RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 DEDDO75618 318 aa12.41□□□□□ -0.42
CLN3-264ENST00000637985 SPDEFO95238 335 aa12.41□□□□□ -0.42
CLN3-264ENST00000637985 APOA2P02652 100 aa12.41□□□□□ -0.42
CLN3-264ENST00000637985 HSPB1P04792 205 aaKnown RBP12.41□□□□□ -0.42
CLN3-264ENST00000637985 HIST1H1DP16402 221 aaKnown RBP12.41□□□□□ -0.42
CLN3-264ENST00000637985 GNB3P16520 340 aa12.41□□□□□ -0.42
CLN3-264ENST00000637985 FGF9P31371 208 aaPredicted RBP12.41□□□□□ -0.42
CLN3-264ENST00000637985 NDPQ00604 133 aa12.41□□□□□ -0.42
CLN3-264ENST00000637985 ARL6IP1Q15041 203 aa12.41□□□□□ -0.42
CLN3-264ENST00000637985 C22orf42Q6IC83 251 aa12.41□□□□□ -0.42
CLN3-264ENST00000637985 ZNF562Q6V9R5 426 aa12.41□□□□□ -0.42
CLN3-264ENST00000637985 ZNF383Q8NA42 475 aa12.41□□□□□ -0.42
CLN3-264ENST00000637985 DRAXINQ8NBI3 349 aaPredicted RBP12.41□□□□□ -0.42
CLN3-264ENST00000637985 OR10J5Q8NHC4 309 aa12.41□□□□□ -0.42
CLN3-264ENST00000637985 FCGR1BQ92637 280 aa12.41□□□□□ -0.42
CLN3-264ENST00000637985 CABLES2Q9BTV7 478 aa12.41□□□□□ -0.42
CLN3-264ENST00000637985 METTL1Q9UBP6 276 aaKnown RBP12.41□□□□□ -0.42
CLN3-264ENST00000637985 FOXA2Q9Y261 457 aaPredicted RBP12.41□□□□□ -0.42
CLN3-264ENST00000637985 NUBP2Q9Y5Y2 271 aa12.41□□□□□ -0.42
CLN3-264ENST00000637985 TRBV6-7A0A0A0MS04 114 aa12.4□□□□□ -0.42
CLN3-264ENST00000637985 H0Y980 276 aa12.4□□□□□ -0.42
CLN3-264ENST00000637985 FCN1O00602 326 aa12.4□□□□□ -0.42
CLN3-264ENST00000637985 BET1O15155 118 aa12.4□□□□□ -0.42
CLN3-264ENST00000637985 IGKV1-16P04430 117 aa12.4□□□□□ -0.42
CLN3-264ENST00000637985 GSTT2P0CG29 244 aa12.4□□□□□ -0.42
CLN3-264ENST00000637985 GSTT2BP0CG30 244 aa12.4□□□□□ -0.42
CLN3-264ENST00000637985 EGR2P11161 476 aaPredicted RBP12.4□□□□□ -0.42
CLN3-264ENST00000637985 SNRPBP14678 240 aaKnown RBP12.4□□□□□ -0.42
CLN3-264ENST00000637985 RPS16P62249 146 aaKnown RBP12.4□□□□□ -0.42
CLN3-264ENST00000637985 PSG5Q15238 335 aa12.4□□□□□ -0.42
CLN3-264ENST00000637985 ECSCRQ19T08 205 aa12.4□□□□□ -0.42
CLN3-264ENST00000637985 AKIRIN2Q53H80 203 aa12.4□□□□□ -0.42
CLN3-264ENST00000637985 PYHIN1Q6K0P9 492 aa12.4□□□□□ -0.42
CLN3-264ENST00000637985 Q6ZS49 121 aa12.4□□□□□ -0.42
CLN3-264ENST00000637985 GTSCR1Q86UQ5 136 aa12.4□□□□□ -0.42
CLN3-264ENST00000637985 SPARTQ8N0X7 666 aa12.4□□□□□ -0.42
CLN3-264ENST00000637985 FBXO7Q9Y3I1 522 aa12.4□□□□□ -0.42
CLN3-264ENST00000637985 A0A1W2PN81 502 aa12.39□□□□□ -0.43
CLN3-264ENST00000637985 M0R1X1 148 aa12.39□□□□□ -0.43
CLN3-264ENST00000637985 ARPC1BO15143 372 aaKnown RBP12.39□□□□□ -0.43
CLN3-264ENST00000637985 SOX15O60248 233 aa12.39□□□□□ -0.43
CLN3-264ENST00000637985 PSMB9P28065 219 aa12.39□□□□□ -0.43
CLN3-264ENST00000637985 CHRNA7P36544 502 aa12.39□□□□□ -0.43
CLN3-264ENST00000637985 TALDO1P37837 337 aa12.39□□□□□ -0.43
CLN3-264ENST00000637985 TAGLNQ01995 201 aaKnown RBP12.39□□□□□ -0.43
CLN3-264ENST00000637985 IGSF11Q5DX21 431 aa12.39□□□□□ -0.43
CLN3-264ENST00000637985 PPP1R27Q86WC6 154 aa12.39□□□□□ -0.43
CLN3-264ENST00000637985 ABHD5Q8WTS1 349 aa12.39□□□□□ -0.43
CLN3-264ENST00000637985 TXNL4BQ9NX01 149 aaKnown RBP12.39□□□□□ -0.43
CLN3-264ENST00000637985 PKHD1P08F94 4074 aa12.39□□□□□ -0.43
CLN3-264ENST00000637985 A0A075B6Q4 140 aa12.38□□□□□ -0.43
CLN3-264ENST00000637985 A0A0B4J203 849 aa12.38□□□□□ -0.43
CLN3-264ENST00000637985 CXorf65A6NEN9 183 aa12.38□□□□□ -0.43
CLN3-264ENST00000637985 NUPR2A6NF83 97 aa12.38□□□□□ -0.43
CLN3-264ENST00000637985 NOTOA8MTQ0 251 aa12.38□□□□□ -0.43
CLN3-264ENST00000637985 CD40LGP29965 261 aa12.38□□□□□ -0.43
CLN3-264ENST00000637985 ARFRP1Q13795 201 aa12.38□□□□□ -0.43
CLN3-264ENST00000637985 ACTBL2Q562R1 376 aa12.38□□□□□ -0.43
CLN3-264ENST00000637985 TPRA1Q86W33 373 aa12.38□□□□□ -0.43
CLN3-264ENST00000637985 NR2C2APQ86WQ0 139 aa12.38□□□□□ -0.43
CLN3-264ENST00000637985 CLCC1Q96S66 551 aa12.38□□□□□ -0.43
CLN3-264ENST00000637985 ATG5Q9H1Y0 275 aa12.38□□□□□ -0.43
CLN3-264ENST00000637985 OR2D2Q9H210 308 aa12.38□□□□□ -0.43
CLN3-264ENST00000637985 SLC35D1Q9NTN3 355 aa12.38□□□□□ -0.43
CLN3-264ENST00000637985 SDHAF2Q9NX18 166 aa12.38□□□□□ -0.43
CLN3-264ENST00000637985 ZNF230Q9UIE0 474 aaPredicted RBP12.38□□□□□ -0.43
CLN3-264ENST00000637985 A3GALT2U3KPV4 340 aa12.38□□□□□ -0.43
CLN3-264ENST00000637985 CA2P00918 260 aa12.37□□□□□ -0.43
CLN3-264ENST00000637985 DTYMKP23919 212 aa12.37□□□□□ -0.43
CLN3-264ENST00000637985 LGALS7P47929 136 aa12.37□□□□□ -0.43
CLN3-264ENST00000637985 LINC00205P59089 165 aa12.37□□□□□ -0.43
CLN3-264ENST00000637985 CBX3Q13185 183 aa12.37□□□□□ -0.43
CLN3-264ENST00000637985 UNQ5815/PRO19632Q6UWF5 114 aa12.37□□□□□ -0.43
CLN3-264ENST00000637985 IL34Q6ZMJ4 242 aa12.37□□□□□ -0.43
CLN3-264ENST00000637985 CASTOR1Q8WTX7 329 aa12.37□□□□□ -0.43
CLN3-264ENST00000637985 MAFIPQ8WZ33 124 aa12.37□□□□□ -0.43
CLN3-264ENST00000637985 GINS4Q9BRT9 223 aa12.37□□□□□ -0.43
CLN3-264ENST00000637985 SSR3Q9UNL2 185 aa12.37□□□□□ -0.43
CLN3-264ENST00000637985 RBM7Q9Y580 266 aaKnown RBP12.37□□□□□ -0.43
CLN3-264ENST00000637985 SCGNO76038 276 aa12.36□□□□□ -0.43
CLN3-264ENST00000637985 IGHV3-11P01762 117 aa12.36□□□□□ -0.43
CLN3-264ENST00000637985 PMS2P11Q13670 270 aa12.36□□□□□ -0.43
CLN3-264ENST00000637985 CEMP1Q6PRD7 247 aaPredicted RBP12.36□□□□□ -0.43
CLN3-264ENST00000637985 LFNGQ8NES3 379 aa12.36□□□□□ -0.43
CLN3-264ENST00000637985 FAM103A1Q9BTL3 118 aaKnown RBP12.36□□□□□ -0.43
CLN3-264ENST00000637985 SLA2Q9H6Q3 261 aa12.36□□□□□ -0.43
CLN3-264ENST00000637985 PLEKHA3Q9HB20 300 aa12.36□□□□□ -0.43
CLN3-264ENST00000637985 MED14OSP0DP75 135 aa12.35□□□□□ -0.43
CLN3-264ENST00000637985 RRASP10301 218 aa12.35□□□□□ -0.43
CLN3-264ENST00000637985 FXYD3Q14802 87 aa12.35□□□□□ -0.43
CLN3-264ENST00000637985 RTL8BQ17RB0 113 aa12.35□□□□□ -0.43
CLN3-264ENST00000637985 CDNFQ49AH0 187 aa12.35□□□□□ -0.43
CLN3-264ENST00000637985 TMEM177Q53S58 311 aa12.35□□□□□ -0.43
CLN3-264ENST00000637985 HACD4Q5VWC8 232 aa12.35□□□□□ -0.43
CLN3-264ENST00000637985 LGALS9CQ6DKI2 356 aa12.35□□□□□ -0.43
CLN3-264ENST00000637985 ZNF773Q6PK81 442 aa12.35□□□□□ -0.43
CLN3-264ENST00000637985 H1FOOQ8IZA3 346 aaPredicted RBP12.35□□□□□ -0.43
CLN3-264ENST00000637985 ADTRPQ96IZ2 230 aa12.35□□□□□ -0.43
CLN3-264ENST00000637985 DCSTAMPQ9H295 470 aa12.35□□□□□ -0.43
CLN3-264ENST00000637985 SMIM30A4D0T7 59 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms