RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 PPP1R9BQ96SB3 815 aa15.22■□□□□ 0.03
SPTLC1-201ENST00000262554 STRBPQ96SI9 672 aaKnown RBP15.22■□□□□ 0.03
SPTLC1-201ENST00000262554 ZPR1O75312 459 aa15.21■□□□□ 0.03
SPTLC1-201ENST00000262554 CTDNEP1O95476 244 aa15.21■□□□□ 0.03
SPTLC1-201ENST00000262554 SLC10A5Q5PT55 438 aa15.21■□□□□ 0.03
SPTLC1-201ENST00000262554 TBC1D9BQ66K14 1250 aa15.21■□□□□ 0.03
SPTLC1-201ENST00000262554 KLHL34Q8N239 644 aa15.21■□□□□ 0.03
SPTLC1-201ENST00000262554 NCOA5Q9HCD5 579 aaKnown RBP15.21■□□□□ 0.03
SPTLC1-201ENST00000262554 BSDC1Q9NW68 430 aaPredicted RBP15.21■□□□□ 0.03
SPTLC1-201ENST00000262554 COL24A1Q17RW2 1714 aa15.21■□□□□ 0.03
SPTLC1-201ENST00000262554 ZMYM6O95789 1325 aa15.21■□□□□ 0.02
SPTLC1-201ENST00000262554 CHD4Q14839 1912 aa15.21■□□□□ 0.02
SPTLC1-201ENST00000262554 DHX16O60231 1041 aaKnown RBP15.2■□□□□ 0.02
SPTLC1-201ENST00000262554 RESTQ13127 1097 aa15.2■□□□□ 0.02
SPTLC1-201ENST00000262554 ALX1Q15699 326 aa15.2■□□□□ 0.02
SPTLC1-201ENST00000262554 TTC6Q86TZ1 520 aa15.2■□□□□ 0.02
SPTLC1-201ENST00000262554 GNL3LQ9NVN8 582 aaKnown RBP15.2■□□□□ 0.02
SPTLC1-201ENST00000262554 CCNL1Q9UK58 526 aaPredicted RBP15.2■□□□□ 0.02
SPTLC1-201ENST00000262554 TAF1P21675 1872 aa15.2■□□□□ 0.02
SPTLC1-201ENST00000262554 COL4A1P02462 1669 aa15.2■□□□□ 0.02
SPTLC1-201ENST00000262554 TAF1LQ8IZX4 1826 aa15.2■□□□□ 0.02
SPTLC1-201ENST00000262554 SALL1Q9NSC2 1324 aa15.2■□□□□ 0.02
SPTLC1-201ENST00000262554 LY75O60449 1722 aa15.2■□□□□ 0.02
SPTLC1-201ENST00000262554 PATL2C9JE40 543 aaKnown RBP15.2■□□□□ 0.02
SPTLC1-201ENST00000262554 GNPATO15228 680 aa15.2■□□□□ 0.02
SPTLC1-201ENST00000262554 UBE4AQ14139 1066 aa15.2■□□□□ 0.02
SPTLC1-201ENST00000262554 FAM173BQ6P4H8 233 aa15.2■□□□□ 0.02
SPTLC1-201ENST00000262554 SPATA32Q96LK8 384 aa15.2■□□□□ 0.02
SPTLC1-201ENST00000262554 SETDB2Q96T68 719 aa15.2■□□□□ 0.02
SPTLC1-201ENST00000262554 BCL2L12Q9HB09 334 aa15.2■□□□□ 0.02
SPTLC1-201ENST00000262554 KLF18A0A0U1RQI7 1052 aa15.19■□□□□ 0.02
SPTLC1-201ENST00000262554 MBD4O95243 580 aa15.19■□□□□ 0.02
SPTLC1-201ENST00000262554 ANTXR2P58335 489 aa15.19■□□□□ 0.02
SPTLC1-201ENST00000262554 MEX3CQ5U5Q3 659 aaKnown RBP15.19■□□□□ 0.02
SPTLC1-201ENST00000262554 C3orf67Q6ZVT6 689 aa15.19■□□□□ 0.02
SPTLC1-201ENST00000262554 NBPF3Q9H094 633 aa15.19■□□□□ 0.02
SPTLC1-201ENST00000262554 RTCBQ9Y3I0 505 aaKnown RBP15.19■□□□□ 0.02
SPTLC1-201ENST00000262554 SBF2Q86WG5 1849 aa15.19■□□□□ 0.02
SPTLC1-201ENST00000262554 GOLGA6L4A6NEF3 574 aa15.18■□□□□ 0.02
SPTLC1-201ENST00000262554 GNAT2P19087 354 aa15.18■□□□□ 0.02
SPTLC1-201ENST00000262554 NBPF5PQ86XG9 351 aaPredicted RBP15.18■□□□□ 0.02
SPTLC1-201ENST00000262554 TBC1D10CQ8IV04 446 aa15.18■□□□□ 0.02
SPTLC1-201ENST00000262554 NAPBQ9H115 298 aa15.18■□□□□ 0.02
SPTLC1-201ENST00000262554 GPHNQ9NQX3 736 aaPredicted RBP15.18■□□□□ 0.02
SPTLC1-201ENST00000262554 LRP2BPQ9P2M1 347 aa15.18■□□□□ 0.02
SPTLC1-201ENST00000262554 TFIP11Q9UBB9 837 aaKnown RBP15.18■□□□□ 0.02
SPTLC1-201ENST00000262554 CFAP45Q9UL16 551 aa15.18■□□□□ 0.02
SPTLC1-201ENST00000262554 GOLGA8BA8MQT2 603 aa15.18■□□□□ 0.02
SPTLC1-201ENST00000262554 LEO1Q8WVC0 666 aaPredicted RBP15.18■□□□□ 0.02
SPTLC1-201ENST00000262554 GJD4Q96KN9 370 aaPredicted RBP15.18■□□□□ 0.02
SPTLC1-201ENST00000262554 NLRP3Q96P20 1036 aa15.18■□□□□ 0.02
SPTLC1-201ENST00000262554 SRP68Q9UHB9 627 aaKnown RBP15.18■□□□□ 0.02
SPTLC1-201ENST00000262554 ZNF804BA4D1E1 1349 aa15.17■□□□□ 0.02
SPTLC1-201ENST00000262554 CARMIL3Q8ND23 1372 aa15.17■□□□□ 0.02
SPTLC1-201ENST00000262554 CAVIN4Q5BKX8 364 aa15.17■□□□□ 0.02
SPTLC1-201ENST00000262554 FAM182BQ5T319 152 aa15.17■□□□□ 0.02
SPTLC1-201ENST00000262554 SMIM5Q71RC9 77 aa15.17■□□□□ 0.02
SPTLC1-201ENST00000262554 IFNL3Q8IZI9 196 aa15.17■□□□□ 0.02
SPTLC1-201ENST00000262554 NACAP1Q9BZK3 213 aa15.17■□□□□ 0.02
SPTLC1-201ENST00000262554 ARMT1Q9H993 441 aa15.17■□□□□ 0.02
SPTLC1-201ENST00000262554 MINPP1Q9UNW1 487 aa15.17■□□□□ 0.02
SPTLC1-201ENST00000262554 PNPLA7Q6ZV29 1317 aa15.17■□□□□ 0.02
SPTLC1-201ENST00000262554 CACNB1Q02641 598 aaPredicted RBP15.16■□□□□ 0.02
SPTLC1-201ENST00000262554 TPTE2Q6XPS3 522 aa15.16■□□□□ 0.02
SPTLC1-201ENST00000262554 ANGEL1Q9UNK9 670 aaKnown RBP15.16■□□□□ 0.02
SPTLC1-201ENST00000262554 CPLX1O14810 134 aa15.16■□□□□ 0.02
SPTLC1-201ENST00000262554 GYG1P46976 350 aa15.16■□□□□ 0.02
SPTLC1-201ENST00000262554 FOSBP53539 338 aa15.16■□□□□ 0.02
SPTLC1-201ENST00000262554 VPS37DQ86XT2 251 aa15.16■□□□□ 0.02
SPTLC1-201ENST00000262554 RNF214Q8ND24 703 aa15.16■□□□□ 0.02
SPTLC1-201ENST00000262554 TMEM87BQ96K49 555 aa15.16■□□□□ 0.02
SPTLC1-201ENST00000262554 HPS5Q9UPZ3 1129 aa15.16■□□□□ 0.02
SPTLC1-201ENST00000262554 C4AP0C0L4 1744 aa15.15■□□□□ 0.02
SPTLC1-201ENST00000262554 C4BP0C0L5 1744 aa15.15■□□□□ 0.02
SPTLC1-201ENST00000262554 TIAM2Q8IVF5 1701 aa15.15■□□□□ 0.02
SPTLC1-201ENST00000262554 GSG1L2A8MUP6 293 aa15.15■□□□□ 0.02
SPTLC1-201ENST00000262554 B4E1Z4 1266 aa15.15■□□□□ 0.02
SPTLC1-201ENST00000262554 RPS8P62241 208 aaKnown RBP15.15■□□□□ 0.02
SPTLC1-201ENST00000262554 ATL3Q6DD88 541 aa15.15■□□□□ 0.02
SPTLC1-201ENST00000262554 CYB5R4Q7L1T6 521 aa15.15■□□□□ 0.02
SPTLC1-201ENST00000262554 CELF1Q92879 486 aaKnown RBP15.15■□□□□ 0.02
SPTLC1-201ENST00000262554 CNNM2Q9H8M5 875 aa15.15■□□□□ 0.02
SPTLC1-201ENST00000262554 EPB41L4AQ9HCS5 686 aaPredicted RBP15.15■□□□□ 0.02
SPTLC1-201ENST00000262554 IQSEC3Q9UPP2 1182 aaPredicted RBP15.15■□□□□ 0.02
SPTLC1-201ENST00000262554 SLC4A4Q9Y6R1 1079 aa15.15■□□□□ 0.02
SPTLC1-201ENST00000262554 MYH13Q9UKX3 1938 aa15.15■□□□□ 0.02
SPTLC1-201ENST00000262554 SH2B2O14492 632 aaPredicted RBP15.14■□□□□ 0.01
SPTLC1-201ENST00000262554 FDPSP14324 419 aaKnown RBP15.14■□□□□ 0.01
SPTLC1-201ENST00000262554 LCORLQ8N3X6 602 aa15.14■□□□□ 0.01
SPTLC1-201ENST00000262554 ARHGEF1Q92888 912 aaKnown RBP15.14■□□□□ 0.01
SPTLC1-201ENST00000262554 ZNF396Q96N95 335 aaPredicted RBP15.14■□□□□ 0.01
SPTLC1-201ENST00000262554 KRT23Q9C075 422 aa15.14■□□□□ 0.01
SPTLC1-201ENST00000262554 RRAGDQ9NQL2 400 aaPredicted RBP15.14■□□□□ 0.01
SPTLC1-201ENST00000262554 DENND2AQ9ULE3 1009 aa15.14■□□□□ 0.01
SPTLC1-201ENST00000262554 CYP7A1P22680 504 aa15.14■□□□□ 0.01
SPTLC1-201ENST00000262554 TDO2P48775 406 aa15.14■□□□□ 0.01
SPTLC1-201ENST00000262554 UVSSAQ2YD98 709 aa15.14■□□□□ 0.01
SPTLC1-201ENST00000262554 PDLIM2Q96JY6 352 aa15.14■□□□□ 0.01
SPTLC1-201ENST00000262554 ANKRD2Q9GZV1 360 aa15.14■□□□□ 0.01
SPTLC1-201ENST00000262554 RAI14Q9P0K7 980 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms