RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 TPBGQ13641 420 aa9.01□□□□□ -0.97
LIG3-209ENST00000586435 RTL8BQ17RB0 113 aa9.01□□□□□ -0.97
LIG3-209ENST00000586435 LINC00322Q6ZN03 302 aaPredicted RBP9.01□□□□□ -0.97
LIG3-209ENST00000586435 TEX45Q8NA69 505 aa9.01□□□□□ -0.97
LIG3-209ENST00000586435 IL17DQ8TAD2 202 aa9.01□□□□□ -0.97
LIG3-209ENST00000586435 DDB2Q92466 427 aa9.01□□□□□ -0.97
LIG3-209ENST00000586435 SNAPC3Q92966 411 aa9.01□□□□□ -0.97
LIG3-209ENST00000586435 FAM3DQ96BQ1 224 aa9.01□□□□□ -0.97
LIG3-209ENST00000586435 C5orf30Q96GV9 206 aa9.01□□□□□ -0.97
LIG3-209ENST00000586435 TUBA4BQ9H853 241 aa9.01□□□□□ -0.97
LIG3-209ENST00000586435 COA4Q9NYJ1 87 aa9.01□□□□□ -0.97
LIG3-209ENST00000586435 NKX1-2Q9UD57 310 aaPredicted RBP9.01□□□□□ -0.97
LIG3-209ENST00000586435 ADAM30Q9UKF2 790 aa9.01□□□□□ -0.97
LIG3-209ENST00000586435 AK6Q9Y3D8 172 aaKnown RBP9.01□□□□□ -0.97
LIG3-209ENST00000586435 A0A0B4J203 849 aa9□□□□□ -0.97
LIG3-209ENST00000586435 FAM223BA6NKX1 122 aa9□□□□□ -0.97
LIG3-209ENST00000586435 PTGES3LE9PB15 166 aa9□□□□□ -0.97
LIG3-209ENST00000586435 DENRO43583 198 aaKnown RBP9□□□□□ -0.97
LIG3-209ENST00000586435 RBMXL2O75526 392 aaKnown RBP9□□□□□ -0.97
LIG3-209ENST00000586435 FCGR3AP08637 254 aa9□□□□□ -0.97
LIG3-209ENST00000586435 CD3GP09693 182 aa9□□□□□ -0.97
LIG3-209ENST00000586435 UBE2KP61086 200 aa9□□□□□ -0.97
LIG3-209ENST00000586435 MRPS15P82914 257 aaKnown RBP9□□□□□ -0.97
LIG3-209ENST00000586435 DEFA5Q01523 94 aa9□□□□□ -0.97
LIG3-209ENST00000586435 PRSS8Q16651 343 aa9□□□□□ -0.97
LIG3-209ENST00000586435 VMA21Q3ZAQ7 101 aa9□□□□□ -0.97
LIG3-209ENST00000586435 IGSF11Q5DX21 431 aa9□□□□□ -0.97
LIG3-209ENST00000586435 FAM223AQ8IWN6 122 aa9□□□□□ -0.97
LIG3-209ENST00000586435 OR10J5Q8NHC4 309 aa9□□□□□ -0.97
LIG3-209ENST00000586435 TMEM203Q969S6 136 aa9□□□□□ -0.97
LIG3-209ENST00000586435 ADTRPQ96IZ2 230 aa9□□□□□ -0.97
LIG3-209ENST00000586435 PHB2Q99623 299 aa9□□□□□ -0.97
LIG3-209ENST00000586435 CENPOQ9BU64 300 aa9□□□□□ -0.97
LIG3-209ENST00000586435 VCXQ9H320 206 aa9□□□□□ -0.97
LIG3-209ENST00000586435 SCN3BQ9NY72 215 aa9□□□□□ -0.97
LIG3-209ENST00000586435 KCNK7Q9Y2U2 307 aa9□□□□□ -0.97
LIG3-209ENST00000586435 CEPT1Q9Y6K0 416 aa9□□□□□ -0.97
LIG3-209ENST00000586435 TRBV9A0A0B4J1U6 114 aa8.99□□□□□ -0.97
LIG3-209ENST00000586435 IZUMO1RA6ND01 250 aa8.99□□□□□ -0.97
LIG3-209ENST00000586435 MSGN1A6NI15 193 aa8.99□□□□□ -0.97
LIG3-209ENST00000586435 BET1O15155 118 aa8.99□□□□□ -0.97
LIG3-209ENST00000586435 CREBL2O60519 120 aaPredicted RBP8.99□□□□□ -0.97
LIG3-209ENST00000586435 JTBO76095 146 aa8.99□□□□□ -0.97
LIG3-209ENST00000586435 GSTT2P0CG29 244 aa8.99□□□□□ -0.97
LIG3-209ENST00000586435 GSTT2BP0CG30 244 aa8.99□□□□□ -0.97
LIG3-209ENST00000586435 DUTP33316 252 aaKnown RBP8.99□□□□□ -0.97
LIG3-209ENST00000586435 PSMD7P51665 324 aa8.99□□□□□ -0.97
LIG3-209ENST00000586435 CLDN12P56749 244 aa8.99□□□□□ -0.97
LIG3-209ENST00000586435 RPS25P62851 125 aaKnown RBP8.99□□□□□ -0.97
LIG3-209ENST00000586435 MLLT11Q13015 90 aaPredicted RBP8.99□□□□□ -0.97
LIG3-209ENST00000586435 TNXAQ16473 311 aa8.99□□□□□ -0.97
LIG3-209ENST00000586435 C2orf76Q3KRA6 126 aa8.99□□□□□ -0.97
LIG3-209ENST00000586435 FAM209BQ5JX69 171 aa8.99□□□□□ -0.97
LIG3-209ENST00000586435 Q6ZS49 121 aa8.99□□□□□ -0.97
LIG3-209ENST00000586435 OSR1Q8TAX0 266 aaPredicted RBP8.99□□□□□ -0.97
LIG3-209ENST00000586435 SRSF12Q8WXF0 261 aaKnown RBP8.99□□□□□ -0.97
LIG3-209ENST00000586435 RAB3CQ96E17 227 aa8.99□□□□□ -0.97
LIG3-209ENST00000586435 HIPK2Q9H2X6 1198 aa8.99□□□□□ -0.97
LIG3-209ENST00000586435 ZNF230Q9UIE0 474 aaPredicted RBP8.99□□□□□ -0.97
LIG3-209ENST00000586435 RAB22AQ9UL26 194 aa8.99□□□□□ -0.97
LIG3-209ENST00000586435 V9GY05 133 aa8.99□□□□□ -0.97
LIG3-209ENST00000586435 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.98□□□□□ -0.97
LIG3-209ENST00000586435 TMEM272A0A1B0GTI8 110 aa8.98□□□□□ -0.97
LIG3-209ENST00000586435 BMPR1BO00238 502 aa8.98□□□□□ -0.97
LIG3-209ENST00000586435 MFNGO00587 321 aa8.98□□□□□ -0.97
LIG3-209ENST00000586435 CALRP27797 417 aaKnown RBP8.98□□□□□ -0.97
LIG3-209ENST00000586435 CD81P60033 236 aa8.98□□□□□ -0.97
LIG3-209ENST00000586435 RHOGP84095 191 aa8.98□□□□□ -0.97
LIG3-209ENST00000586435 ZNF45Q02386 682 aa8.98□□□□□ -0.97
LIG3-209ENST00000586435 EXOSC2Q13868 293 aaKnown RBP8.98□□□□□ -0.97
LIG3-209ENST00000586435 DUSP21Q9H596 190 aa8.98□□□□□ -0.97
LIG3-209ENST00000586435 PLEKHA3Q9HB20 300 aa8.98□□□□□ -0.97
LIG3-209ENST00000586435 AKIP1Q9NQ31 210 aa8.98□□□□□ -0.97
LIG3-209ENST00000586435 SLC2A8Q9NY64 477 aa8.98□□□□□ -0.97
LIG3-209ENST00000586435 LINC00473A8K010 186 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 RAB27BO00194 218 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 MPPED1O15442 326 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 TUSC2O75896 110 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 TPPPO94811 219 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 CRYZL1O95825 349 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 HSMCR30P0CW71 290 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 APELAP0DMC3 54 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 HIST1H1DP16402 221 aaKnown RBP8.97□□□□□ -0.97
LIG3-209ENST00000586435 GADD45AP24522 165 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 FABP5Q01469 135 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 ATP5G2Q06055 141 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 PLA2G7Q13093 441 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 CDK10Q15131 360 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 CD300EQ496F6 205 aaPredicted RBP8.97□□□□□ -0.97
LIG3-209ENST00000586435 IDO2Q6ZQW0 420 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 H1FOOQ8IZA3 346 aaPredicted RBP8.97□□□□□ -0.97
LIG3-209ENST00000586435 TTC9CQ8N5M4 171 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 NECAP1Q8NC96 275 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 OR10R2Q8NGX6 335 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 ACOT12Q8WYK0 555 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 KCTD12Q96CX2 325 aaKnown RBP8.97□□□□□ -0.97
LIG3-209ENST00000586435 SPIN2AQ99865 258 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 SPIN2BQ9BPZ2 258 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 NEURL2Q9BR09 285 aa8.97□□□□□ -0.97
LIG3-209ENST00000586435 GINS4Q9BRT9 223 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms