RNA–Protein interactions for RNA: ENST00000261517.9

VPS13C-202, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 13,400 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-202ENST00000261517 CHPF2Q9P2E5 772 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 C6orf229H3BNL8 230 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 EYA2O00167 538 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 TERF1P54274 439 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 TRAPPC3LQ5T215 181 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 CNNM4Q6P4Q7 775 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 ZNF790Q6PG37 636 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 KIFAP3Q92845 792 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 RPGRIP1Q96KN7 1286 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.89□□□□□ -1.63
VPS13C-202ENST00000261517 V9GYY5 206 aaPredicted RBP4.89□□□□□ -1.63
VPS13C-202ENST00000261517 SOS2Q07890 1332 aaPredicted RBP4.89□□□□□ -1.63
VPS13C-202ENST00000261517 KRT25Q7Z3Z0 450 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 TSNARE1Q96NA8 513 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 MINDY4BA8MYZ0 360 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 PPP2R3AQ06190 1150 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 PABPC4Q13310 644 aaKnown RBP eCLIP4.89□□□□□ -1.633e-8■■□□□ 11.4
VPS13C-202ENST00000261517 ORC2Q13416 577 aaPredicted RBP4.89□□□□□ -1.63
VPS13C-202ENST00000261517 USP6P35125 1406 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 STAT6P42226 847 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 RUFY3Q7L099 469 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 HACE1Q8IYU2 909 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 APPBP2Q92624 585 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 CARD10Q9BWT7 1032 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 LRRIQ1Q96JM4 1722 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 PTCD1O75127 700 aaKnown RBP4.89□□□□□ -1.63
VPS13C-202ENST00000261517 VIMP08670 466 aaKnown RBP4.89□□□□□ -1.63
VPS13C-202ENST00000261517 ATP2A2P16615 1042 aaKnown RBP4.89□□□□□ -1.63
VPS13C-202ENST00000261517 GJB2P29033 226 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 SMTNP53814 917 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 KRT79Q5XKE5 535 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 C10orf67Q8IYJ2 551 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 CYP7A1P22680 504 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 GTF2F1P35269 517 aaKnown RBP eCLIP4.89□□□□□ -1.635e-10■■■■□ 19.5
VPS13C-202ENST00000261517 CCDC65Q8IXS2 484 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 TEKT1Q969V4 418 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 KRT86O43790 486 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 OPA1O60313 960 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 N4BP1O75113 896 aaKnown RBP4.89□□□□□ -1.63
VPS13C-202ENST00000261517 MTIF2P46199 727 aaKnown RBP4.89□□□□□ -1.63
VPS13C-202ENST00000261517 CCDC40Q4G0X9 1142 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 NT5C3AQ9H0P0 336 aa4.89□□□□□ -1.63
VPS13C-202ENST00000261517 ARPP21Q9UBL0 812 aaPredicted RBP4.89□□□□□ -1.63
VPS13C-202ENST00000261517 TACC1O75410 805 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 TRIML1Q8N9V2 468 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 MAIP1Q8WWC4 291 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 RUNDC3BQ96NL0 473 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 NUP88Q99567 741 aaPredicted RBP4.88□□□□□ -1.63
VPS13C-202ENST00000261517 IL1RAPL2Q9NP60 686 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 IRS4O14654 1257 aaPredicted RBP4.88□□□□□ -1.63
VPS13C-202ENST00000261517 NEFHP12036 1026 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 TRAPPC10P48553 1259 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 COPS6Q7L5N1 327 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 SYCP3Q8IZU3 236 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 CNBD1Q8NA66 436 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 CCDC51Q96ER9 411 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 ABCC4O15439 1325 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 SDSP20132 328 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 NUTM1Q86Y26 1132 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 ERVV-1B6SEH8 477 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 IVLP07476 585 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 ZNF710Q8N1W2 664 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 CCDC155Q8N6L0 562 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 DRC1Q96MC2 740 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 MAP3K19Q56UN5 1328 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 ZNF165P49910 485 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 CCDC87Q9NVE4 849 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 STK32BQ9NY57 414 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 SWAP70Q9UH65 585 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 FEZ2Q9UHY8 353 aaPredicted RBP4.88□□□□□ -1.63
VPS13C-202ENST00000261517 CUTAO60888 179 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 ATP5JP18859 108 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 PAF1Q8N7H5 531 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 ALG1Q9BT22 464 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 RBM8AQ9Y5S9 174 aaKnown RBP4.88□□□□□ -1.63
VPS13C-202ENST00000261517 WDR19Q8NEZ3 1342 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 ZHX3Q9H4I2 956 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 ANGEL1Q9UNK9 670 aaKnown RBP4.88□□□□□ -1.63
VPS13C-202ENST00000261517 PXDNLA1KZ92 1463 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 IQGAP1P46940 1657 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 PABPN1LA6NDY0 278 aaKnown RBP4.88□□□□□ -1.63
VPS13C-202ENST00000261517 PARP1P09874 1014 aaKnown RBP4.88□□□□□ -1.63
VPS13C-202ENST00000261517 DCAF15Q66K64 600 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 KRT26Q7Z3Y9 468 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 TBC1D2Q9BYX2 928 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 SBDSQ9Y3A5 250 aaKnown RBP eCLIP4.88□□□□□ -1.63
VPS13C-202ENST00000261517 PPLO60437 1756 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 UBAP1LF5GYI3 381 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 CCDC175P0C221 793 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 ADRA2BP18089 450 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 ALDH3A1P30838 453 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 CCDC84Q86UT8 332 aaPredicted RBP4.88□□□□□ -1.63
VPS13C-202ENST00000261517 MLKLQ8NB16 471 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 RTEL1Q9NZ71 1219 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 DAAM1Q9Y4D1 1078 aa4.88□□□□□ -1.63
VPS13C-202ENST00000261517 ARHGEF37A1IGU5 675 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 FSD2A1L4K1 749 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 SLC8A3P57103 927 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 CALCOCO1Q9P1Z2 691 aa4.87□□□□□ -1.63
VPS13C-202ENST00000261517 SLC4A4Q9Y6R1 1079 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms