RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 PDCD2Q16342 344 aaPredicted RBP14.84□□□□□ -0.03
MSH2-201ENST00000233146 FAM228AQ86W67 206 aa14.84□□□□□ -0.03
MSH2-201ENST00000233146 CEP57Q86XR8 500 aa14.84□□□□□ -0.03
MSH2-201ENST00000233146 PAGR1Q9BTK6 254 aa14.84□□□□□ -0.03
MSH2-201ENST00000233146 IBSPP21815 317 aaPredicted RBP14.84□□□□□ -0.03
MSH2-201ENST00000233146 PRPHP41219 470 aa14.84□□□□□ -0.03
MSH2-201ENST00000233146 SNCBQ16143 134 aa14.84□□□□□ -0.03
MSH2-201ENST00000233146 DRAXINQ8NBI3 349 aaPredicted RBP14.84□□□□□ -0.03
MSH2-201ENST00000233146 FMNL2Q96PY5 1086 aa14.84□□□□□ -0.03
MSH2-201ENST00000233146 SH3GL2Q99962 352 aa14.84□□□□□ -0.03
MSH2-201ENST00000233146 RABEP2Q9H5N1 569 aa14.84□□□□□ -0.03
MSH2-201ENST00000233146 HOMER3Q9NSC5 361 aa14.84□□□□□ -0.03
MSH2-201ENST00000233146 GOLGA6CA6NDK9 693 aa14.83□□□□□ -0.04
MSH2-201ENST00000233146 AGPSO00116 658 aa14.83□□□□□ -0.04
MSH2-201ENST00000233146 GOLGA6DP0CG33 693 aa14.83□□□□□ -0.04
MSH2-201ENST00000233146 TOP1P11387 765 aaKnown RBP14.83□□□□□ -0.04
MSH2-201ENST00000233146 GNGT1P63211 74 aa14.83□□□□□ -0.04
MSH2-201ENST00000233146 STIM1Q13586 685 aa14.83□□□□□ -0.04
MSH2-201ENST00000233146 ZBTB10Q96DT7 871 aa14.83□□□□□ -0.04
MSH2-201ENST00000233146 SAAL1Q96ER3 474 aa14.83□□□□□ -0.04
MSH2-201ENST00000233146 SLC40A1Q9NP59 571 aa14.83□□□□□ -0.04
MSH2-201ENST00000233146 GOLGA6AQ9NYA3 693 aa14.83□□□□□ -0.04
MSH2-201ENST00000233146 CPSF1Q10570 1443 aaKnown RBP14.83□□□□□ -0.04
MSH2-201ENST00000233146 RAB27AP51159 221 aa14.83□□□□□ -0.04
MSH2-201ENST00000233146 PSMD2Q13200 908 aa14.83□□□□□ -0.04
MSH2-201ENST00000233146 SNX1Q13596 522 aa14.83□□□□□ -0.04
MSH2-201ENST00000233146 CCDC50Q8IVM0 306 aa14.83□□□□□ -0.04
MSH2-201ENST00000233146 COG1Q8WTW3 980 aa14.83□□□□□ -0.04
MSH2-201ENST00000233146 SPDL1Q96EA4 605 aa14.83□□□□□ -0.04
MSH2-201ENST00000233146 MRPL44Q9H9J2 332 aaKnown RBP14.83□□□□□ -0.04
MSH2-201ENST00000233146 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.83□□□□□ -0.04
MSH2-201ENST00000233146 CEBPZQ03701 1054 aaKnown RBP14.82□□□□□ -0.04
MSH2-201ENST00000233146 TBX2Q13207 712 aaPredicted RBP14.82□□□□□ -0.04
MSH2-201ENST00000233146 PRPF40BQ6NWY9 871 aaKnown RBP14.82□□□□□ -0.04
MSH2-201ENST00000233146 TTLL7Q6ZT98 887 aa14.82□□□□□ -0.04
MSH2-201ENST00000233146 FMR1NBQ8N0W7 255 aaPredicted RBP14.82□□□□□ -0.04
MSH2-201ENST00000233146 FSIP1Q8NA03 581 aa14.82□□□□□ -0.04
MSH2-201ENST00000233146 ZNF526Q8TF50 670 aaPredicted RBP14.82□□□□□ -0.04
MSH2-201ENST00000233146 PUS7Q96PZ0 661 aaKnown RBP14.82□□□□□ -0.04
MSH2-201ENST00000233146 BATF3Q9NR55 127 aa14.82□□□□□ -0.04
MSH2-201ENST00000233146 MYH15Q9Y2K3 1946 aa14.82□□□□□ -0.04
MSH2-201ENST00000233146 PFKFB2O60825 505 aa14.82□□□□□ -0.04
MSH2-201ENST00000233146 PTH1RQ03431 593 aa14.82□□□□□ -0.04
MSH2-201ENST00000233146 CTAGE15A4D2H0 777 aa14.82□□□□□ -0.04
MSH2-201ENST00000233146 CTAGE8P0CG41 777 aa14.82□□□□□ -0.04
MSH2-201ENST00000233146 PDHBP11177 359 aa14.82□□□□□ -0.04
MSH2-201ENST00000233146 AMPHP49418 695 aa14.82□□□□□ -0.04
MSH2-201ENST00000233146 NLRP12P59046 1061 aa14.82□□□□□ -0.04
MSH2-201ENST00000233146 MTA1Q13330 715 aa14.82□□□□□ -0.04
MSH2-201ENST00000233146 KIAA1328Q86T90 577 aa14.82□□□□□ -0.04
MSH2-201ENST00000233146 CTAGE6Q86UF2 777 aa14.82□□□□□ -0.04
MSH2-201ENST00000233146 CTAGE4Q8IX94 777 aa14.82□□□□□ -0.04
MSH2-201ENST00000233146 LMBR1Q8WVP7 490 aa14.82□□□□□ -0.04
MSH2-201ENST00000233146 JPH4Q96JJ6 628 aa14.82□□□□□ -0.04
MSH2-201ENST00000233146 ABCA8O94911 1581 aa14.82□□□□□ -0.04
MSH2-201ENST00000233146 NPHP4O75161 1426 aaPredicted RBP14.81□□□□□ -0.04
MSH2-201ENST00000233146 PARP9Q8IXQ6 854 aa14.81□□□□□ -0.04
MSH2-201ENST00000233146 CCDC13Q8IYE1 715 aa14.81□□□□□ -0.04
MSH2-201ENST00000233146 NOA1Q8NC60 698 aaKnown RBP14.81□□□□□ -0.04
MSH2-201ENST00000233146 PI4K2BQ8TCG2 481 aa14.81□□□□□ -0.04
MSH2-201ENST00000233146 SDF4Q9BRK5 362 aa14.81□□□□□ -0.04
MSH2-201ENST00000233146 PIP4K2BP78356 416 aa14.81□□□□□ -0.04
MSH2-201ENST00000233146 C1QTNF12Q5T7M4 302 aa14.81□□□□□ -0.04
MSH2-201ENST00000233146 OR8K1Q8NGG5 319 aa14.81□□□□□ -0.04
MSH2-201ENST00000233146 DDX54Q8TDD1 881 aaKnown RBP14.81□□□□□ -0.04
MSH2-201ENST00000233146 GGNBP2Q9H3C7 697 aa14.81□□□□□ -0.04
MSH2-201ENST00000233146 CENPHQ9H3R5 247 aa14.81□□□□□ -0.04
MSH2-201ENST00000233146 CARMIL2Q6F5E8 1435 aa14.81□□□□□ -0.04
MSH2-201ENST00000233146 TMEM232C9JQI7 657 aa14.81□□□□□ -0.04
MSH2-201ENST00000233146 NDUFAB1O14561 156 aa14.81□□□□□ -0.04
MSH2-201ENST00000233146 GNAI2P04899 355 aa14.81□□□□□ -0.04
MSH2-201ENST00000233146 CCT2P78371 535 aaKnown RBP14.81□□□□□ -0.04
MSH2-201ENST00000233146 KCNB1Q14721 858 aa14.81□□□□□ -0.04
MSH2-201ENST00000233146 NECTIN1Q15223 517 aa14.81□□□□□ -0.04
MSH2-201ENST00000233146 WHAMMP3Q1A5X7 153 aa14.81□□□□□ -0.04
MSH2-201ENST00000233146 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.81□□□□□ -0.04
MSH2-201ENST00000233146 SYCP2Q9BX26 1530 aa14.81□□□□□ -0.04
MSH2-201ENST00000233146 SETBP1Q9Y6X0 1596 aa14.8□□□□□ -0.04
MSH2-201ENST00000233146 NEDD4P46934 1319 aa14.8□□□□□ -0.04
MSH2-201ENST00000233146 RAB11FIP3O75154 756 aa14.8□□□□□ -0.04
MSH2-201ENST00000233146 NEFHP12036 1026 aa14.8□□□□□ -0.04
MSH2-201ENST00000233146 CDR1P51861 262 aa14.8□□□□□ -0.04
MSH2-201ENST00000233146 SF3B2Q13435 895 aaKnown RBP14.8□□□□□ -0.04
MSH2-201ENST00000233146 CFAP100Q494V2 611 aa14.8□□□□□ -0.04
MSH2-201ENST00000233146 MICALCLQ6ZW33 695 aa14.8□□□□□ -0.04
MSH2-201ENST00000233146 SPDYE1Q8NFV5 336 aaPredicted RBP14.8□□□□□ -0.04
MSH2-201ENST00000233146 BRF1Q92994 677 aa14.8□□□□□ -0.04
MSH2-201ENST00000233146 DESI2Q9BSY9 194 aa14.8□□□□□ -0.04
MSH2-201ENST00000233146 GBP2P32456 591 aaPredicted RBP14.8□□□□□ -0.04
MSH2-201ENST00000233146 TC2NQ8N9U0 490 aa14.8□□□□□ -0.04
MSH2-201ENST00000233146 TCP11Q8WWU5 503 aa14.8□□□□□ -0.04
MSH2-201ENST00000233146 A6NNZ2 444 aa14.79□□□□□ -0.04
MSH2-201ENST00000233146 SERPINC1P01008 464 aa14.79□□□□□ -0.04
MSH2-201ENST00000233146 TFRCP02786 760 aaKnown RBP14.79□□□□□ -0.04
MSH2-201ENST00000233146 PEX19P40855 299 aa14.79□□□□□ -0.04
MSH2-201ENST00000233146 TUBB8Q3ZCM7 444 aa14.79□□□□□ -0.04
MSH2-201ENST00000233146 ANKRD23Q86SG2 305 aa14.79□□□□□ -0.04
MSH2-201ENST00000233146 TRIM74Q86UV6 250 aa14.79□□□□□ -0.04
MSH2-201ENST00000233146 TRIM73Q86UV7 250 aa14.79□□□□□ -0.04
MSH2-201ENST00000233146 FTOQ9C0B1 505 aaKnown RBP eCLIP14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms