RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 FAM76AQ8TAV0 307 aa16.77■□□□□ 0.27
PTPRA-201ENST00000216877 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.77■□□□□ 0.27
PTPRA-201ENST00000216877 IGSF22Q8N9C0 903 aa16.77■□□□□ 0.27
PTPRA-201ENST00000216877 FSD1Q9BTV5 496 aa16.77■□□□□ 0.27
PTPRA-201ENST00000216877 MPHOSPH10O00566 681 aaKnown RBP16.76■□□□□ 0.27
PTPRA-201ENST00000216877 NDUFAB1O14561 156 aa16.76■□□□□ 0.27
PTPRA-201ENST00000216877 PPP1R12AO14974 1030 aaPredicted RBP16.76■□□□□ 0.27
PTPRA-201ENST00000216877 PSME1Q06323 249 aa16.76■□□□□ 0.27
PTPRA-201ENST00000216877 OTUD7BQ6GQQ9 843 aa16.76■□□□□ 0.27
PTPRA-201ENST00000216877 KIAA1468Q9P260 1216 aa16.76■□□□□ 0.27
PTPRA-201ENST00000216877 MAP2K7O14733 419 aa16.76■□□□□ 0.27
PTPRA-201ENST00000216877 LONRF3Q496Y0 759 aa16.76■□□□□ 0.27
PTPRA-201ENST00000216877 OLFM4Q6UX06 510 aa16.76■□□□□ 0.27
PTPRA-201ENST00000216877 RSRC2Q7L4I2 434 aaKnown RBP16.76■□□□□ 0.27
PTPRA-201ENST00000216877 CEP112Q8N8E3 955 aa16.76■□□□□ 0.27
PTPRA-201ENST00000216877 AMPHP49418 695 aa16.75■□□□□ 0.27
PTPRA-201ENST00000216877 NDUFA8P51970 172 aa16.75■□□□□ 0.27
PTPRA-201ENST00000216877 MTF1Q14872 753 aa16.75■□□□□ 0.27
PTPRA-201ENST00000216877 POTEB2H3BUK9 544 aa16.75■□□□□ 0.27
PTPRA-201ENST00000216877 GBP2P32456 591 aaPredicted RBP16.75■□□□□ 0.27
PTPRA-201ENST00000216877 GNGT1P63211 74 aa16.75■□□□□ 0.27
PTPRA-201ENST00000216877 CLASRPQ8N2M8 674 aaKnown RBP16.75■□□□□ 0.27
PTPRA-201ENST00000216877 XRN1Q8IZH2 1706 aaKnown RBP16.75■□□□□ 0.27
PTPRA-201ENST00000216877 CPS1P31327 1500 aa16.75■□□□□ 0.27
PTPRA-201ENST00000216877 DLC1Q96QB1 1528 aa16.75■□□□□ 0.27
PTPRA-201ENST00000216877 A0A1W2PP64 1363 aa16.75■□□□□ 0.27
PTPRA-201ENST00000216877 LRRIQ3A6PVS8 624 aaPredicted RBP16.75■□□□□ 0.27
PTPRA-201ENST00000216877 GCKP35557 465 aa16.75■□□□□ 0.27
PTPRA-201ENST00000216877 L1RE1Q9UN81 338 aa16.75■□□□□ 0.27
PTPRA-201ENST00000216877 GOLGA6CA6NDK9 693 aa16.74■□□□□ 0.27
PTPRA-201ENST00000216877 GOLGA6DP0CG33 693 aa16.74■□□□□ 0.27
PTPRA-201ENST00000216877 GOLGA6AQ9NYA3 693 aa16.74■□□□□ 0.27
PTPRA-201ENST00000216877 KIF20BQ96Q89 1820 aa16.74■□□□□ 0.27
PTPRA-201ENST00000216877 GOLGA6L9A6NEM1 432 aa16.74■□□□□ 0.27
PTPRA-201ENST00000216877 CUTAO60888 179 aa16.74■□□□□ 0.27
PTPRA-201ENST00000216877 TAF6LQ9Y6J9 622 aa16.74■□□□□ 0.27
PTPRA-201ENST00000216877 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.74■□□□□ 0.27
PTPRA-201ENST00000216877 MARCKSP29966 332 aaPredicted RBP16.74■□□□□ 0.27
PTPRA-201ENST00000216877 RESTQ13127 1097 aa16.74■□□□□ 0.27
PTPRA-201ENST00000216877 POTEDQ86YR6 584 aa16.74■□□□□ 0.27
PTPRA-201ENST00000216877 CAPZA3Q96KX2 299 aa16.74■□□□□ 0.27
PTPRA-201ENST00000216877 SEC62Q99442 399 aaKnown RBP16.74■□□□□ 0.27
PTPRA-201ENST00000216877 NALCNQ8IZF0 1738 aa16.74■□□□□ 0.27
PTPRA-201ENST00000216877 KCNV1Q6PIU1 500 aa16.73■□□□□ 0.27
PTPRA-201ENST00000216877 GSPT2Q8IYD1 628 aaKnown RBP16.73■□□□□ 0.27
PTPRA-201ENST00000216877 KAT14Q9H8E8 782 aa16.73■□□□□ 0.27
PTPRA-201ENST00000216877 ANKZF1Q9H8Y5 726 aa16.73■□□□□ 0.27
PTPRA-201ENST00000216877 STAP2Q9UGK3 403 aa16.73■□□□□ 0.27
PTPRA-201ENST00000216877 SYNE3Q6ZMZ3 975 aa16.73■□□□□ 0.27
PTPRA-201ENST00000216877 CAGE1Q8TC20 777 aa16.73■□□□□ 0.27
PTPRA-201ENST00000216877 COG3Q96JB2 828 aa16.73■□□□□ 0.27
PTPRA-201ENST00000216877 SLC27A2O14975 620 aa16.73■□□□□ 0.27
PTPRA-201ENST00000216877 GLRX3O76003 335 aaKnown RBP16.73■□□□□ 0.27
PTPRA-201ENST00000216877 CCDC175P0C221 793 aa16.73■□□□□ 0.27
PTPRA-201ENST00000216877 EIF2S2P20042 333 aaKnown RBP16.73■□□□□ 0.27
PTPRA-201ENST00000216877 GPATCH3Q96I76 525 aa16.73■□□□□ 0.27
PTPRA-201ENST00000216877 RUFY1Q96T51 708 aa16.73■□□□□ 0.27
PTPRA-201ENST00000216877 BOLA2Q9H3K6 86 aa16.73■□□□□ 0.27
PTPRA-201ENST00000216877 ZRANB1Q9UGI0 708 aa16.73■□□□□ 0.27
PTPRA-201ENST00000216877 CTAGE9A4FU28 777 aa16.72■□□□□ 0.27
PTPRA-201ENST00000216877 IRF6O14896 467 aa16.72■□□□□ 0.27
PTPRA-201ENST00000216877 STIM1Q13586 685 aa16.72■□□□□ 0.27
PTPRA-201ENST00000216877 CCDC148Q8NFR7 591 aa16.72■□□□□ 0.27
PTPRA-201ENST00000216877 NOC3LQ8WTT2 800 aaKnown RBP16.72■□□□□ 0.27
PTPRA-201ENST00000216877 NCOA5Q9HCD5 579 aaKnown RBP16.72■□□□□ 0.27
PTPRA-201ENST00000216877 WDR3Q9UNX4 943 aaKnown RBP eCLIP16.72■□□□□ 0.27
PTPRA-201ENST00000216877 Q6ZUG5 572 aa16.72■□□□□ 0.27
PTPRA-201ENST00000216877 TRIM6Q9C030 488 aaPredicted RBP16.72■□□□□ 0.27
PTPRA-201ENST00000216877 PCDHA7Q9UN72 937 aa16.72■□□□□ 0.27
PTPRA-201ENST00000216877 CCDC189A1A4V9 331 aa16.72■□□□□ 0.27
PTPRA-201ENST00000216877 NMIQ13287 307 aaPredicted RBP16.72■□□□□ 0.27
PTPRA-201ENST00000216877 RAB11FIP4Q86YS3 637 aa16.72■□□□□ 0.27
PTPRA-201ENST00000216877 MIEF2Q96C03 454 aa16.72■□□□□ 0.27
PTPRA-201ENST00000216877 CDC23Q9UJX2 597 aa16.72■□□□□ 0.27
PTPRA-201ENST00000216877 RPGRIP1LQ68CZ1 1315 aa16.72■□□□□ 0.27
PTPRA-201ENST00000216877 ATP1A2P50993 1020 aa16.71■□□□□ 0.27
PTPRA-201ENST00000216877 CEP85LQ5SZL2 805 aa16.71■□□□□ 0.27
PTPRA-201ENST00000216877 FLIIQ13045 1269 aa16.71■□□□□ 0.27
PTPRA-201ENST00000216877 MAP9Q49MG5 647 aa16.71■□□□□ 0.27
PTPRA-201ENST00000216877 NCAPH2Q6IBW4 605 aa16.71■□□□□ 0.27
PTPRA-201ENST00000216877 CDC5LQ99459 802 aaKnown RBP16.71■□□□□ 0.27
PTPRA-201ENST00000216877 CCDC8Q9H0W5 538 aaPredicted RBP16.71■□□□□ 0.27
PTPRA-201ENST00000216877 SOWAHDA6NJG2 315 aa16.7■□□□□ 0.26
PTPRA-201ENST00000216877 ZNF202O95125 648 aa16.7■□□□□ 0.26
PTPRA-201ENST00000216877 AACSQ86V21 672 aa16.7■□□□□ 0.26
PTPRA-201ENST00000216877 CAPS2Q9BXY5 557 aa16.7■□□□□ 0.26
PTPRA-201ENST00000216877 NSD2O96028 1365 aa16.7■□□□□ 0.26
PTPRA-201ENST00000216877 SLIT1O75093 1534 aa16.7■□□□□ 0.26
PTPRA-201ENST00000216877 SEMA3FQ13275 785 aa16.7■□□□□ 0.26
PTPRA-201ENST00000216877 PPFIBP1Q86W92 1011 aa16.7■□□□□ 0.26
PTPRA-201ENST00000216877 IQCA1Q86XH1 822 aa16.7■□□□□ 0.26
PTPRA-201ENST00000216877 MRPL44Q9H9J2 332 aaKnown RBP16.7■□□□□ 0.26
PTPRA-201ENST00000216877 CPSF2Q9P2I0 782 aaKnown RBP16.7■□□□□ 0.26
PTPRA-201ENST00000216877 A0A0U1RQJ8 604 aa16.7■□□□□ 0.26
PTPRA-201ENST00000216877 RPS6KB1P23443 525 aa16.7■□□□□ 0.26
PTPRA-201ENST00000216877 GGCXP38435 758 aa16.7■□□□□ 0.26
PTPRA-201ENST00000216877 NOA1Q8NC60 698 aaKnown RBP16.7■□□□□ 0.26
PTPRA-201ENST00000216877 PI4K2BQ8TCG2 481 aa16.7■□□□□ 0.26
PTPRA-201ENST00000216877 ATRIPQ8WXE1 791 aa16.7■□□□□ 0.26
PTPRA-201ENST00000216877 AATKQ6ZMQ8 1374 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms