RNA–Protein interactions for RNA: ENST00000298130.4

SPTSSA-201, Transcript of serine palmitoyltransferase small subunit A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTSSA, Length 2,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTSSA-201ENST00000298130 MICU3Q86XE3 530 aa28.36■■■□□ 2.13
SPTSSA-201ENST00000298130 PRDM4Q9UKN5 801 aa28.36■■■□□ 2.13
SPTSSA-201ENST00000298130 AKAP2Q9Y2D5 859 aa28.36■■■□□ 2.13
SPTSSA-201ENST00000298130 KIF1AQ12756 1690 aa28.36■■■□□ 2.13
SPTSSA-201ENST00000298130 NEDD4P46934 1319 aa28.36■■■□□ 2.13
SPTSSA-201ENST00000298130 WDR17Q8IZU2 1322 aa28.36■■■□□ 2.13
SPTSSA-201ENST00000298130 MROH7-TTC4A0A0A0MT08 1334 aa28.35■■■□□ 2.13
SPTSSA-201ENST00000298130 TMC6Q7Z403 805 aa28.35■■■□□ 2.13
SPTSSA-201ENST00000298130 LMOD1P29536 600 aaPredicted RBP28.35■■■□□ 2.13
SPTSSA-201ENST00000298130 PTPN14Q15678 1187 aa28.35■■■□□ 2.13
SPTSSA-201ENST00000298130 B4E1Z4 1266 aa28.34■■■□□ 2.13
SPTSSA-201ENST00000298130 SLC3A2P08195 630 aaKnown RBP28.34■■■□□ 2.13
SPTSSA-201ENST00000298130 PFKFB1P16118 471 aa28.34■■■□□ 2.13
SPTSSA-201ENST00000298130 ITGA6P23229 1130 aa28.34■■■□□ 2.13
SPTSSA-201ENST00000298130 EVCP57679 992 aa28.34■■■□□ 2.13
SPTSSA-201ENST00000298130 KIF23Q02241 960 aaPredicted RBP28.34■■■□□ 2.13
SPTSSA-201ENST00000298130 ATL3Q6DD88 541 aa28.34■■■□□ 2.13
SPTSSA-201ENST00000298130 TJP1Q07157 1748 aa28.34■■■□□ 2.13
SPTSSA-201ENST00000298130 IL2RBP14784 551 aa28.34■■■□□ 2.13
SPTSSA-201ENST00000298130 ANO1Q5XXA6 986 aa28.34■■■□□ 2.13
SPTSSA-201ENST00000298130 PIH1D3Q9NQM4 214 aaKnown RBP28.34■■■□□ 2.13
SPTSSA-201ENST00000298130 CNNM1Q9NRU3 951 aa28.34■■■□□ 2.13
SPTSSA-201ENST00000298130 SMAP1Q8IYB5 467 aaPredicted RBP28.33■■■□□ 2.13
SPTSSA-201ENST00000298130 NAT10Q9H0A0 1025 aaKnown RBP28.33■■■□□ 2.13
SPTSSA-201ENST00000298130 ATG3Q9NT62 314 aa28.33■■■□□ 2.13
SPTSSA-201ENST00000298130 CDC27P30260 824 aa28.33■■■□□ 2.13
SPTSSA-201ENST00000298130 CADPS2Q86UW7 1296 aa28.33■■■□□ 2.13
SPTSSA-201ENST00000298130 CLIC6Q96NY7 704 aa28.33■■■□□ 2.13
SPTSSA-201ENST00000298130 ZSCAN20P17040 1043 aaPredicted RBP28.33■■■□□ 2.13
SPTSSA-201ENST00000298130 KCNG4Q8TDN1 519 aa28.33■■■□□ 2.13
SPTSSA-201ENST00000298130 NWD2Q9ULI1 1742 aa28.32■■■□□ 2.12
SPTSSA-201ENST00000298130 ATP1A3P13637 1013 aa28.32■■■□□ 2.12
SPTSSA-201ENST00000298130 HSPA2P54652 639 aa28.32■■■□□ 2.12
SPTSSA-201ENST00000298130 ALG1Q9BT22 464 aa28.32■■■□□ 2.12
SPTSSA-201ENST00000298130 TMOD3Q9NYL9 352 aa28.32■■■□□ 2.12
SPTSSA-201ENST00000298130 ZNF215Q9UL58 517 aaPredicted RBP28.32■■■□□ 2.12
SPTSSA-201ENST00000298130 DHX16O60231 1041 aaKnown RBP28.32■■■□□ 2.12
SPTSSA-201ENST00000298130 AXDND1Q5T1B0 1012 aaPredicted RBP28.32■■■□□ 2.12
SPTSSA-201ENST00000298130 POLR3EQ9NVU0 708 aa28.32■■■□□ 2.12
SPTSSA-201ENST00000298130 A0A1W2PQ27 194 aa28.31■■■□□ 2.12
SPTSSA-201ENST00000298130 A0A1W2PQ64 194 aa28.31■■■□□ 2.12
SPTSSA-201ENST00000298130 A0A1W2PQD8 194 aa28.31■■■□□ 2.12
SPTSSA-201ENST00000298130 ZFYP08048 801 aaPredicted RBP28.31■■■□□ 2.12
SPTSSA-201ENST00000298130 RBM6P78332 1123 aaKnown RBP28.31■■■□□ 2.12
SPTSSA-201ENST00000298130 HSP90AA4PQ58FG1 418 aa28.31■■■□□ 2.12
SPTSSA-201ENST00000298130 SPECC1Q5M775 1068 aa28.31■■■□□ 2.12
SPTSSA-201ENST00000298130 KIF6Q6ZMV9 814 aa28.31■■■□□ 2.12
SPTSSA-201ENST00000298130 PPIL4Q8WUA2 492 aaKnown RBP eCLIP28.31■■■□□ 2.12
SPTSSA-201ENST00000298130 WWC3Q9ULE0 1092 aa28.31■■■□□ 2.12
SPTSSA-201ENST00000298130 KCPQ6ZWJ8 1503 aa28.31■■■□□ 2.12
SPTSSA-201ENST00000298130 ADAMTSL3P82987 1691 aa28.3■■■□□ 2.12
SPTSSA-201ENST00000298130 PHKA1P46020 1223 aa28.3■■■□□ 2.12
SPTSSA-201ENST00000298130 TRDNQ13061 729 aa28.3■■■□□ 2.12
SPTSSA-201ENST00000298130 CCAR2Q8N163 923 aaKnown RBP28.3■■■□□ 2.12
SPTSSA-201ENST00000298130 PAXBP1Q9Y5B6 917 aa28.3■■■□□ 2.12
SPTSSA-201ENST00000298130 MYH15Q9Y2K3 1946 aa28.3■■■□□ 2.12
SPTSSA-201ENST00000298130 KAT6BQ8WYB5 2073 aa28.3■■■□□ 2.12
SPTSSA-201ENST00000298130 METAP2P50579 478 aaKnown RBP eCLIP28.3■■■□□ 2.12
SPTSSA-201ENST00000298130 EVA1CP58658 441 aa28.3■■■□□ 2.12
SPTSSA-201ENST00000298130 GOLGA8FQ08AF8 430 aa28.3■■■□□ 2.12
SPTSSA-201ENST00000298130 GOLGA8DPQ0D2H9 430 aa28.3■■■□□ 2.12
SPTSSA-201ENST00000298130 GNL2Q13823 731 aaKnown RBP28.3■■■□□ 2.12
SPTSSA-201ENST00000298130 LRRFIP1Q32MZ4 808 aaKnown RBP28.3■■■□□ 2.12
SPTSSA-201ENST00000298130 CCDC82Q8N4S0 544 aa28.3■■■□□ 2.12
SPTSSA-201ENST00000298130 ARMCX5Q6P1M9 558 aa28.29■■■□□ 2.12
SPTSSA-201ENST00000298130 RIPOR2Q9Y4F9 1068 aa28.29■■■□□ 2.12
SPTSSA-201ENST00000298130 BRINP3Q76B58 766 aa28.29■■■□□ 2.12
SPTSSA-201ENST00000298130 VPS37DQ86XT2 251 aa28.29■■■□□ 2.12
SPTSSA-201ENST00000298130 ZBTB38Q8NAP3 1195 aaPredicted RBP28.29■■■□□ 2.12
SPTSSA-201ENST00000298130 ZNF532Q9HCE3 1301 aa28.29■■■□□ 2.12
SPTSSA-201ENST00000298130 PKD1L3Q7Z443 1732 aa28.29■■■□□ 2.12
SPTSSA-201ENST00000298130 YEATS4O95619 227 aa28.28■■■□□ 2.12
SPTSSA-201ENST00000298130 PCCAP05165 728 aaPredicted RBP28.28■■■□□ 2.12
SPTSSA-201ENST00000298130 TTLL11Q8NHH1 800 aa28.28■■■□□ 2.12
SPTSSA-201ENST00000298130 PIGBQ92521 554 aa28.28■■■□□ 2.12
SPTSSA-201ENST00000298130 PNOCQ13519 176 aa28.28■■■□□ 2.12
SPTSSA-201ENST00000298130 KRT40Q6A162 431 aa28.28■■■□□ 2.12
SPTSSA-201ENST00000298130 NFXL1Q6ZNB6 911 aa28.28■■■□□ 2.12
SPTSSA-201ENST00000298130 NYAP1Q6ZVC0 841 aa28.28■■■□□ 2.12
SPTSSA-201ENST00000298130 ADD2P35612 726 aa28.28■■■□□ 2.12
SPTSSA-201ENST00000298130 ANGEL1Q9UNK9 670 aaKnown RBP28.28■■■□□ 2.12
SPTSSA-201ENST00000298130 CSF1RP07333 972 aa28.27■■■□□ 2.12
SPTSSA-201ENST00000298130 LAMB4A4D0S4 1761 aa28.27■■■□□ 2.12
SPTSSA-201ENST00000298130 CTDSPL2Q05D32 466 aa28.27■■■□□ 2.12
SPTSSA-201ENST00000298130 NCAPHQ15003 741 aa28.27■■■□□ 2.12
SPTSSA-201ENST00000298130 NUP188Q5SRE5 1749 aa28.26■■■□□ 2.11
SPTSSA-201ENST00000298130 BRAPQ7Z569 592 aa28.26■■■□□ 2.11
SPTSSA-201ENST00000298130 CMTR1Q8N1G2 835 aaKnown RBP28.26■■■□□ 2.11
SPTSSA-201ENST00000298130 FBXL16Q8N461 479 aa28.26■■■□□ 2.11
SPTSSA-201ENST00000298130 E4F1Q66K89 784 aaPredicted RBP28.26■■■□□ 2.11
SPTSSA-201ENST00000298130 DPF2Q92785 391 aa28.26■■■□□ 2.11
SPTSSA-201ENST00000298130 ZKSCAN3Q9BRR0 538 aa28.26■■■□□ 2.11
SPTSSA-201ENST00000298130 RIC1Q4ADV7 1423 aa28.25■■■□□ 2.11
SPTSSA-201ENST00000298130 SYKP43405 635 aa28.25■■■□□ 2.11
SPTSSA-201ENST00000298130 SHC4Q6S5L8 630 aa28.25■■■□□ 2.11
SPTSSA-201ENST00000298130 DDX24Q9GZR7 859 aaKnown RBP eCLIP28.25■■■□□ 2.11
SPTSSA-201ENST00000298130 TBC1D2BQ9UPU7 963 aa28.25■■■□□ 2.11
SPTSSA-201ENST00000298130 CPDO75976 1380 aa28.25■■■□□ 2.11
SPTSSA-201ENST00000298130 NEMFO60524 1076 aa28.25■■■□□ 2.11
SPTSSA-201ENST00000298130 NLRP12P59046 1061 aa28.25■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms