RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 KAT14Q9H8E8 782 aa13.54□□□□□ -0.24
VPS4A-201ENST00000254950 PALD1Q9ULE6 856 aa13.54□□□□□ -0.24
VPS4A-201ENST00000254950 MYO1BO43795 1136 aa13.54□□□□□ -0.24
VPS4A-201ENST00000254950 PICALMQ13492 652 aa13.54□□□□□ -0.24
VPS4A-201ENST00000254950 SPATA32Q96LK8 384 aa13.54□□□□□ -0.24
VPS4A-201ENST00000254950 MINPP1Q9UNW1 487 aa13.54□□□□□ -0.24
VPS4A-201ENST00000254950 USP42Q9H9J4 1324 aaKnown RBP13.53□□□□□ -0.24
VPS4A-201ENST00000254950 NPR1P16066 1061 aa13.53□□□□□ -0.24
VPS4A-201ENST00000254950 MFSD14BQ5SR56 506 aa13.53□□□□□ -0.24
VPS4A-201ENST00000254950 AATFQ9NY61 560 aaKnown RBP eCLIP13.53□□□□□ -0.24
VPS4A-201ENST00000254950 STX8Q9UNK0 236 aa13.53□□□□□ -0.24
VPS4A-201ENST00000254950 GTF2IP78347 998 aa13.53□□□□□ -0.24
VPS4A-201ENST00000254950 CCDC144CPQ8IYA2 1237 aa13.53□□□□□ -0.24
VPS4A-201ENST00000254950 PIBF1Q8WXW3 757 aa13.53□□□□□ -0.24
VPS4A-201ENST00000254950 NOL7Q9UMY1 257 aaKnown RBP13.53□□□□□ -0.24
VPS4A-201ENST00000254950 UBN2Q6ZU65 1347 aa13.53□□□□□ -0.24
VPS4A-201ENST00000254950 LMO7Q8WWI1 1683 aa13.53□□□□□ -0.24
VPS4A-201ENST00000254950 TSPY3P0CV98 308 aa13.53□□□□□ -0.24
VPS4A-201ENST00000254950 TSPY8P0CW00 308 aa13.53□□□□□ -0.24
VPS4A-201ENST00000254950 ME1P48163 572 aa13.53□□□□□ -0.24
VPS4A-201ENST00000254950 GUCY1B3Q02153 619 aa13.53□□□□□ -0.24
VPS4A-201ENST00000254950 EN1Q05925 392 aaPredicted RBP13.53□□□□□ -0.24
VPS4A-201ENST00000254950 APOBRQ0VD83 1088 aa13.53□□□□□ -0.24
VPS4A-201ENST00000254950 IFIT1BQ5T764 474 aaKnown RBP13.53□□□□□ -0.24
VPS4A-201ENST00000254950 SDF4Q9BRK5 362 aa13.53□□□□□ -0.24
VPS4A-201ENST00000254950 DLG5Q8TDM6 1919 aa13.52□□□□□ -0.24
VPS4A-201ENST00000254950 PATL2C9JE40 543 aaKnown RBP13.52□□□□□ -0.24
VPS4A-201ENST00000254950 SNAP23O00161 211 aa13.52□□□□□ -0.24
VPS4A-201ENST00000254950 LARGE2Q8N3Y3 721 aa13.52□□□□□ -0.24
VPS4A-201ENST00000254950 KINO60870 393 aaKnown RBP13.52□□□□□ -0.25
VPS4A-201ENST00000254950 RASGRF1Q13972 1273 aa13.52□□□□□ -0.25
VPS4A-201ENST00000254950 B4E1Z4 1266 aa13.52□□□□□ -0.25
VPS4A-201ENST00000254950 SCAND2PQ9GZW5 306 aaPredicted RBP13.52□□□□□ -0.25
VPS4A-201ENST00000254950 ADD2P35612 726 aa13.51□□□□□ -0.25
VPS4A-201ENST00000254950 RTN1Q16799 776 aa13.51□□□□□ -0.25
VPS4A-201ENST00000254950 TTC6Q86TZ1 520 aa13.51□□□□□ -0.25
VPS4A-201ENST00000254950 TMEM87BQ96K49 555 aa13.51□□□□□ -0.25
VPS4A-201ENST00000254950 BECN2A8MW95 431 aa13.51□□□□□ -0.25
VPS4A-201ENST00000254950 MCAMP43121 646 aa13.51□□□□□ -0.25
VPS4A-201ENST00000254950 SASS6Q6UVJ0 657 aa13.51□□□□□ -0.25
VPS4A-201ENST00000254950 ZNF589Q86UQ0 364 aaPredicted RBP13.51□□□□□ -0.25
VPS4A-201ENST00000254950 PPIP5K2O43314 1243 aa13.51□□□□□ -0.25
VPS4A-201ENST00000254950 CABP5Q9NP86 173 aa13.51□□□□□ -0.25
VPS4A-201ENST00000254950 TULP1O00294 542 aaPredicted RBP13.5□□□□□ -0.25
VPS4A-201ENST00000254950 MASTLQ96GX5 879 aa13.5□□□□□ -0.25
VPS4A-201ENST00000254950 SEC63Q9UGP8 760 aaKnown RBP13.5□□□□□ -0.25
VPS4A-201ENST00000254950 E7EWF7 191 aa13.5□□□□□ -0.25
VPS4A-201ENST00000254950 GOLGA6L19H0YKK7 550 aa13.5□□□□□ -0.25
VPS4A-201ENST00000254950 BAG4O95429 457 aaKnown RBP13.5□□□□□ -0.25
VPS4A-201ENST00000254950 FGAP02671 866 aa13.5□□□□□ -0.25
VPS4A-201ENST00000254950 SLC26A6Q9BXS9 759 aa13.5□□□□□ -0.25
VPS4A-201ENST00000254950 PPFIA3O75145 1194 aa13.5□□□□□ -0.25
VPS4A-201ENST00000254950 ZSCAN22P10073 491 aaPredicted RBP13.5□□□□□ -0.25
VPS4A-201ENST00000254950 CASP7P55210 303 aa13.5□□□□□ -0.25
VPS4A-201ENST00000254950 CCDC96Q2M329 555 aa13.5□□□□□ -0.25
VPS4A-201ENST00000254950 PRR5LQ6MZQ0 368 aa13.5□□□□□ -0.25
VPS4A-201ENST00000254950 LETM1O95202 739 aaPredicted RBP13.49□□□□□ -0.25
VPS4A-201ENST00000254950 PPP4R3BQ5MIZ7 849 aa13.49□□□□□ -0.25
VPS4A-201ENST00000254950 RASEFQ8IZ41 740 aa13.49□□□□□ -0.25
VPS4A-201ENST00000254950 BRIP1Q9BX63 1249 aa13.49□□□□□ -0.25
VPS4A-201ENST00000254950 AHDC1Q5TGY3 1603 aaPredicted RBP13.49□□□□□ -0.25
VPS4A-201ENST00000254950 TTLL5Q6EMB2 1281 aa13.49□□□□□ -0.25
VPS4A-201ENST00000254950 IFNL3Q8IZI9 196 aa13.49□□□□□ -0.25
VPS4A-201ENST00000254950 OSBP2Q969R2 916 aa13.49□□□□□ -0.25
VPS4A-201ENST00000254950 ANGEL1Q9UNK9 670 aaKnown RBP13.49□□□□□ -0.25
VPS4A-201ENST00000254950 RGL2O15211 777 aa13.49□□□□□ -0.25
VPS4A-201ENST00000254950 ZSWIM6Q9HCJ5 1215 aa13.49□□□□□ -0.25
VPS4A-201ENST00000254950 PIH1D3Q9NQM4 214 aaKnown RBP13.49□□□□□ -0.25
VPS4A-201ENST00000254950 RTL9Q8NET4 1388 aa13.49□□□□□ -0.25
VPS4A-201ENST00000254950 ALS2Q96Q42 1657 aa13.49□□□□□ -0.25
VPS4A-201ENST00000254950 FAM208AQ9UK61 1670 aaKnown RBP13.49□□□□□ -0.25
VPS4A-201ENST00000254950 GNAQP50148 359 aa13.49□□□□□ -0.25
VPS4A-201ENST00000254950 CC2D2BQ6DHV5 1058 aa13.49□□□□□ -0.25
VPS4A-201ENST00000254950 ABCC12Q96J65 1359 aa13.49□□□□□ -0.25
VPS4A-201ENST00000254950 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.48□□□□□ -0.25
VPS4A-201ENST00000254950 CALM1P0DP23 149 aa13.48□□□□□ -0.25
VPS4A-201ENST00000254950 CALM2P0DP24 149 aa13.48□□□□□ -0.25
VPS4A-201ENST00000254950 CALM3P0DP25 149 aa13.48□□□□□ -0.25
VPS4A-201ENST00000254950 DOK7Q18PE1 504 aa13.48□□□□□ -0.25
VPS4A-201ENST00000254950 AKNAD1Q5T1N1 836 aa13.48□□□□□ -0.25
VPS4A-201ENST00000254950 TTF2Q9UNY4 1162 aaKnown RBP13.48□□□□□ -0.25
VPS4A-201ENST00000254950 RFX7Q2KHR2 1363 aa13.48□□□□□ -0.25
VPS4A-201ENST00000254950 TRPM3Q9HCF6 1732 aaPredicted RBP13.48□□□□□ -0.25
VPS4A-201ENST00000254950 CCDC47Q96A33 483 aaKnown RBP13.48□□□□□ -0.25
VPS4A-201ENST00000254950 PARP4Q9UKK3 1724 aaKnown RBP13.48□□□□□ -0.25
VPS4A-201ENST00000254950 PHRF1Q9P1Y6 1649 aaKnown RBP13.48□□□□□ -0.25
VPS4A-201ENST00000254950 ZSCAN16Q9H4T2 348 aaPredicted RBP13.48□□□□□ -0.25
VPS4A-201ENST00000254950 NIM1KQ8IY84 436 aa13.47□□□□□ -0.25
VPS4A-201ENST00000254950 SAP30BPQ9UHR5 308 aaKnown RBP13.47□□□□□ -0.25
VPS4A-201ENST00000254950 USP17L12C9JPN9 530 aa13.47□□□□□ -0.25
VPS4A-201ENST00000254950 USP17L21D6R901 530 aa13.47□□□□□ -0.25
VPS4A-201ENST00000254950 CTDSPL2Q05D32 466 aa13.47□□□□□ -0.25
VPS4A-201ENST00000254950 ALG1Q9BT22 464 aa13.47□□□□□ -0.25
VPS4A-201ENST00000254950 PTPDC1A2A3K4 754 aa13.47□□□□□ -0.25
VPS4A-201ENST00000254950 M0R2C6 588 aa13.47□□□□□ -0.25
VPS4A-201ENST00000254950 CYP2E1P05181 493 aaPredicted RBP13.47□□□□□ -0.25
VPS4A-201ENST00000254950 TXLNAP40222 546 aa13.47□□□□□ -0.25
VPS4A-201ENST00000254950 TEKT1Q969V4 418 aa13.47□□□□□ -0.25
VPS4A-201ENST00000254950 ZKSCAN3Q9BRR0 538 aa13.47□□□□□ -0.25
VPS4A-201ENST00000254950 VEZTQ9HBM0 779 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms