RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 TCRBV5S4A2TA0A5A2 114 aa21.46■■□□□ 1.03
SHKBP1-201ENST00000291842 B4E1Z4 1266 aa21.46■■□□□ 1.03
SHKBP1-201ENST00000291842 MAGEB6Q8N7X4 407 aa21.46■■□□□ 1.03
SHKBP1-201ENST00000291842 LOC102724428A0A0B4J2F2 783 aa21.46■■□□□ 1.03
SHKBP1-201ENST00000291842 SIK1P57059 783 aa21.46■■□□□ 1.03
SHKBP1-201ENST00000291842 NUTM2BA6NNL0 878 aaPredicted RBP21.45■■□□□ 1.02
SHKBP1-201ENST00000291842 NUTM2EB1AL46 878 aaPredicted RBP21.45■■□□□ 1.02
SHKBP1-201ENST00000291842 DHX16O60231 1041 aaKnown RBP21.45■■□□□ 1.02
SHKBP1-201ENST00000291842 SLC5A1P13866 664 aa21.45■■□□□ 1.02
SHKBP1-201ENST00000291842 ZNF165P49910 485 aa21.45■■□□□ 1.02
SHKBP1-201ENST00000291842 SNW1Q13573 536 aaKnown RBP21.45■■□□□ 1.02
SHKBP1-201ENST00000291842 NUTM2AQ8IVF1 878 aaPredicted RBP21.45■■□□□ 1.02
SHKBP1-201ENST00000291842 CCDC144CPQ8IYA2 1237 aa21.45■■□□□ 1.02
SHKBP1-201ENST00000291842 ERCC4Q92889 916 aaPredicted RBP21.45■■□□□ 1.02
SHKBP1-201ENST00000291842 STRBPQ96SI9 672 aaKnown RBP21.45■■□□□ 1.02
SHKBP1-201ENST00000291842 SPATA31A1Q5TZJ5 1347 aa21.45■■□□□ 1.02
SHKBP1-201ENST00000291842 FSIP1Q8NA03 581 aa21.45■■□□□ 1.02
SHKBP1-201ENST00000291842 CHMP4CQ96CF2 233 aa21.45■■□□□ 1.02
SHKBP1-201ENST00000291842 AIFM3Q96NN9 605 aa21.45■■□□□ 1.02
SHKBP1-201ENST00000291842 NIP7Q9Y221 180 aaKnown RBP eCLIP21.45■■□□□ 1.02
SHKBP1-201ENST00000291842 CLIC4Q9Y696 253 aa21.45■■□□□ 1.02
SHKBP1-201ENST00000291842 CAMTA2O94983 1202 aa21.44■■□□□ 1.02
SHKBP1-201ENST00000291842 BCAMP50895 628 aa21.44■■□□□ 1.02
SHKBP1-201ENST00000291842 CCDC73Q6ZRK6 1079 aa21.44■■□□□ 1.02
SHKBP1-201ENST00000291842 NEDD4P46934 1319 aa21.44■■□□□ 1.02
SHKBP1-201ENST00000291842 TPM2P07951 284 aa21.44■■□□□ 1.02
SHKBP1-201ENST00000291842 FBXO18Q8NFZ0 1043 aa21.44■■□□□ 1.02
SHKBP1-201ENST00000291842 ARMT1Q9H993 441 aa21.44■■□□□ 1.02
SHKBP1-201ENST00000291842 PCDHA7Q9UN72 937 aa21.44■■□□□ 1.02
SHKBP1-201ENST00000291842 ANGEL1Q9UNK9 670 aaKnown RBP21.44■■□□□ 1.02
SHKBP1-201ENST00000291842 PLCH1Q4KWH8 1693 aa21.43■■□□□ 1.02
SHKBP1-201ENST00000291842 ATRNO75882 1429 aa21.43■■□□□ 1.02
SHKBP1-201ENST00000291842 MBD4O95243 580 aa21.43■■□□□ 1.02
SHKBP1-201ENST00000291842 CTDSPL2Q05D32 466 aa21.43■■□□□ 1.02
SHKBP1-201ENST00000291842 DNTTIP2Q5QJE6 756 aaKnown RBP21.43■■□□□ 1.02
SHKBP1-201ENST00000291842 KCNF1Q9H3M0 494 aa21.43■■□□□ 1.02
SHKBP1-201ENST00000291842 KIF28PB7ZC32 967 aa21.43■■□□□ 1.02
SHKBP1-201ENST00000291842 STK11IPQ8N1F8 1099 aa21.43■■□□□ 1.02
SHKBP1-201ENST00000291842 PIBF1Q8WXW3 757 aa21.43■■□□□ 1.02
SHKBP1-201ENST00000291842 MYL10Q9BUA6 226 aa21.43■■□□□ 1.02
SHKBP1-201ENST00000291842 IQSEC3Q9UPP2 1182 aaPredicted RBP21.43■■□□□ 1.02
SHKBP1-201ENST00000291842 KCNQ2O43526 872 aa21.42■■□□□ 1.02
SHKBP1-201ENST00000291842 NOLC1Q14978 699 aaKnown RBP eCLIP21.42■■□□□ 1.02
SHKBP1-201ENST00000291842 ATL3Q6DD88 541 aa21.42■■□□□ 1.02
SHKBP1-201ENST00000291842 C11orf57Q6ZUT1 292 aaPredicted RBP21.42■■□□□ 1.02
SHKBP1-201ENST00000291842 MICU3Q86XE3 530 aa21.42■■□□□ 1.02
SHKBP1-201ENST00000291842 FBXW7Q969H0 707 aa21.42■■□□□ 1.02
SHKBP1-201ENST00000291842 EPB41L4AQ9HCS5 686 aaPredicted RBP21.42■■□□□ 1.02
SHKBP1-201ENST00000291842 A0A1B0GVL5 298 aa21.41■■□□□ 1.02
SHKBP1-201ENST00000291842 METAP2P50579 478 aaKnown RBP eCLIP21.41■■□□□ 1.02
SHKBP1-201ENST00000291842 MAP3K12Q12852 859 aa21.41■■□□□ 1.02
SHKBP1-201ENST00000291842 ENGASEQ8NFI3 743 aa21.41■■□□□ 1.02
SHKBP1-201ENST00000291842 SH2B2O14492 632 aaPredicted RBP21.41■■□□□ 1.02
SHKBP1-201ENST00000291842 PRKAB2O43741 272 aa21.41■■□□□ 1.02
SHKBP1-201ENST00000291842 KINO60870 393 aaKnown RBP21.41■■□□□ 1.02
SHKBP1-201ENST00000291842 KCNQ4P56696 695 aa21.41■■□□□ 1.02
SHKBP1-201ENST00000291842 PHKBQ93100 1093 aa21.41■■□□□ 1.02
SHKBP1-201ENST00000291842 TRIM5Q9C035 493 aa21.41■■□□□ 1.02
SHKBP1-201ENST00000291842 RTEL1Q9NZ71 1219 aa21.41■■□□□ 1.02
SHKBP1-201ENST00000291842 CDC27P30260 824 aa21.4■■□□□ 1.02
SHKBP1-201ENST00000291842 FAM160A1Q05DH4 1040 aa21.4■■□□□ 1.02
SHKBP1-201ENST00000291842 STK38Q15208 465 aa21.4■■□□□ 1.02
SHKBP1-201ENST00000291842 SF3A1Q15459 793 aaKnown RBP21.4■■□□□ 1.02
SHKBP1-201ENST00000291842 CCDC152Q4G0S7 254 aa21.4■■□□□ 1.02
SHKBP1-201ENST00000291842 NFXL1Q6ZNB6 911 aa21.4■■□□□ 1.02
SHKBP1-201ENST00000291842 IFNL3Q8IZI9 196 aa21.4■■□□□ 1.02
SHKBP1-201ENST00000291842 AK7Q96M32 723 aa21.4■■□□□ 1.02
SHKBP1-201ENST00000291842 NAPBQ9H115 298 aa21.4■■□□□ 1.02
SHKBP1-201ENST00000291842 WDR19Q8NEZ3 1342 aa21.4■■□□□ 1.02
SHKBP1-201ENST00000291842 IGHMBP2P38935 993 aaKnown RBP21.4■■□□□ 1.02
SHKBP1-201ENST00000291842 DRC7Q8IY82 874 aa21.4■■□□□ 1.02
SHKBP1-201ENST00000291842 LINC00301Q8NCQ3 95 aa21.4■■□□□ 1.02
SHKBP1-201ENST00000291842 PYCARDQ9ULZ3 195 aa21.4■■□□□ 1.02
SHKBP1-201ENST00000291842 TACC3Q9Y6A5 838 aa21.4■■□□□ 1.02
SHKBP1-201ENST00000291842 WTIPA6NIX2 430 aaPredicted RBP21.39■■□□□ 1.02
SHKBP1-201ENST00000291842 PATL2C9JE40 543 aaKnown RBP21.39■■□□□ 1.02
SHKBP1-201ENST00000291842 NTSR2O95665 410 aa21.39■■□□□ 1.02
SHKBP1-201ENST00000291842 PTGS1P23219 599 aa21.39■■□□□ 1.02
SHKBP1-201ENST00000291842 APOA5Q6Q788 366 aa21.39■■□□□ 1.02
SHKBP1-201ENST00000291842 ZMYM6O95789 1325 aa21.39■■□□□ 1.02
SHKBP1-201ENST00000291842 MYH14Q7Z406 1995 aaKnown RBP21.39■■□□□ 1.01
SHKBP1-201ENST00000291842 WNK3Q9BYP7 1800 aa21.39■■□□□ 1.01
SHKBP1-201ENST00000291842 MYSM1Q5VVJ2 828 aa21.39■■□□□ 1.01
SHKBP1-201ENST00000291842 SMIM5Q71RC9 77 aa21.39■■□□□ 1.01
SHKBP1-201ENST00000291842 MIGA1Q8NAN2 632 aa21.39■■□□□ 1.01
SHKBP1-201ENST00000291842 TDRD7Q8NHU6 1098 aaKnown RBP21.39■■□□□ 1.01
SHKBP1-201ENST00000291842 CDCA7Q9BWT1 371 aaPredicted RBP21.39■■□□□ 1.01
SHKBP1-201ENST00000291842 NRBP1Q9UHY1 535 aa21.39■■□□□ 1.01
SHKBP1-201ENST00000291842 LRP5O75197 1615 aa21.39■■□□□ 1.01
SHKBP1-201ENST00000291842 UBE2Q2LH0YL09 131 aa21.38■■□□□ 1.01
SHKBP1-201ENST00000291842 NDUFA8P51970 172 aa21.38■■□□□ 1.01
SHKBP1-201ENST00000291842 CHRNDQ07001 517 aa21.38■■□□□ 1.01
SHKBP1-201ENST00000291842 IGDCC4Q8TDY8 1250 aa21.38■■□□□ 1.01
SHKBP1-201ENST00000291842 MRPS27Q92552 414 aaKnown RBP21.38■■□□□ 1.01
SHKBP1-201ENST00000291842 ZSWIM5Q9P217 1185 aa21.38■■□□□ 1.01
SHKBP1-201ENST00000291842 UQCRHLA0A096LP55 91 aa21.38■■□□□ 1.01
SHKBP1-201ENST00000291842 UQCRHP07919 91 aa21.38■■□□□ 1.01
SHKBP1-201ENST00000291842 KIF23Q02241 960 aaPredicted RBP21.38■■□□□ 1.01
SHKBP1-201ENST00000291842 PARP10Q53GL7 1025 aa21.38■■□□□ 1.01
SHKBP1-201ENST00000291842 TMEM67Q5HYA8 995 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms