RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 SPATA24Q86W54 205 aa14.44□□□□□ -0.1
USP40-201ENST00000251722 VTI1AQ96AJ9 217 aa14.44□□□□□ -0.1
USP40-201ENST00000251722 TRIM47Q96LD4 638 aa14.44□□□□□ -0.1
USP40-201ENST00000251722 CEP120Q8N960 986 aa14.44□□□□□ -0.1
USP40-201ENST00000251722 FAM135BQ49AJ0 1406 aa14.44□□□□□ -0.1
USP40-201ENST00000251722 ITGA6P23229 1130 aa14.44□□□□□ -0.1
USP40-201ENST00000251722 NMIQ13287 307 aaPredicted RBP14.44□□□□□ -0.1
USP40-201ENST00000251722 HS2ST1Q7LGA3 356 aa14.44□□□□□ -0.1
USP40-201ENST00000251722 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.43□□□□□ -0.1
USP40-201ENST00000251722 TFCP2Q12800 502 aa14.43□□□□□ -0.1
USP40-201ENST00000251722 C20orf194Q5TEA3 1177 aa14.43□□□□□ -0.1
USP40-201ENST00000251722 MRPS27Q92552 414 aaKnown RBP14.43□□□□□ -0.1
USP40-201ENST00000251722 SNX21Q969T3 373 aa14.43□□□□□ -0.1
USP40-201ENST00000251722 TBC1D32Q96NH3 1257 aa14.43□□□□□ -0.1
USP40-201ENST00000251722 SEPT6Q14141 434 aa14.43□□□□□ -0.1
USP40-201ENST00000251722 AS3MTQ9HBK9 375 aa14.43□□□□□ -0.1
USP40-201ENST00000251722 RBM26Q5T8P6 1007 aaKnown RBP14.43□□□□□ -0.1
USP40-201ENST00000251722 PHACTR2O75167 634 aa14.43□□□□□ -0.1
USP40-201ENST00000251722 BEGAINQ9BUH8 593 aa14.43□□□□□ -0.1
USP40-201ENST00000251722 SPATS2LQ9NUQ6 558 aaKnown RBP14.43□□□□□ -0.1
USP40-201ENST00000251722 SYCE3A1L190 88 aa14.42□□□□□ -0.1
USP40-201ENST00000251722 CHL1O00533 1208 aa14.42□□□□□ -0.1
USP40-201ENST00000251722 CAMK4Q16566 473 aa14.42□□□□□ -0.1
USP40-201ENST00000251722 LARGE2Q8N3Y3 721 aa14.42□□□□□ -0.1
USP40-201ENST00000251722 IBSPP21815 317 aaPredicted RBP14.42□□□□□ -0.1
USP40-201ENST00000251722 TCIRG1Q13488 830 aa14.42□□□□□ -0.1
USP40-201ENST00000251722 LMBR1Q8WVP7 490 aa14.42□□□□□ -0.1
USP40-201ENST00000251722 CLIP2Q9UDT6 1046 aa14.42□□□□□ -0.1
USP40-201ENST00000251722 FAM13AO94988 1023 aa14.42□□□□□ -0.1
USP40-201ENST00000251722 CYLC1P35663 651 aaPredicted RBP14.42□□□□□ -0.1
USP40-201ENST00000251722 Q6ZUG5 572 aa14.42□□□□□ -0.1
USP40-201ENST00000251722 BICC1Q9H694 974 aaKnown RBP14.42□□□□□ -0.1
USP40-201ENST00000251722 KDM5AP29375 1690 aaKnown RBP14.42□□□□□ -0.1
USP40-201ENST00000251722 ATP7BP35670 1465 aa14.42□□□□□ -0.1
USP40-201ENST00000251722 MYOM2P54296 1465 aa14.42□□□□□ -0.1
USP40-201ENST00000251722 RPL13P26373 211 aaKnown RBP14.42□□□□□ -0.1
USP40-201ENST00000251722 ARHGEF6Q15052 776 aa14.42□□□□□ -0.1
USP40-201ENST00000251722 CNKSR1Q969H4 720 aa14.42□□□□□ -0.1
USP40-201ENST00000251722 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.42□□□□□ -0.1
USP40-201ENST00000251722 UGGT1Q9NYU2 1555 aa14.42□□□□□ -0.1
USP40-201ENST00000251722 HMGB1P1B2RPK0 211 aaPredicted RBP14.41□□□□□ -0.1
USP40-201ENST00000251722 PABPC4Q13310 644 aaKnown RBP eCLIP14.41□□□□□ -0.1
USP40-201ENST00000251722 RNF187Q5TA31 235 aaPredicted RBP14.41□□□□□ -0.1
USP40-201ENST00000251722 ORAI2Q96SN7 254 aa14.41□□□□□ -0.1
USP40-201ENST00000251722 IBTKQ9P2D0 1353 aaPredicted RBP14.41□□□□□ -0.1
USP40-201ENST00000251722 GCC2Q8IWJ2 1684 aa14.41□□□□□ -0.1
USP40-201ENST00000251722 STAMBPO95630 424 aa14.41□□□□□ -0.1
USP40-201ENST00000251722 APBA3O96018 575 aa14.41□□□□□ -0.1
USP40-201ENST00000251722 GOPCQ9HD26 462 aa14.41□□□□□ -0.1
USP40-201ENST00000251722 ZRANB1Q9UGI0 708 aa14.41□□□□□ -0.1
USP40-201ENST00000251722 IVNS1ABPQ9Y6Y0 642 aa14.41□□□□□ -0.1
USP40-201ENST00000251722 ZBED4O75132 1171 aa14.41□□□□□ -0.1
USP40-201ENST00000251722 ATP2B4P23634 1241 aa14.41□□□□□ -0.1
USP40-201ENST00000251722 NOLC1Q14978 699 aaKnown RBP eCLIP14.41□□□□□ -0.1
USP40-201ENST00000251722 APPBP2Q92624 585 aa14.41□□□□□ -0.1
USP40-201ENST00000251722 INTS4Q96HW7 963 aaKnown RBP14.41□□□□□ -0.1
USP40-201ENST00000251722 AATKQ6ZMQ8 1374 aa14.41□□□□□ -0.1
USP40-201ENST00000251722 HECW2Q9P2P5 1572 aa14.41□□□□□ -0.1
USP40-201ENST00000251722 FAM98CQ17RN3 349 aaKnown RBP14.41□□□□□ -0.1
USP40-201ENST00000251722 CCDC144CPQ8IYA2 1237 aa14.41□□□□□ -0.1
USP40-201ENST00000251722 NLGN1Q8N2Q7 840 aa14.41□□□□□ -0.1
USP40-201ENST00000251722 RIMBP2O15034 1052 aa14.41□□□□□ -0.1
USP40-201ENST00000251722 SECISBP2LQ93073 1101 aaKnown RBP14.41□□□□□ -0.1
USP40-201ENST00000251722 TSNARE1Q96NA8 513 aa14.41□□□□□ -0.1
USP40-201ENST00000251722 HSPA4P34932 840 aa14.4□□□□□ -0.1
USP40-201ENST00000251722 TUBB4BP68371 445 aa14.4□□□□□ -0.1
USP40-201ENST00000251722 PLS1Q14651 629 aa14.4□□□□□ -0.1
USP40-201ENST00000251722 NAA25Q14CX7 972 aa14.4□□□□□ -0.1
USP40-201ENST00000251722 KIF4BQ2VIQ3 1234 aa14.4□□□□□ -0.1
USP40-201ENST00000251722 HAUS3Q68CZ6 603 aa14.4□□□□□ -0.1
USP40-201ENST00000251722 PLCD1P51178 756 aa14.4□□□□□ -0.1
USP40-201ENST00000251722 SNX16P57768 344 aa14.4□□□□□ -0.1
USP40-201ENST00000251722 USP48Q86UV5 1035 aa14.4□□□□□ -0.1
USP40-201ENST00000251722 LLPHQ9BRT6 129 aaKnown RBP14.4□□□□□ -0.1
USP40-201ENST00000251722 GSTTP1A0A1W2PQM5 241 aa14.4□□□□□ -0.1
USP40-201ENST00000251722 H7C1D1 291 aa14.4□□□□□ -0.1
USP40-201ENST00000251722 MAP3K9P80192 1104 aa14.4□□□□□ -0.1
USP40-201ENST00000251722 RRAGBQ5VZM2 374 aa14.4□□□□□ -0.1
USP40-201ENST00000251722 TMX3Q96JJ7 454 aa14.4□□□□□ -0.1
USP40-201ENST00000251722 FAM196AQ6ZSG2 479 aa14.4□□□□□ -0.1
USP40-201ENST00000251722 CCDC50Q8IVM0 306 aa14.4□□□□□ -0.1
USP40-201ENST00000251722 SREK1Q8WXA9 508 aaKnown RBP14.4□□□□□ -0.1
USP40-201ENST00000251722 TNNI3KQ59H18 835 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 CDAN1Q8IWY9 1227 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 SPAG5Q96R06 1193 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 SYNCQ9H7C4 482 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 CEP83Q9Y592 693 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 FPGT-TNNI3KV9GXZ4 949 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 CKAP4Q07065 602 aaKnown RBP14.39□□□□□ -0.11
USP40-201ENST00000251722 DBN1Q16643 649 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 DCAF15Q66K64 600 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 CARD14Q9BXL6 1004 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 EXOC7Q9UPT5 735 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 SSX2IPQ9Y2D8 614 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 THRAP3Q9Y2W1 955 aaKnown RBP14.39□□□□□ -0.11
USP40-201ENST00000251722 CLASP1Q7Z460 1538 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 PRIM1P49642 420 aaKnown RBP14.39□□□□□ -0.11
USP40-201ENST00000251722 POTEDQ86YR6 584 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 MPNDQ8N594 471 aa14.39□□□□□ -0.11
USP40-201ENST00000251722 CWF19L2Q2TBE0 894 aaKnown RBP14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms