RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 RFLNAQ6ZTI6 216 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 EAF1Q96JC9 268 aaPredicted RBP4.3□□□□□ -1.72
VPS13D-213ENST00000613099 MDC1Q14676 2089 aaKnown RBP4.3□□□□□ -1.72
VPS13D-213ENST00000613099 IGHV2-26A0A0B4J1V2 119 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 MUC21A0A0G2JKD1 596 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 MUC21A0A140T8X8 626 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 K7N7A8 449 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 SH2D1BO14796 132 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 PPP1CAP62136 330 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 RUNX1Q01196 453 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 MUC21Q5SSG8 566 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 TBC1D26Q86UD7 250 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 PIGCQ92535 297 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 TMEM101Q96IK0 257 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 PGLYRP3Q96LB9 341 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 TRAV8-7A0A075B6U6 113 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 AREGP15514 252 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 HBBP68871 147 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 RAB1CQ92928 201 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 FNDC1Q4ZHG4 1894 aaPredicted RBP4.3□□□□□ -1.72
VPS13D-213ENST00000613099 NAV3Q8IVL0 2385 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 IL3RAP26951 378 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 KLRB1Q12918 225 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 MEIG1Q5JSS6 88 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 HIF1ANQ9NWT6 349 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 GTF3C1Q12789 2109 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 H0YIG0 161 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 PLPP3O14495 311 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 HCFC1R1Q9NWW0 138 aa4.3□□□□□ -1.72
VPS13D-213ENST00000613099 TRBV7-9A0A0J9YWB2 115 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 CSN3P07498 182 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 RPS15P62841 145 aaKnown RBP4.29□□□□□ -1.72
VPS13D-213ENST00000613099 IZUMO4Q1ZYL8 232 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 KLF12Q9Y4X4 402 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 IZUMO1RA6ND01 250 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 FOXH1O75593 365 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 PDPNQ86YL7 162 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 LINC00346Q8IVM7 164 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 OSR2Q8N2R0 312 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 TIMD4Q96H15 378 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 CD160O95971 181 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 PTGER1P34995 402 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 EFNB2P52799 333 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 DCAF12Q5T6F0 453 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 TOMM40O96008 361 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 NBEAP1P0C6P0 100 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 C1orf122Q6ZSJ8 110 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 MARCH3Q86UD3 253 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 STARD5Q9NSY2 213 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 MCTS1Q9ULC4 181 aaKnown RBP4.29□□□□□ -1.72
VPS13D-213ENST00000613099 COA3Q9Y2R0 106 aaPredicted RBP4.29□□□□□ -1.72
VPS13D-213ENST00000613099 H3BP45 60 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 DLX1P56177 255 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 ZNF542PQ5EBM4 170 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 OR1L4Q8NGR5 311 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 FAM222BQ8WU58 562 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 C1QTNF4Q9BXJ3 329 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 NEUROG3Q9Y4Z2 214 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 IGKV6-21A0A0C4DH24 114 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 PDCD6O75340 191 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 KISS1Q15726 138 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 OTPQ5XKR4 325 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 OR10J6PQ8NGY7 276 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 TAF15Q92804 592 aaKnown RBP eCLIP4.29□□□□□ -1.72
VPS13D-213ENST00000613099 TMEM140Q9NV12 185 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 PLPP1O14494 284 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 ATP5LO75964 103 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 TGFAP01135 160 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 ELNP15502 786 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 B4GALNT1Q00973 533 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 POU3F1Q03052 451 aaPredicted RBP4.29□□□□□ -1.72
VPS13D-213ENST00000613099 ST6GALNAC6Q969X2 333 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 GALMQ96C23 342 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 RAB1BQ9H0U4 201 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 CADP27708 2225 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 A0A0G2JK05 382 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 ATXN7O15265 892 aaPredicted RBP4.29□□□□□ -1.72
VPS13D-213ENST00000613099 EDDM3AQ14507 147 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 LINC00596Q86U02 117 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 TICRRQ7Z2Z1 1910 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 ZNF840PA6NDX5 716 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 RPL36A-HNRNPH2H7BZ11 118 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 RPS4XP62701 263 aaKnown RBP4.29□□□□□ -1.72
VPS13D-213ENST00000613099 HEATR5BQ9P2D3 2071 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 SMPXQ9UHP9 88 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 KIAA2026Q5HYC2 2103 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 TRBV20-1A0A075B6N2 111 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 PDLIM4P50479 330 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 HERV-K104P63124 156 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 LRRC75AQ8NAA5 344 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 FAM90A26D6RGX4 464 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 M0QZQ0 153 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 Q6ZWC4 215 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 TCF24Q7RTU0 167 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 RPRMQ9NS64 109 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 LRP12Q9Y561 859 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 CCL2P13500 99 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 EXOSC7Q15024 291 aaKnown RBP4.29□□□□□ -1.72
VPS13D-213ENST00000613099 ZNF260Q3ZCT1 412 aa4.29□□□□□ -1.72
VPS13D-213ENST00000613099 ZADH2Q8N4Q0 377 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms