RNA–Protein interactions for RNA: ENST00000639856.1

TRIM3-215, Transcript of tripartite motif containing 3, humanhuman

TSL 5 BASIC

Gene TRIM3, Length 2,137 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-215ENST00000639856 SIAH2O43255 324 aa12.49□□□□□ -0.41
TRIM3-215ENST00000639856 PROP1O75360 226 aa12.49□□□□□ -0.41
TRIM3-215ENST00000639856 OR13C7P0DN81 318 aa12.49□□□□□ -0.41
TRIM3-215ENST00000639856 EDDM3BP56851 147 aa12.49□□□□□ -0.41
TRIM3-215ENST00000639856 RAB2AP61019 212 aa12.49□□□□□ -0.41
TRIM3-215ENST00000639856 AKIRIN2Q53H80 203 aa12.49□□□□□ -0.41
TRIM3-215ENST00000639856 CA5BP1Q8WTZ4 195 aa12.49□□□□□ -0.41
TRIM3-215ENST00000639856 FAM222BQ8WU58 562 aa12.49□□□□□ -0.41
TRIM3-215ENST00000639856 OR4C12Q96R67 309 aa12.49□□□□□ -0.41
TRIM3-215ENST00000639856 WDR61Q9GZS3 305 aaKnown RBP12.49□□□□□ -0.41
TRIM3-215ENST00000639856 RPS10P5Q9NQ39 176 aa12.49□□□□□ -0.41
TRIM3-215ENST00000639856 OR6C3Q9NZP0 311 aa12.49□□□□□ -0.41
TRIM3-215ENST00000639856 CFAP46Q8IYW2 2715 aa12.48□□□□□ -0.41
TRIM3-215ENST00000639856 TANC2Q9HCD6 1990 aa12.48□□□□□ -0.41
TRIM3-215ENST00000639856 TRAV1-1A0A0B4J248 108 aa12.48□□□□□ -0.41
TRIM3-215ENST00000639856 MARCH11A6NNE9 402 aa12.48□□□□□ -0.41
TRIM3-215ENST00000639856 DUTP33316 252 aaKnown RBP12.48□□□□□ -0.41
TRIM3-215ENST00000639856 LOXL3P58215 753 aa12.48□□□□□ -0.41
TRIM3-215ENST00000639856 SERF2P84101 59 aa12.48□□□□□ -0.41
TRIM3-215ENST00000639856 SLC38A11Q08AI6 406 aa12.48□□□□□ -0.41
TRIM3-215ENST00000639856 NCR3LG1Q68D85 454 aa12.48□□□□□ -0.41
TRIM3-215ENST00000639856 DUX4L9Q6RFH8 374 aaPredicted RBP12.48□□□□□ -0.41
TRIM3-215ENST00000639856 ZNF561Q8N587 486 aa12.48□□□□□ -0.41
TRIM3-215ENST00000639856 DEFB108BQ8NET1 73 aa12.48□□□□□ -0.41
TRIM3-215ENST00000639856 FAM122AQ96E09 287 aa12.48□□□□□ -0.41
TRIM3-215ENST00000639856 C14orf79Q96F83 325 aa12.48□□□□□ -0.41
TRIM3-215ENST00000639856 NCOR1P1Q9H4R4 102 aa12.48□□□□□ -0.41
TRIM3-215ENST00000639856 RPRMQ9NS64 109 aa12.48□□□□□ -0.41
TRIM3-215ENST00000639856 DOCK11Q5JSL3 2073 aa12.48□□□□□ -0.41
TRIM3-215ENST00000639856 IGSF10Q6WRI0 2623 aa12.48□□□□□ -0.41
TRIM3-215ENST00000639856 C7orf77A4D0Y5 90 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 TSPAN9O75954 239 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 PAX6P26367 422 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 HAGHQ16775 308 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 SOHLH1Q5JUK2 328 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 OR8G2PQ6IF36 304 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 AIFM2Q9BRQ8 373 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 CLN8Q9UBY8 286 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 MLXQ9UH92 298 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 HCFC1P51610 2035 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 COLCA2A8K830 154 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 M0R036 132 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 CD3EP07766 207 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 SNRNP70P08621 437 aaKnown RBP12.47□□□□□ -0.41
TRIM3-215ENST00000639856 CGB3P0DN86 165 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 CGB7P0DN87 165 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 AKR1C3P42330 323 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 Q8TCH9 128 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 RXFP4Q8TDU9 374 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 DTD1Q8TEA8 209 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 CALYQ9NYX4 217 aa12.47□□□□□ -0.41
TRIM3-215ENST00000639856 TMEM8BA6NDV4 472 aa12.46□□□□□ -0.41
TRIM3-215ENST00000639856 ZG16O60844 167 aa12.46□□□□□ -0.41
TRIM3-215ENST00000639856 UQCRFS1P47985 274 aa12.46□□□□□ -0.41
TRIM3-215ENST00000639856 ZNF506Q5JVG8 444 aa12.46□□□□□ -0.41
TRIM3-215ENST00000639856 CLDND2Q8NHS1 167 aa12.46□□□□□ -0.41
TRIM3-215ENST00000639856 TAF15Q92804 592 aaKnown RBP eCLIP12.46□□□□□ -0.41
TRIM3-215ENST00000639856 ZDHHC16Q969W1 377 aa12.46□□□□□ -0.41
TRIM3-215ENST00000639856 R3HDM4Q96D70 268 aa12.46□□□□□ -0.41
TRIM3-215ENST00000639856 SDSLQ96GA7 329 aa12.46□□□□□ -0.41
TRIM3-215ENST00000639856 CIB3Q96Q77 187 aaPredicted RBP12.46□□□□□ -0.41
TRIM3-215ENST00000639856 UNKLQ9H9P5 680 aaKnown RBP12.46□□□□□ -0.41
TRIM3-215ENST00000639856 UBE2L5PA0A1B0GUS4 154 aa12.46□□□□□ -0.42
TRIM3-215ENST00000639856 RBMXL2O75526 392 aaKnown RBP12.46□□□□□ -0.42
TRIM3-215ENST00000639856 SCAF4O95104 1147 aaKnown RBP12.46□□□□□ -0.42
TRIM3-215ENST00000639856 HSPB1P04792 205 aaKnown RBP12.46□□□□□ -0.42
TRIM3-215ENST00000639856 CD55P08174 381 aa12.46□□□□□ -0.42
TRIM3-215ENST00000639856 SRP19P09132 144 aaKnown RBP12.46□□□□□ -0.42
TRIM3-215ENST00000639856 ZNF134P52741 427 aa12.46□□□□□ -0.42
TRIM3-215ENST00000639856 ICAM4Q14773 271 aa12.46□□□□□ -0.42
TRIM3-215ENST00000639856 RHEBQ15382 184 aa12.46□□□□□ -0.42
TRIM3-215ENST00000639856 ATP6V1FQ16864 119 aa12.46□□□□□ -0.42
TRIM3-215ENST00000639856 STUMQ69YW2 141 aa12.46□□□□□ -0.42
TRIM3-215ENST00000639856 C15orf54Q8N8G6 183 aa12.46□□□□□ -0.42
TRIM3-215ENST00000639856 CLCC1Q96S66 551 aa12.46□□□□□ -0.42
TRIM3-215ENST00000639856 C20orf24Q9BUV8 137 aa12.46□□□□□ -0.42
TRIM3-215ENST00000639856 VSIRQ9H7M9 311 aa12.46□□□□□ -0.42
TRIM3-215ENST00000639856 RAB9BQ9NP90 201 aa12.46□□□□□ -0.42
TRIM3-215ENST00000639856 LRBAP50851 2863 aa12.45□□□□□ -0.42
TRIM3-215ENST00000639856 PMS2P5A8MQ11 134 aa12.45□□□□□ -0.42
TRIM3-215ENST00000639856 FCGR3BO75015 233 aa12.45□□□□□ -0.42
TRIM3-215ENST00000639856 HPRT1P00492 218 aa12.45□□□□□ -0.42
TRIM3-215ENST00000639856 GYPAP02724 150 aa12.45□□□□□ -0.42
TRIM3-215ENST00000639856 C17orf58Q2M2W7 97 aa12.45□□□□□ -0.42
TRIM3-215ENST00000639856 MBD3L1Q8WWY6 194 aa12.45□□□□□ -0.42
TRIM3-215ENST00000639856 PINX1Q96BK5 328 aaKnown RBP12.45□□□□□ -0.42
TRIM3-215ENST00000639856 IFI27L2Q9H2X8 130 aa12.45□□□□□ -0.42
TRIM3-215ENST00000639856 TUBA4BQ9H853 241 aa12.45□□□□□ -0.42
TRIM3-215ENST00000639856 SAP30LQ9HAJ7 183 aa12.45□□□□□ -0.42
TRIM3-215ENST00000639856 USP24Q9UPU5 2620 aa12.45□□□□□ -0.42
TRIM3-215ENST00000639856 HRNRQ86YZ3 2850 aaPredicted RBP12.45□□□□□ -0.42
TRIM3-215ENST00000639856 M0R1X1 148 aa12.44□□□□□ -0.42
TRIM3-215ENST00000639856 ITGB1BP1O14713 200 aa12.44□□□□□ -0.42
TRIM3-215ENST00000639856 CRYBA1P05813 215 aa12.44□□□□□ -0.42
TRIM3-215ENST00000639856 TNFRSF1AP19438 455 aa12.44□□□□□ -0.42
TRIM3-215ENST00000639856 PLA2G5P39877 138 aa12.44□□□□□ -0.42
TRIM3-215ENST00000639856 TFF3Q07654 80 aa12.44□□□□□ -0.42
TRIM3-215ENST00000639856 ZNF726P1Q15940 193 aa12.44□□□□□ -0.42
TRIM3-215ENST00000639856 KHDC3LQ587J8 217 aa12.44□□□□□ -0.42
TRIM3-215ENST00000639856 AVPI1Q5T686 147 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms