCDC34Q96HJ3 373 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 ESYT1Q9BSJ8 1104 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 ANKRD2Q9GZV1 360 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 PAG1Q9NWQ8 432 aa12.61□□□□□ -0.39
LSM3-201ENST00000306024 CSF1RP07333 972 aa12.6□□□□□ -0.39
LSM3-201ENST00000306024 TTC31Q49AM3 519 aaPredicted RBP12.6□□□□□ -0.39
LSM3-201ENST00000306024 CBX8Q9HC52 389 aa12.6□□□□□ -0.39
LSM3-201ENST00000306024 TFIP11Q9UBB9 837 aaKnown RBP12.6□□□□□ -0.39
LSM3-201ENST00000306024 NRAPQ86VF7 1730 aa12.6□□□□□ -0.39
LSM3-201ENST00000306024 CCDC69A6NI79 296 aa12.6□□□□□ -0.39
LSM3-201ENST00000306024 H3BQV1 296 aa12.6□□□□□ -0.39
LSM3-201ENST00000306024 ADORA1P30542 326 aa12.6□□□□□ -0.39
LSM3-201ENST00000306024 SLC20A2Q08357 652 aa12.6□□□□□ -0.39
LSM3-201ENST00000306024 IFFO2Q5TF58 517 aa12.6□□□□□ -0.39
LSM3-201ENST00000306024 SNAP23O00161 211 aa12.6□□□□□ -0.39
LSM3-201ENST00000306024 RFX5P48382 616 aaPredicted RBP12.6□□□□□ -0.39
LSM3-201ENST00000306024 SLC15A2Q16348 729 aa12.6□□□□□ -0.39
LSM3-201ENST00000306024 HSP90B2PQ58FF3 399 aa12.6□□□□□ -0.39
LSM3-201ENST00000306024 STAP2Q9UGK3 403 aa12.6□□□□□ -0.39
LSM3-201ENST00000306024 AOX1Q06278 1338 aa12.6□□□□□ -0.39
LSM3-201ENST00000306024 H0YIN7 160 aa12.59□□□□□ -0.39
LSM3-201ENST00000306024 GJB2P29033 226 aa12.59□□□□□ -0.39
LSM3-201ENST00000306024 CEBPZQ03701 1054 aaKnown RBP12.59□□□□□ -0.39
LSM3-201ENST00000306024 CACTINQ8WUQ7 758 aaKnown RBP12.59□□□□□ -0.39
LSM3-201ENST00000306024 RGS17Q9UGC6 210 aaPredicted RBP12.59□□□□□ -0.39
LSM3-201ENST00000306024 LIMCH1Q9UPQ0 1083 aa12.59□□□□□ -0.39
LSM3-201ENST00000306024 CASTP20810 708 aaKnown RBP12.59□□□□□ -0.39
LSM3-201ENST00000306024 CASQ1P31415 396 aa12.59□□□□□ -0.39
LSM3-201ENST00000306024 RGS22Q8NE09 1264 aa12.59□□□□□ -0.39
LSM3-201ENST00000306024 CELF1Q92879 486 aaKnown RBP12.59□□□□□ -0.39
LSM3-201ENST00000306024 PALD1Q9ULE6 856 aa12.59□□□□□ -0.39
LSM3-201ENST00000306024 CHMLP26374 656 aa12.59□□□□□ -0.39
LSM3-201ENST00000306024 PDE6BP35913 854 aa12.59□□□□□ -0.39
LSM3-201ENST00000306024 MAP3K12Q12852 859 aa12.59□□□□□ -0.39
LSM3-201ENST00000306024 ZNF827Q17R98 1081 aa12.59□□□□□ -0.39
LSM3-201ENST00000306024 PRR5LQ6MZQ0 368 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms