RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 DVL1P1P54792 670 aaPredicted RBP11.57□□□□□ -0.56
USP39-220ENST00000613444 TBX15Q96SF7 602 aa11.57□□□□□ -0.56
USP39-220ENST00000613444 NABP2Q9BQ15 211 aa11.57□□□□□ -0.56
USP39-220ENST00000613444 COMMD9Q9P000 198 aa11.57□□□□□ -0.56
USP39-220ENST00000613444 BOLA1Q9Y3E2 137 aa11.57□□□□□ -0.56
USP39-220ENST00000613444 INSIG2Q9Y5U4 225 aa11.57□□□□□ -0.56
USP39-220ENST00000613444 ZANQ9Y493 2812 aa11.56□□□□□ -0.56
USP39-220ENST00000613444 A0A1B0GU03 582 aa11.56□□□□□ -0.56
USP39-220ENST00000613444 HMSDA8MTL9 139 aa11.56□□□□□ -0.56
USP39-220ENST00000613444 RNASEK-C17orf49H0YIS7 233 aa11.56□□□□□ -0.56
USP39-220ENST00000613444 KRASP01116 189 aa11.56□□□□□ -0.56
USP39-220ENST00000613444 HOXB4P17483 251 aaPredicted RBP11.56□□□□□ -0.56
USP39-220ENST00000613444 AKR1C2P52895 323 aa11.56□□□□□ -0.56
USP39-220ENST00000613444 LGALSLQ3ZCW2 172 aaPredicted RBP11.56□□□□□ -0.56
USP39-220ENST00000613444 C1orf159Q96HA4 380 aa11.56□□□□□ -0.56
USP39-220ENST00000613444 PLSCR3Q9NRY6 295 aa11.56□□□□□ -0.56
USP39-220ENST00000613444 MMP24Q9Y5R2 645 aa11.56□□□□□ -0.56
USP39-220ENST00000613444 HECTD1Q9ULT8 2610 aa11.56□□□□□ -0.56
USP39-220ENST00000613444 TET2Q6N021 2002 aaPredicted RBP11.56□□□□□ -0.56
USP39-220ENST00000613444 H0YJW9 148 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 IGKV1-16P04430 117 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 PAX8Q06710 450 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 TMEM65Q6PI78 240 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 OR4S2Q8NH73 311 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 SPIN2AQ99865 258 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 SPIN2BQ9BPZ2 258 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 HEXA-AS1Q9H8Q6 139 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 OR5AC2Q9NZP5 309 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 MBD2Q9UBB5 411 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 PRRC2AP48634 2157 aaKnown RBP11.55□□□□□ -0.56
USP39-220ENST00000613444 TNCP24821 2201 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 FXYD6-FXYD2A0A087WZ82 144 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 MARCH11A6NNE9 402 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 CXCL2P19875 107 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 IL3RAP26951 378 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 MIDNQ504T8 468 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 TGIF2LXQ8IUE1 241 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 R3HDM4Q96D70 268 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 RRNAD1Q96FB5 475 aaKnown RBP11.55□□□□□ -0.56
USP39-220ENST00000613444 CACNG5Q9UF02 275 aa11.55□□□□□ -0.56
USP39-220ENST00000613444 K7EPK0 472 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 TOX4O94842 621 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 CRYZL1O95825 349 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 ARG1P05089 322 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 EPHA1P21709 976 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 ID3Q02535 119 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 SMCO1Q147U7 214 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 CXorf66Q5JRM2 361 aaPredicted RBP11.54□□□□□ -0.56
USP39-220ENST00000613444 Q5PR19 223 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 PRSS54Q6PEW0 395 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 FAM71E2Q8N5Q1 922 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 PCGF1Q9BSM1 259 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 SLC35D1Q9NTN3 355 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 AKAP9Q99996 3911 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 ARPC5O15511 151 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 DEDDO75618 318 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 PRSS57Q6UWY2 283 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 VKORC1L1Q8N0U8 176 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 OR1S1Q8NH92 325 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 THAP6Q8TBB0 222 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 C11orf1Q9H5F2 150 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 COA4Q9NYJ1 87 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 TNFSF18Q9UNG2 199 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 RCL1Q9Y2P8 373 aaKnown RBP11.54□□□□□ -0.56
USP39-220ENST00000613444 AMMECR1Q9Y4X0 333 aaPredicted RBP11.54□□□□□ -0.56
USP39-220ENST00000613444 HSPB11Q9Y547 144 aa11.54□□□□□ -0.56
USP39-220ENST00000613444 ATG12O94817 140 aa11.53□□□□□ -0.56
USP39-220ENST00000613444 MSMBP08118 114 aa11.53□□□□□ -0.56
USP39-220ENST00000613444 NQO2P16083 231 aa11.53□□□□□ -0.56
USP39-220ENST00000613444 S100A10P60903 97 aa11.53□□□□□ -0.56
USP39-220ENST00000613444 TAGLNQ01995 201 aaKnown RBP11.53□□□□□ -0.56
USP39-220ENST00000613444 POU2AF1Q16633 256 aa11.53□□□□□ -0.56
USP39-220ENST00000613444 THOC7Q6I9Y2 204 aaKnown RBP11.53□□□□□ -0.56
USP39-220ENST00000613444 DHRS7BQ6IAN0 325 aaPredicted RBP11.53□□□□□ -0.56
USP39-220ENST00000613444 ZNF546Q86UE3 836 aa11.53□□□□□ -0.56
USP39-220ENST00000613444 PDZD9Q8IXQ8 264 aa11.53□□□□□ -0.56
USP39-220ENST00000613444 RNASE11Q8TAA1 199 aaKnown RBP11.53□□□□□ -0.56
USP39-220ENST00000613444 POMT1Q9Y6A1 747 aa11.53□□□□□ -0.56
USP39-220ENST00000613444 ZFHX3Q15911 3703 aa11.53□□□□□ -0.56
USP39-220ENST00000613444 IGHV1-3A0A0C4DH29 117 aa11.52□□□□□ -0.56
USP39-220ENST00000613444 RNF222A6NCQ9 220 aa11.52□□□□□ -0.56
USP39-220ENST00000613444 SRRM4A7MD48 611 aaKnown RBP11.52□□□□□ -0.56
USP39-220ENST00000613444 KCNAB3O43448 404 aa11.52□□□□□ -0.56
USP39-220ENST00000613444 SCGB1D2O95969 90 aa11.52□□□□□ -0.56
USP39-220ENST00000613444 HTR1DP28221 377 aa11.52□□□□□ -0.56
USP39-220ENST00000613444 NKX2-1P43699 371 aaPredicted RBP11.52□□□□□ -0.56
USP39-220ENST00000613444 LOXL1Q08397 574 aaPredicted RBP11.52□□□□□ -0.56
USP39-220ENST00000613444 RTL8BQ17RB0 113 aa11.52□□□□□ -0.56
USP39-220ENST00000613444 LHFPL4Q7Z7J7 247 aa11.52□□□□□ -0.56
USP39-220ENST00000613444 FOXRED2Q8IWF2 684 aa11.52□□□□□ -0.56
USP39-220ENST00000613444 DMBX1Q8NFW5 382 aa11.52□□□□□ -0.56
USP39-220ENST00000613444 DPM3Q9P2X0 92 aa11.52□□□□□ -0.56
USP39-220ENST00000613444 A0A1W2PPI3 338 aa11.52□□□□□ -0.57
USP39-220ENST00000613444 ST8SIA3O43173 380 aa11.52□□□□□ -0.57
USP39-220ENST00000613444 GAPDHP04406 335 aaKnown RBP11.52□□□□□ -0.57
USP39-220ENST00000613444 IL6RP08887 468 aaPredicted RBP11.52□□□□□ -0.57
USP39-220ENST00000613444 OR9G9P0C7N8 305 aa11.52□□□□□ -0.57
USP39-220ENST00000613444 RRASP10301 218 aa11.52□□□□□ -0.57
USP39-220ENST00000613444 TMEM177Q53S58 311 aa11.52□□□□□ -0.57
USP39-220ENST00000613444 TPTE2P1Q5T6R2 138 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms