RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 IRX3P78415 501 aaPredicted RBP18.89■□□□□ 0.61
CTCF-201ENST00000264010 KCNG4Q8TDN1 519 aa18.89■□□□□ 0.61
CTCF-201ENST00000264010 ZNF830Q96NB3 372 aaPredicted RBP18.89■□□□□ 0.61
CTCF-201ENST00000264010 NOL10Q9BSC4 688 aaKnown RBP18.89■□□□□ 0.61
CTCF-201ENST00000264010 CCDC196A0A1B0GTZ2 297 aa18.89■□□□□ 0.61
CTCF-201ENST00000264010 GNAT2P19087 354 aa18.89■□□□□ 0.61
CTCF-201ENST00000264010 ABCC6O95255 1503 aa18.89■□□□□ 0.61
CTCF-201ENST00000264010 CAMTA1Q9Y6Y1 1673 aa18.89■□□□□ 0.61
CTCF-201ENST00000264010 MBD4O95243 580 aa18.89■□□□□ 0.61
CTCF-201ENST00000264010 CSF1RP07333 972 aa18.89■□□□□ 0.61
CTCF-201ENST00000264010 STX1AQ16623 288 aa18.89■□□□□ 0.61
CTCF-201ENST00000264010 ALG1Q9BT22 464 aa18.89■□□□□ 0.61
CTCF-201ENST00000264010 ANGEL1Q9UNK9 670 aaKnown RBP18.89■□□□□ 0.61
CTCF-201ENST00000264010 SLC4A4Q9Y6R1 1079 aa18.89■□□□□ 0.61
CTCF-201ENST00000264010 SSRP1Q08945 709 aaKnown RBP18.88■□□□□ 0.61
CTCF-201ENST00000264010 UBE3CQ15386 1083 aa18.88■□□□□ 0.61
CTCF-201ENST00000264010 PI16Q6UXB8 463 aa18.88■□□□□ 0.61
CTCF-201ENST00000264010 AMOTL1Q8IY63 956 aa18.88■□□□□ 0.61
CTCF-201ENST00000264010 SPATA5Q8NB90 893 aa18.88■□□□□ 0.61
CTCF-201ENST00000264010 AK7Q96M32 723 aa18.88■□□□□ 0.61
CTCF-201ENST00000264010 ZPR1O75312 459 aa18.88■□□□□ 0.61
CTCF-201ENST00000264010 SLC3A2P08195 630 aaKnown RBP18.88■□□□□ 0.61
CTCF-201ENST00000264010 PDE6AP16499 860 aa18.88■□□□□ 0.61
CTCF-201ENST00000264010 PHKA1P46020 1223 aa18.88■□□□□ 0.61
CTCF-201ENST00000264010 MRPS27Q92552 414 aaKnown RBP18.88■□□□□ 0.61
CTCF-201ENST00000264010 LOC102724428A0A0B4J2F2 783 aa18.88■□□□□ 0.61
CTCF-201ENST00000264010 SIK1P57059 783 aa18.88■□□□□ 0.61
CTCF-201ENST00000264010 BRAPQ7Z569 592 aa18.88■□□□□ 0.61
CTCF-201ENST00000264010 CCDC144CPQ8IYA2 1237 aa18.88■□□□□ 0.61
CTCF-201ENST00000264010 CYP7A1P22680 504 aa18.87■□□□□ 0.61
CTCF-201ENST00000264010 GOLGA6L1Q8N7Z2 621 aa18.87■□□□□ 0.61
CTCF-201ENST00000264010 TRPM3Q9HCF6 1732 aaPredicted RBP18.87■□□□□ 0.61
CTCF-201ENST00000264010 OFD1O75665 1012 aa18.87■□□□□ 0.61
CTCF-201ENST00000264010 TMEM87BQ96K49 555 aa18.87■□□□□ 0.61
CTCF-201ENST00000264010 CRKLP46109 303 aaKnown RBP18.87■□□□□ 0.61
CTCF-201ENST00000264010 STOX1Q6ZVD7 989 aa18.87■□□□□ 0.61
CTCF-201ENST00000264010 PUS7LQ9H0K6 701 aaKnown RBP18.87■□□□□ 0.61
CTCF-201ENST00000264010 ABCC12Q96J65 1359 aa18.87■□□□□ 0.61
CTCF-201ENST00000264010 ADD2P35612 726 aa18.86■□□□□ 0.61
CTCF-201ENST00000264010 IPO4Q8TEX9 1081 aaKnown RBP18.86■□□□□ 0.61
CTCF-201ENST00000264010 B4E1Z4 1266 aa18.86■□□□□ 0.61
CTCF-201ENST00000264010 RESTQ13127 1097 aa18.86■□□□□ 0.61
CTCF-201ENST00000264010 BRMS1Q9HCU9 246 aa18.86■□□□□ 0.61
CTCF-201ENST00000264010 IQSEC3Q9UPP2 1182 aaPredicted RBP18.86■□□□□ 0.61
CTCF-201ENST00000264010 TOM1O60784 492 aa18.86■□□□□ 0.61
CTCF-201ENST00000264010 RIPOR2Q9Y4F9 1068 aa18.86■□□□□ 0.61
CTCF-201ENST00000264010 ATP2B1P20020 1258 aa18.85■□□□□ 0.61
CTCF-201ENST00000264010 PDLIM2Q96JY6 352 aa18.85■□□□□ 0.61
CTCF-201ENST00000264010 MCAMP43121 646 aa18.85■□□□□ 0.61
CTCF-201ENST00000264010 TEX35Q5T0J7 233 aa18.85■□□□□ 0.61
CTCF-201ENST00000264010 DHX37Q8IY37 1157 aaKnown RBP18.85■□□□□ 0.61
CTCF-201ENST00000264010 ZBTB9Q96C00 473 aa18.85■□□□□ 0.61
CTCF-201ENST00000264010 DNAJC25Q9H1X3 360 aa18.85■□□□□ 0.61
CTCF-201ENST00000264010 WTAPQ15007 396 aa18.85■□□□□ 0.61
CTCF-201ENST00000264010 OLFM4Q6UX06 510 aa18.85■□□□□ 0.61
CTCF-201ENST00000264010 SLC26A6Q9BXS9 759 aa18.85■□□□□ 0.61
CTCF-201ENST00000264010 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.85■□□□□ 0.611e-5■□□□□ 10.5
CTCF-201ENST00000264010 SPTLC2O15270 562 aa18.84■□□□□ 0.61
CTCF-201ENST00000264010 TMTC2Q8N394 836 aa18.84■□□□□ 0.61
CTCF-201ENST00000264010 MEX3CQ5U5Q3 659 aaKnown RBP18.84■□□□□ 0.61
CTCF-201ENST00000264010 SMAP1Q8IYB5 467 aaPredicted RBP18.84■□□□□ 0.61
CTCF-201ENST00000264010 THRAP3Q9Y2W1 955 aaKnown RBP18.84■□□□□ 0.61
CTCF-201ENST00000264010 DYNC1I1O14576 645 aa18.84■□□□□ 0.61
CTCF-201ENST00000264010 SCARF1Q14162 830 aa18.84■□□□□ 0.61
CTCF-201ENST00000264010 ARMT1Q9H993 441 aa18.84■□□□□ 0.61
CTCF-201ENST00000264010 MRC1P22897 1456 aa18.84■□□□□ 0.61
CTCF-201ENST00000264010 FAM160A1Q05DH4 1040 aa18.83■□□□□ 0.61
CTCF-201ENST00000264010 OTUD7BQ6GQQ9 843 aa18.83■□□□□ 0.61
CTCF-201ENST00000264010 LUZP1Q86V48 1076 aa18.83■□□□□ 0.61
CTCF-201ENST00000264010 TRIM34Q9BYJ4 488 aa18.83■□□□□ 0.61
CTCF-201ENST00000264010 EXOSC10Q01780 885 aaKnown RBP18.83■□□□□ 0.61
CTCF-201ENST00000264010 TTC12Q9H892 705 aaPredicted RBP18.83■□□□□ 0.61
CTCF-201ENST00000264010 IBSPP21815 317 aaPredicted RBP18.83■□□□□ 0.6
CTCF-201ENST00000264010 SMARCC2Q8TAQ2 1214 aa18.83■□□□□ 0.6
CTCF-201ENST00000264010 RGPD5Q99666 1765 aa18.83■□□□□ 0.6
CTCF-201ENST00000264010 SUSD4Q5VX71 490 aa18.82■□□□□ 0.6
CTCF-201ENST00000264010 MIGA1Q8NAN2 632 aa18.82■□□□□ 0.6
CTCF-201ENST00000264010 USP28Q96RU2 1077 aa18.82■□□□□ 0.6
CTCF-201ENST00000264010 ALS2Q96Q42 1657 aa18.82■□□□□ 0.6
CTCF-201ENST00000264010 NR1I2O75469 434 aa18.82■□□□□ 0.6
CTCF-201ENST00000264010 CCDC82Q8N4S0 544 aa18.82■□□□□ 0.6
CTCF-201ENST00000264010 NLRP3Q96P20 1036 aa18.82■□□□□ 0.6
CTCF-201ENST00000264010 NBPF5PQ86XG9 351 aaPredicted RBP18.82■□□□□ 0.6
CTCF-201ENST00000264010 SETDB2Q96T68 719 aa18.82■□□□□ 0.6
CTCF-201ENST00000264010 PIH1D3Q9NQM4 214 aaKnown RBP18.82■□□□□ 0.6
CTCF-201ENST00000264010 RXRAP19793 462 aa18.81■□□□□ 0.6
CTCF-201ENST00000264010 ST3GAL1Q11201 340 aa18.81■□□□□ 0.6
CTCF-201ENST00000264010 RTN1Q16799 776 aa18.81■□□□□ 0.6
CTCF-201ENST00000264010 IQCA1Q86XH1 822 aa18.81■□□□□ 0.6
CTCF-201ENST00000264010 TMX1Q9H3N1 280 aa18.81■□□□□ 0.6
CTCF-201ENST00000264010 MAGEB6P1A0A0J9YX57 407 aa18.81■□□□□ 0.6
CTCF-201ENST00000264010 SMC2O95347 1197 aa18.81■□□□□ 0.6
CTCF-201ENST00000264010 GTF2F1P35269 517 aaKnown RBP eCLIP18.81■□□□□ 0.6
CTCF-201ENST00000264010 CLIP2Q9UDT6 1046 aa18.81■□□□□ 0.6
CTCF-201ENST00000264010 RANBP6O60518 1105 aaKnown RBP18.81■□□□□ 0.6
CTCF-201ENST00000264010 ESR2Q92731 530 aa18.81■□□□□ 0.6
CTCF-201ENST00000264010 NYXQ9GZU5 481 aa18.81■□□□□ 0.6
CTCF-201ENST00000264010 ZNF500O60304 480 aaPredicted RBP18.81■□□□□ 0.6
CTCF-201ENST00000264010 CBX8Q9HC52 389 aa18.81■□□□□ 0.6
CTCF-201ENST00000264010 RCOR1Q9UKL0 485 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms