RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 IFI27L2Q9H2X8 130 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 RBKSQ9H477 322 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 SAP30LQ9HAJ7 183 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 NGBQ9NPG2 151 aa12.94□□□□□ -0.34
CLN3-251ENST00000636853 TRGV10A0A0A0MS01 117 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 KBTBD11-OT1A0A1B0GTJ5 212 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 M0R1X1 148 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 TMPRSS2O15393 492 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 TSPAN15O95858 294 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 S100A6P06703 90 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 CA7P43166 264 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 KLRB1Q12918 225 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 NCMAPQ5T1S8 102 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 ZFP82Q8N141 532 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 MALSU1Q96EH3 234 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 CLN8Q9UBY8 286 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 A0A1B0GV50 99 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 FCGR3BO75015 233 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 RAB5CP51148 216 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 C1orf229Q6ZS94 237 aaPredicted RBP12.93□□□□□ -0.34
CLN3-251ENST00000636853 H2BFWTQ7Z2G1 175 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 HAPLN4Q86UW8 402 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 TCTEX1D1Q8N7M0 179 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 LINC01560Q8TB33 94 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 NCOR1P1Q9H4R4 102 aa12.93□□□□□ -0.34
CLN3-251ENST00000636853 LRRC30A6NM36 301 aa12.92□□□□□ -0.34
CLN3-251ENST00000636853 C9JQL5 133 aa12.92□□□□□ -0.34
CLN3-251ENST00000636853 CCL21O00585 134 aa12.92□□□□□ -0.34
CLN3-251ENST00000636853 CCL17Q92583 94 aa12.92□□□□□ -0.34
CLN3-251ENST00000636853 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.92□□□□□ -0.34
CLN3-251ENST00000636853 GFOD1Q9NXC2 390 aa12.92□□□□□ -0.34
CLN3-251ENST00000636853 HSPB7Q9UBY9 170 aa12.92□□□□□ -0.34
CLN3-251ENST00000636853 STRAPQ9Y3F4 350 aaKnown RBP12.92□□□□□ -0.34
CLN3-251ENST00000636853 HCFC1P51610 2035 aa12.92□□□□□ -0.34
CLN3-251ENST00000636853 VSTM5A8MXK1 200 aa12.92□□□□□ -0.34
CLN3-251ENST00000636853 FAM90A26D6RGX4 464 aa12.92□□□□□ -0.34
CLN3-251ENST00000636853 IGHV2-5P01817 119 aa12.92□□□□□ -0.34
CLN3-251ENST00000636853 NDUFB7P17568 137 aa12.92□□□□□ -0.34
CLN3-251ENST00000636853 GRNP28799 593 aaKnown RBP12.92□□□□□ -0.34
CLN3-251ENST00000636853 CT45A1Q5HYN5 189 aa12.92□□□□□ -0.34
CLN3-251ENST00000636853 CT45A3Q8NHU0 189 aa12.92□□□□□ -0.34
CLN3-251ENST00000636853 RNASE6Q93091 150 aaKnown RBP12.92□□□□□ -0.34
CLN3-251ENST00000636853 MARCH11A6NNE9 402 aa12.91□□□□□ -0.34
CLN3-251ENST00000636853 RAB29O14966 203 aa12.91□□□□□ -0.34
CLN3-251ENST00000636853 RBMXL2O75526 392 aaKnown RBP12.91□□□□□ -0.34
CLN3-251ENST00000636853 MMP23AO75900 390 aa12.91□□□□□ -0.34
CLN3-251ENST00000636853 DFFBO76075 338 aa12.91□□□□□ -0.34
CLN3-251ENST00000636853 SNCAP37840 140 aa12.91□□□□□ -0.34
CLN3-251ENST00000636853 SPINK9Q5DT21 86 aa12.91□□□□□ -0.34
CLN3-251ENST00000636853 SLC25A24Q6NUK1 477 aa12.91□□□□□ -0.34
CLN3-251ENST00000636853 R3HDM4Q96D70 268 aa12.91□□□□□ -0.34
CLN3-251ENST00000636853 ATRXP46100 2492 aa12.91□□□□□ -0.34
CLN3-251ENST00000636853 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.91□□□□□ -0.34
CLN3-251ENST00000636853 PLAUP00749 431 aa12.91□□□□□ -0.34
CLN3-251ENST00000636853 TAS2R30P59541 319 aa12.91□□□□□ -0.34
CLN3-251ENST00000636853 SSX9Q7RTT3 188 aa12.91□□□□□ -0.34
CLN3-251ENST00000636853 ZDHHC16Q969W1 377 aa12.91□□□□□ -0.34
CLN3-251ENST00000636853 GNPNAT1Q96EK6 184 aaPredicted RBP12.91□□□□□ -0.34
CLN3-251ENST00000636853 DYNLRB1Q9NP97 96 aa12.91□□□□□ -0.34
CLN3-251ENST00000636853 LAMP3Q9UQV4 416 aa12.91□□□□□ -0.34
CLN3-251ENST00000636853 TRAV38-1A0A0B4J264 116 aa12.9□□□□□ -0.34
CLN3-251ENST00000636853 NKX6-3A6NJ46 265 aa12.9□□□□□ -0.34
CLN3-251ENST00000636853 TMEM178BH3BS89 294 aa12.9□□□□□ -0.34
CLN3-251ENST00000636853 C1QTNF9P0C862 333 aa12.9□□□□□ -0.34
CLN3-251ENST00000636853 MAS1LP35410 378 aa12.9□□□□□ -0.34
CLN3-251ENST00000636853 GNG10P50151 68 aa12.9□□□□□ -0.34
CLN3-251ENST00000636853 ERVFRD-1P60508 538 aa12.9□□□□□ -0.34
CLN3-251ENST00000636853 SLC16A13Q7RTY0 426 aa12.9□□□□□ -0.34
CLN3-251ENST00000636853 THNSL2Q86YJ6 484 aa12.9□□□□□ -0.34
CLN3-251ENST00000636853 ST6GALNAC3Q8NDV1 305 aa12.9□□□□□ -0.34
CLN3-251ENST00000636853 CD300LFQ8TDQ1 290 aa12.9□□□□□ -0.34
CLN3-251ENST00000636853 NIT2Q9NQR4 276 aa12.9□□□□□ -0.34
CLN3-251ENST00000636853 FBXO7Q9Y3I1 522 aa12.9□□□□□ -0.34
CLN3-251ENST00000636853 ARFGEF3Q5TH69 2177 aa12.9□□□□□ -0.34
CLN3-251ENST00000636853 PPIAL4EA0A075B759 164 aa12.9□□□□□ -0.35
CLN3-251ENST00000636853 PPIAL4DF5H284 164 aa12.9□□□□□ -0.35
CLN3-251ENST00000636853 ZG16O60844 167 aa12.9□□□□□ -0.35
CLN3-251ENST00000636853 IFNA5P01569 189 aa12.9□□□□□ -0.35
CLN3-251ENST00000636853 IGHV2-70P01814 119 aa12.9□□□□□ -0.35
CLN3-251ENST00000636853 PPIAL4FP0DN26 164 aa12.9□□□□□ -0.35
CLN3-251ENST00000636853 CDSNQ15517 529 aa12.9□□□□□ -0.35
CLN3-251ENST00000636853 PRAMEF5Q5TYX0 476 aa12.9□□□□□ -0.35
CLN3-251ENST00000636853 VKORC1L1Q8N0U8 176 aa12.9□□□□□ -0.35
CLN3-251ENST00000636853 ZNF525Q8N782 197 aa12.9□□□□□ -0.35
CLN3-251ENST00000636853 RBMXL1Q96E39 390 aaKnown RBP12.9□□□□□ -0.35
CLN3-251ENST00000636853 CLCC1Q96S66 551 aa12.9□□□□□ -0.35
CLN3-251ENST00000636853 RAB9BQ9NP90 201 aa12.9□□□□□ -0.35
CLN3-251ENST00000636853 IDI2-AS1Q9NZ38 188 aa12.9□□□□□ -0.35
CLN3-251ENST00000636853 SLC25A10Q9UBX3 287 aaPredicted RBP12.9□□□□□ -0.35
CLN3-251ENST00000636853 PPIAL4AQ9Y536 164 aa12.9□□□□□ -0.35
CLN3-251ENST00000636853 SAA2-SAA4A0A096LPE2 208 aa12.89□□□□□ -0.35
CLN3-251ENST00000636853 UMAD1C9J7I0 102 aa12.89□□□□□ -0.35
CLN3-251ENST00000636853 GPR37O15354 613 aa12.89□□□□□ -0.35
CLN3-251ENST00000636853 FCN3O75636 299 aa12.89□□□□□ -0.35
CLN3-251ENST00000636853 CD3EP07766 207 aa12.89□□□□□ -0.35
CLN3-251ENST00000636853 OR9G9P0C7N8 305 aa12.89□□□□□ -0.35
CLN3-251ENST00000636853 SAA2P0DJI9 122 aaPredicted RBP12.89□□□□□ -0.35
CLN3-251ENST00000636853 OR2B8PP59922 312 aa12.89□□□□□ -0.35
CLN3-251ENST00000636853 OR8G2PQ6IF36 304 aa12.89□□□□□ -0.35
CLN3-251ENST00000636853 RBMS3Q6XE24 437 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms