RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SEMA5BQ9P283 1151 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 ZNF646O15015 1829 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-217ENST00000637988 LINC00862A6NCI5 91 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 KLK2P20151 261 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 CDKN2AP42771 156 aaKnown RBP5.29□□□□□ -1.56
SCN1A-217ENST00000637988 PIGYQ3MUY2 71 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 UQCC3Q6UW78 93 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 WDR34Q96EX3 536 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 LPAR5Q9H1C0 372 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 ZNF430Q9H8G1 570 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-217ENST00000637988 SOX21Q9Y651 276 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-217ENST00000637988 SDK2Q58EX2 2172 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 PCNX1Q96RV3 2341 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 C9orf170A2RU37 121 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 PLPP2O43688 288 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 CT62P0C5K7 136 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 P2RY1P47900 373 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 FGF8P55075 233 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-217ENST00000637988 DLK1P80370 383 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 MEF2CQ06413 473 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-217ENST00000637988 PNRC1Q12796 327 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-217ENST00000637988 HIST3H3Q16695 136 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 CHCHD2P9Q5T1J5 151 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-217ENST00000637988 ATG4DQ86TL0 474 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-217ENST00000637988 CLDND2Q8NHS1 167 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 KLF14Q8TD94 323 aaPredicted RBP5.29□□□□□ -1.56
SCN1A-217ENST00000637988 ARPC1AQ92747 370 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 NRIP2Q9BQI9 281 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 DSPPQ9NZW4 1301 aa5.29□□□□□ -1.56
SCN1A-217ENST00000637988 CACNA1EQ15878 2313 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 COX6A1P12074 109 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 DCTDP32321 178 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 FAAP20Q6NZ36 180 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 DPPA3Q6W0C5 159 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 DRAXINQ8NBI3 349 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-217ENST00000637988 SMIM4Q8WVI0 70 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 C12orf57Q99622 126 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 TLNRD1Q9H1K6 362 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 CACNA1IQ9P0X4 2223 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 ELOA3CA0A087WX78 387 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-217ENST00000637988 ODAMA1E959 279 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 SPINT1O43278 529 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 RPLP1P05386 114 aaKnown RBP5.28□□□□□ -1.56
SCN1A-217ENST00000637988 CLLU1Q5K131 121 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 LDLRAD3Q86YD5 345 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 SLC35B3Q9H1N7 401 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 ST6GALNAC2Q9UJ37 374 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 NLRC5Q86WI3 1866 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 CTAG2O75638 210 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 IGKV1D-33P01593 117 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 IGKV1-33P01594 117 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 BEND2Q8NDZ0 799 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 PCNX2A6NKB5 2137 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 THBDP07204 575 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 EVX1P49640 407 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 CLDN20P56880 219 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 FGF12P61328 243 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 CBLN3Q6UW01 205 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 TCF24Q7RTU0 167 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 MARVELD3Q96A59 401 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 CRIM1Q9NZV1 1036 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 WSB1Q9Y6I7 421 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 ALPK2Q86TB3 2170 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 TRAV9-2A0A087WT02 112 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.28□□□□□ -1.56
SCN1A-217ENST00000637988 DUSP14O95147 198 aaKnown RBP5.28□□□□□ -1.56
SCN1A-217ENST00000637988 OR10J1P30954 320 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 CGB2Q6NT52 195 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 TMEM70Q9BUB7 260 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 COL11A2P13942 1736 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-217ENST00000637988 C9JCJ5 164 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 RBM11P57052 281 aaKnown RBP5.28□□□□□ -1.56
SCN1A-217ENST00000637988 C2orf83Q53S99 150 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 TOMM20LQ6UXN7 152 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 ZNF600Q6ZNG1 722 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 SLC22A18ASQ8N1D0 253 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 SCMH1Q96GD3 660 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 SCARF2Q96GP6 870 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-217ENST00000637988 THSD7AQ9UPZ6 1657 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 TRAV20A0A0B4J274 112 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 LINC00869P0C866 280 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 JUNBP17275 347 aaPredicted RBP5.28□□□□□ -1.56
SCN1A-217ENST00000637988 SHISA4Q96DD7 197 aa5.28□□□□□ -1.56
SCN1A-217ENST00000637988 NGFRP08138 427 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 CDCP2Q5VXM1 449 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 OR5H6Q8NGV6 325 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 RNF166Q96A37 237 aaPredicted RBP5.27□□□□□ -1.57
SCN1A-217ENST00000637988 DYSFO75923 2080 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 TMEM250H0YL14 139 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 MOSP00540 346 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 RAE1P78406 368 aaKnown RBP5.27□□□□□ -1.57
SCN1A-217ENST00000637988 RAB32Q13637 225 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 ZIC1Q15915 447 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 TMEM54Q969K7 222 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 SIGLEC12Q96PQ1 595 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 C1QTNF4Q9BXJ3 329 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 HSF4Q9ULV5 492 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 PKIGQ9Y2B9 76 aa5.27□□□□□ -1.57
SCN1A-217ENST00000637988 EXOGQ9Y2C4 368 aaKnown RBP5.27□□□□□ -1.57
SCN1A-217ENST00000637988 TNS1Q9HBL0 1735 aaKnown RBP5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms