RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 TP53BP1Q12888 1972 aaPredicted RBP11.78□□□□□ -0.52
CIITA-213ENST00000618327 HPRT1P00492 218 aa11.78□□□□□ -0.52
CIITA-213ENST00000618327 WDR73Q6P4I2 378 aa11.78□□□□□ -0.52
CIITA-213ENST00000618327 RNASE6Q93091 150 aaKnown RBP11.78□□□□□ -0.52
CIITA-213ENST00000618327 OR10C1Q96KK4 312 aa11.78□□□□□ -0.52
CIITA-213ENST00000618327 GPHA2Q96T91 129 aa11.78□□□□□ -0.52
CIITA-213ENST00000618327 WDR61Q9GZS3 305 aaKnown RBP11.78□□□□□ -0.52
CIITA-213ENST00000618327 GSX1Q9H4S2 264 aaPredicted RBP11.78□□□□□ -0.52
CIITA-213ENST00000618327 PAQR4Q8N4S7 273 aaPredicted RBP11.78□□□□□ -0.52
CIITA-213ENST00000618327 IL36RNQ9UBH0 155 aa11.78□□□□□ -0.52
CIITA-213ENST00000618327 SLC45A2Q9UMX9 530 aa11.78□□□□□ -0.52
CIITA-213ENST00000618327 FAM157AC9JC47 383 aa11.78□□□□□ -0.52
CIITA-213ENST00000618327 COX6B1P14854 86 aa11.78□□□□□ -0.52
CIITA-213ENST00000618327 FGF8P55075 233 aaPredicted RBP11.78□□□□□ -0.52
CIITA-213ENST00000618327 UCP3P55916 312 aa11.78□□□□□ -0.52
CIITA-213ENST00000618327 ERVFRD-1P60508 538 aa11.78□□□□□ -0.52
CIITA-213ENST00000618327 EWSR1Q01844 656 aaKnown RBP eCLIP11.78□□□□□ -0.52
CIITA-213ENST00000618327 DHRS11Q6UWP2 260 aa11.78□□□□□ -0.52
CIITA-213ENST00000618327 OR10G4Q8NGN3 311 aa11.78□□□□□ -0.52
CIITA-213ENST00000618327 OR10G9Q8NGN4 311 aa11.78□□□□□ -0.52
CIITA-213ENST00000618327 OR10G7Q8NGN6 311 aa11.78□□□□□ -0.52
CIITA-213ENST00000618327 OR2T6Q8NHC8 308 aa11.78□□□□□ -0.52
CIITA-213ENST00000618327 NAT8Q9UHE5 227 aa11.78□□□□□ -0.52
CIITA-213ENST00000618327 GATCO43716 136 aaKnown RBP11.77□□□□□ -0.52
CIITA-213ENST00000618327 ACAA1P09110 424 aaPredicted RBP11.77□□□□□ -0.52
CIITA-213ENST00000618327 CAMPP49913 170 aa11.77□□□□□ -0.52
CIITA-213ENST00000618327 ZNF383Q8NA42 475 aa11.77□□□□□ -0.52
CIITA-213ENST00000618327 LRP11Q86VZ4 500 aa11.77□□□□□ -0.53
CIITA-213ENST00000618327 IDI2-AS1Q9NZ38 188 aa11.77□□□□□ -0.53
CIITA-213ENST00000618327 JPT1Q9UK76 154 aa11.77□□□□□ -0.53
CIITA-213ENST00000618327 B4DEV8 164 aa11.77□□□□□ -0.53
CIITA-213ENST00000618327 HTR1DP28221 377 aa11.77□□□□□ -0.53
CIITA-213ENST00000618327 SSTR5P35346 364 aa11.77□□□□□ -0.53
CIITA-213ENST00000618327 B2MP61769 119 aa11.77□□□□□ -0.53
CIITA-213ENST00000618327 ZNF345Q14585 488 aa11.77□□□□□ -0.53
CIITA-213ENST00000618327 KHDC1LQ5JSQ8 128 aa11.77□□□□□ -0.53
CIITA-213ENST00000618327 TMEM65Q6PI78 240 aa11.77□□□□□ -0.53
CIITA-213ENST00000618327 FOXL2NBQ6ZUU3 175 aa11.77□□□□□ -0.53
CIITA-213ENST00000618327 ATP5SQ99766 215 aa11.77□□□□□ -0.53
CIITA-213ENST00000618327 PCGF1Q9BSM1 259 aa11.77□□□□□ -0.53
CIITA-213ENST00000618327 SEBOXQ9HB31 216 aaPredicted RBP11.77□□□□□ -0.53
CIITA-213ENST00000618327 SH2D2AQ9NP31 389 aa11.77□□□□□ -0.53
CIITA-213ENST00000618327 S100A4P26447 101 aaKnown RBP11.77□□□□□ -0.53
CIITA-213ENST00000618327 FAM201AQ5SY85 155 aa11.77□□□□□ -0.53
CIITA-213ENST00000618327 CLEC2AQ6UVW9 174 aa11.77□□□□□ -0.53
CIITA-213ENST00000618327 TMEM106BQ9NUM4 274 aa11.77□□□□□ -0.53
CIITA-213ENST00000618327 INTS1Q8N201 2190 aaKnown RBP11.76□□□□□ -0.53
CIITA-213ENST00000618327 MBD3L4A6NDZ8 208 aaPredicted RBP11.76□□□□□ -0.53
CIITA-213ENST00000618327 MBD3L3A6NE82 208 aaPredicted RBP11.76□□□□□ -0.53
CIITA-213ENST00000618327 MBD3L5A6NJ08 208 aaPredicted RBP11.76□□□□□ -0.53
CIITA-213ENST00000618327 PGA5P0DJD9 388 aa11.76□□□□□ -0.53
CIITA-213ENST00000618327 RHOBP62745 196 aa11.76□□□□□ -0.53
CIITA-213ENST00000618327 ELOBQ15370 118 aa11.76□□□□□ -0.53
CIITA-213ENST00000618327 DOLPP1Q86YN1 238 aa11.76□□□□□ -0.53
CIITA-213ENST00000618327 MBD3L2Q8NHZ7 208 aaPredicted RBP11.76□□□□□ -0.53
CIITA-213ENST00000618327 TMEM191AQ9H0A3 160 aa11.76□□□□□ -0.53
CIITA-213ENST00000618327 PKDREJQ9NTG1 2253 aa11.76□□□□□ -0.53
CIITA-213ENST00000618327 LOC102724200A0A096LPH7 203 aaPredicted RBP11.76□□□□□ -0.53
CIITA-213ENST00000618327 C5orf63A6NC05 138 aa11.76□□□□□ -0.53
CIITA-213ENST00000618327 HLA-GP17693 338 aa11.76□□□□□ -0.53
CIITA-213ENST00000618327 PKIAP61925 76 aa11.76□□□□□ -0.53
CIITA-213ENST00000618327 DPPA3Q6W0C5 159 aa11.76□□□□□ -0.53
CIITA-213ENST00000618327 ZNF818PQ6ZRF7 136 aa11.76□□□□□ -0.53
CIITA-213ENST00000618327 RCC2Q9P258 522 aaKnown RBP11.76□□□□□ -0.53
CIITA-213ENST00000618327 H2BFSP57053 126 aa11.76□□□□□ -0.53
CIITA-213ENST00000618327 FAM89BQ8N5H3 189 aa11.76□□□□□ -0.53
CIITA-213ENST00000618327 PITPNC1Q9UKF7 332 aa11.76□□□□□ -0.53
CIITA-213ENST00000618327 ZNF729A6NN14 1252 aaPredicted RBP11.75□□□□□ -0.53
CIITA-213ENST00000618327 DLK1P80370 383 aa11.75□□□□□ -0.53
CIITA-213ENST00000618327 OR10G8Q8NGN5 311 aa11.75□□□□□ -0.53
CIITA-213ENST00000618327 OR1L4Q8NGR5 311 aa11.75□□□□□ -0.53
CIITA-213ENST00000618327 SRD5A3Q9H8P0 318 aa11.75□□□□□ -0.53
CIITA-213ENST00000618327 ABCA1O95477 2261 aa11.75□□□□□ -0.53
CIITA-213ENST00000618327 CUL9Q8IWT3 2517 aa11.75□□□□□ -0.53
CIITA-213ENST00000618327 C17orf100A8MU93 164 aa11.75□□□□□ -0.53
CIITA-213ENST00000618327 RBP4P02753 201 aa11.75□□□□□ -0.53
CIITA-213ENST00000618327 OTX1P32242 354 aaPredicted RBP11.75□□□□□ -0.53
CIITA-213ENST00000618327 CD81P60033 236 aa11.75□□□□□ -0.53
CIITA-213ENST00000618327 COX19Q49B96 90 aa11.75□□□□□ -0.53
CIITA-213ENST00000618327 UNQ6494/PRO21346Q6UXR6 183 aa11.75□□□□□ -0.53
CIITA-213ENST00000618327 MRPL37Q9BZE1 423 aaKnown RBP11.75□□□□□ -0.53
CIITA-213ENST00000618327 SIRT7Q9NRC8 400 aa11.75□□□□□ -0.53
CIITA-213ENST00000618327 C1RLQ9NZP8 487 aa11.75□□□□□ -0.53
CIITA-213ENST00000618327 HEATR1Q9H583 2144 aaKnown RBP11.75□□□□□ -0.53
CIITA-213ENST00000618327 ZNF880Q6PDB4 577 aa11.75□□□□□ -0.53
CIITA-213ENST00000618327 K7ENP7 123 aa11.75□□□□□ -0.53
CIITA-213ENST00000618327 F2RL2O00254 374 aa11.75□□□□□ -0.53
CIITA-213ENST00000618327 RHOVQ96L33 236 aa11.75□□□□□ -0.53
CIITA-213ENST00000618327 OR5AC2Q9NZP5 309 aa11.75□□□□□ -0.53
CIITA-213ENST00000618327 C12orf77C9JDV5 145 aa11.74□□□□□ -0.53
CIITA-213ENST00000618327 CXCL2P19875 107 aa11.74□□□□□ -0.53
CIITA-213ENST00000618327 RPEL1Q2QD12 228 aa11.74□□□□□ -0.53
CIITA-213ENST00000618327 OR5AU1Q8NGC0 362 aa11.74□□□□□ -0.53
CIITA-213ENST00000618327 LEAP2Q969E1 77 aa11.74□□□□□ -0.53
CIITA-213ENST00000618327 AAMDCQ9H7C9 122 aa11.74□□□□□ -0.53
CIITA-213ENST00000618327 KCNAB3O43448 404 aa11.74□□□□□ -0.53
CIITA-213ENST00000618327 SLC25A5P05141 298 aaKnown RBP11.74□□□□□ -0.53
CIITA-213ENST00000618327 SULT1A2P50226 295 aa11.74□□□□□ -0.53
CIITA-213ENST00000618327 CCDC144NLQ6NUI1 221 aa11.74□□□□□ -0.53
CIITA-213ENST00000618327 PET117Q6UWS5 81 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms