RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ALKQ9UM73 1620 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 KIF5CO60282 957 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 HLTFQ14527 1009 aaKnown RBP eCLIP7.27□□□□□ -1.25
VPS35-201ENST00000299138 AP1ARQ63HQ0 302 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 NME9Q86XW9 330 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 MLKLQ8NB16 471 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 CTNNBL1Q8WYA6 563 aaPredicted RBP7.27□□□□□ -1.25
VPS35-201ENST00000299138 POLR3EQ9NVU0 708 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 OVOS2A0A0J9YW53 1432 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 OVOS2Q6IE36 1432 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 LMTK3Q96Q04 1460 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 SEMA3EO15041 775 aa7.26□□□□□ -1.25
VPS35-201ENST00000299138 TOP1P11387 765 aaKnown RBP7.26□□□□□ -1.25
VPS35-201ENST00000299138 ME1P48163 572 aa7.26□□□□□ -1.25
VPS35-201ENST00000299138 USPL1Q5W0Q7 1092 aa7.26□□□□□ -1.25
VPS35-201ENST00000299138 TTC6Q86TZ1 520 aa7.26□□□□□ -1.25
VPS35-201ENST00000299138 OTUD6BQ8N6M0 293 aa7.26□□□□□ -1.25
VPS35-201ENST00000299138 RTEL1Q9NZ71 1219 aa7.26□□□□□ -1.25
VPS35-201ENST00000299138 ATP5JP18859 108 aa7.26□□□□□ -1.25
VPS35-201ENST00000299138 NECTIN1Q15223 517 aa7.26□□□□□ -1.25
VPS35-201ENST00000299138 CCDC96Q2M329 555 aa7.26□□□□□ -1.25
VPS35-201ENST00000299138 ATRIPQ8WXE1 791 aa7.26□□□□□ -1.25
VPS35-201ENST00000299138 HDXQ7Z353 690 aa7.26□□□□□ -1.25
VPS35-201ENST00000299138 CTAGE6Q86UF2 777 aa7.26□□□□□ -1.25
VPS35-201ENST00000299138 DIP2AQ14689 1571 aa7.26□□□□□ -1.25
VPS35-201ENST00000299138 USP6P35125 1406 aa7.26□□□□□ -1.25
VPS35-201ENST00000299138 SH3BGRP55822 239 aaPredicted RBP7.26□□□□□ -1.25
VPS35-201ENST00000299138 WHAMMP3Q1A5X7 153 aa7.26□□□□□ -1.25
VPS35-201ENST00000299138 IQUBQ8NA54 791 aa7.26□□□□□ -1.25
VPS35-201ENST00000299138 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.26□□□□□ -1.25
VPS35-201ENST00000299138 ERCC5P28715 1186 aaPredicted RBP7.25□□□□□ -1.25
VPS35-201ENST00000299138 GCKP35557 465 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 PCK1P35558 622 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 CCDC121Q6ZUS5 278 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 POTEDQ86YR6 584 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 AKAP2Q9Y2D5 859 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 SLIT1O75093 1534 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 CCDC102BQ68D86 513 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 CNGA4Q8IV77 575 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 USP44Q9H0E7 712 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 CMA1P23946 247 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 CYP2C19P33261 490 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 SART3Q15020 963 aaKnown RBP7.25□□□□□ -1.25
VPS35-201ENST00000299138 AKAP4Q5JQC9 854 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 AACSQ86V21 672 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 BRF1Q92994 677 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 CCDC114Q96M63 670 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 VIPAS39Q9H9C1 493 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 ANAPC4Q9UJX5 808 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 RIMBP3CA6NJZ7 1639 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 RIMBP3BA6NNM3 1639 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 RIMBP3Q9UFD9 1639 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 NLRP12P59046 1061 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 WWC2Q6AWC2 1192 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 CWC27Q6UX04 472 aaKnown RBP7.25□□□□□ -1.25
VPS35-201ENST00000299138 NUTM2AQ8IVF1 878 aaPredicted RBP7.25□□□□□ -1.25
VPS35-201ENST00000299138 FSIP1Q8NA03 581 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 DACT3Q96B18 629 aaPredicted RBP7.25□□□□□ -1.25
VPS35-201ENST00000299138 ZSWIM4Q9H7M6 989 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 COPRSQ9NQ92 184 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 TBC1D2BQ9UPU7 963 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 AMOTL2Q9Y2J4 779 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 KIDINS220Q9ULH0 1771 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 TACC1O75410 805 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 CAPN2P17655 700 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 TMTC2Q8N394 836 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 COMMD10Q9Y6G5 202 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 NRKQ7Z2Y5 1582 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 SMARCA5O60264 1052 aaPredicted RBP7.25□□□□□ -1.25
VPS35-201ENST00000299138 EIF5P55010 431 aaKnown RBP7.25□□□□□ -1.25
VPS35-201ENST00000299138 NBPF11Q86T75 865 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 NUTM1Q86Y26 1132 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 SMARCC2Q8TAQ2 1214 aa7.25□□□□□ -1.25
VPS35-201ENST00000299138 PPP1R12BO60237 982 aaPredicted RBP7.24□□□□□ -1.25
VPS35-201ENST00000299138 MAP2K2P36507 400 aa7.24□□□□□ -1.25
VPS35-201ENST00000299138 PEX19P40855 299 aa7.24□□□□□ -1.25
VPS35-201ENST00000299138 MCMDC2Q4G0Z9 681 aa7.24□□□□□ -1.25
VPS35-201ENST00000299138 CCDC170Q8IYT3 715 aa7.24□□□□□ -1.25
VPS35-201ENST00000299138 PI4K2BQ8TCG2 481 aa7.24□□□□□ -1.25
VPS35-201ENST00000299138 ATG3Q9NT62 314 aa7.24□□□□□ -1.25
VPS35-201ENST00000299138 LUC7L2Q9Y383 392 aaKnown RBP7.24□□□□□ -1.25
VPS35-201ENST00000299138 PPP1R14CQ8TAE6 165 aa7.24□□□□□ -1.25
VPS35-201ENST00000299138 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP7.24□□□□□ -1.25
VPS35-201ENST00000299138 LTV1Q96GA3 475 aaPredicted RBP7.24□□□□□ -1.25
VPS35-201ENST00000299138 H2AFXP16104 143 aaPredicted RBP7.24□□□□□ -1.25
VPS35-201ENST00000299138 NLRP6P59044 892 aa7.24□□□□□ -1.25
VPS35-201ENST00000299138 TRIM22Q8IYM9 498 aa7.24□□□□□ -1.25
VPS35-201ENST00000299138 PDCD7Q8N8D1 485 aaKnown RBP7.24□□□□□ -1.25
VPS35-201ENST00000299138 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.24□□□□□ -1.251e-7■□□□□ 11
VPS35-201ENST00000299138 GADD45BO75293 160 aaPredicted RBP7.24□□□□□ -1.25
VPS35-201ENST00000299138 IMMTQ16891 758 aaKnown RBP7.24□□□□□ -1.25
VPS35-201ENST00000299138 ARFGAP2Q8N6H7 521 aa7.24□□□□□ -1.25
VPS35-201ENST00000299138 PPP1R1BQ9UD71 204 aaPredicted RBP7.24□□□□□ -1.25
VPS35-201ENST00000299138 SH3TC1Q8TE82 1336 aa7.24□□□□□ -1.25
VPS35-201ENST00000299138 CPS1P31327 1500 aa7.24□□□□□ -1.25
VPS35-201ENST00000299138 A0A1W2PRG0 241 aa7.24□□□□□ -1.25
VPS35-201ENST00000299138 CASQ2O14958 399 aaPredicted RBP7.24□□□□□ -1.25
VPS35-201ENST00000299138 BUB1BO60566 1050 aaPredicted RBP7.24□□□□□ -1.25
VPS35-201ENST00000299138 HSF2BPO75031 334 aa7.24□□□□□ -1.25
VPS35-201ENST00000299138 MAP3K7CLP57077 242 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms