RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 NOTOA8MTQ0 251 aa15.75■□□□□ 0.11
SHMT1-209ENST00000582653 SHOXO15266 292 aa15.75■□□□□ 0.11
SHMT1-209ENST00000582653 DIRAS3O95661 229 aa15.75■□□□□ 0.11
SHMT1-209ENST00000582653 SRSF7Q16629 238 aaKnown RBP eCLIP15.75■□□□□ 0.11
SHMT1-209ENST00000582653 TMEM177Q53S58 311 aa15.75■□□□□ 0.11
SHMT1-209ENST00000582653 Q6ZS49 121 aa15.75■□□□□ 0.11
SHMT1-209ENST00000582653 DAPK2Q9UIK4 370 aa15.75■□□□□ 0.11
SHMT1-209ENST00000582653 STUB1Q9UNE7 303 aa15.75■□□□□ 0.11
SHMT1-209ENST00000582653 LINC00473A8K010 186 aa15.74■□□□□ 0.11
SHMT1-209ENST00000582653 SPNP16150 400 aa15.74■□□□□ 0.11
SHMT1-209ENST00000582653 MRGPRG-AS1Q2M3A8 158 aa15.74■□□□□ 0.11
SHMT1-209ENST00000582653 POC5Q8NA72 575 aa15.74■□□□□ 0.11
SHMT1-209ENST00000582653 OR51E2Q9H255 320 aa15.74■□□□□ 0.11
SHMT1-209ENST00000582653 C3orf84H3BNL1 204 aa15.73■□□□□ 0.11
SHMT1-209ENST00000582653 APELAP0DMC3 54 aa15.73■□□□□ 0.11
SHMT1-209ENST00000582653 DTYMKP23919 212 aa15.73■□□□□ 0.11
SHMT1-209ENST00000582653 DUTP33316 252 aaKnown RBP15.73■□□□□ 0.11
SHMT1-209ENST00000582653 DEFA5Q01523 94 aa15.73■□□□□ 0.11
SHMT1-209ENST00000582653 RTL8BQ17RB0 113 aa15.73■□□□□ 0.11
SHMT1-209ENST00000582653 HACD4Q5VWC8 232 aa15.73■□□□□ 0.11
SHMT1-209ENST00000582653 SBSPONQ8IVN8 264 aa15.73■□□□□ 0.11
SHMT1-209ENST00000582653 OR6Q1Q8NGQ2 317 aa15.73■□□□□ 0.11
SHMT1-209ENST00000582653 NUDCD2Q8WVJ2 157 aa15.73■□□□□ 0.11
SHMT1-209ENST00000582653 DDB2Q92466 427 aa15.73■□□□□ 0.11
SHMT1-209ENST00000582653 FCGR1BQ92637 280 aa15.73■□□□□ 0.11
SHMT1-209ENST00000582653 SSR3Q9UNL2 185 aa15.73■□□□□ 0.11
SHMT1-209ENST00000582653 RRP15Q9Y3B9 282 aaKnown RBP15.73■□□□□ 0.11
SHMT1-209ENST00000582653 SORL1Q92673 2214 aa15.72■□□□□ 0.11
SHMT1-209ENST00000582653 TMEM235A6NFC5 223 aa15.72■□□□□ 0.11
SHMT1-209ENST00000582653 CLEC2LP0C7M8 214 aa15.72■□□□□ 0.11
SHMT1-209ENST00000582653 RRASP10301 218 aa15.72■□□□□ 0.11
SHMT1-209ENST00000582653 GP9P14770 177 aa15.72■□□□□ 0.11
SHMT1-209ENST00000582653 NFYAP23511 347 aaPredicted RBP15.72■□□□□ 0.11
SHMT1-209ENST00000582653 TAGLNQ01995 201 aaKnown RBP15.72■□□□□ 0.11
SHMT1-209ENST00000582653 CBX3Q13185 183 aa15.72■□□□□ 0.11
SHMT1-209ENST00000582653 ARL6IP1Q15041 203 aa15.72■□□□□ 0.11
SHMT1-209ENST00000582653 IDO2Q6ZQW0 420 aa15.72■□□□□ 0.11
SHMT1-209ENST00000582653 TPRA1Q86W33 373 aa15.72■□□□□ 0.11
SHMT1-209ENST00000582653 OR4C12Q96R67 309 aa15.72■□□□□ 0.11
SHMT1-209ENST00000582653 YTHDF1Q9BYJ9 559 aaKnown RBP15.72■□□□□ 0.11
SHMT1-209ENST00000582653 Q9H521 79 aa15.72■□□□□ 0.11
SHMT1-209ENST00000582653 RNF167Q9H6Y7 350 aa15.72■□□□□ 0.11
SHMT1-209ENST00000582653 C13orf42A0A1B0GVH6 325 aa15.71■□□□□ 0.11
SHMT1-209ENST00000582653 ANKRD34BA5PLL1 514 aa15.71■□□□□ 0.11
SHMT1-209ENST00000582653 CRYZL1O95825 349 aa15.71■□□□□ 0.11
SHMT1-209ENST00000582653 SDC2P34741 201 aa15.71■□□□□ 0.11
SHMT1-209ENST00000582653 PITPNAQ00169 270 aa15.71■□□□□ 0.11
SHMT1-209ENST00000582653 MXD1Q05195 221 aa15.71■□□□□ 0.11
SHMT1-209ENST00000582653 SFXN4Q6P4A7 337 aa15.71■□□□□ 0.11
SHMT1-209ENST00000582653 HAPLN4Q86UW8 402 aa15.71■□□□□ 0.11
SHMT1-209ENST00000582653 LGALS14Q8TCE9 139 aa15.71■□□□□ 0.11
SHMT1-209ENST00000582653 CENPOQ9BU64 300 aa15.71■□□□□ 0.11
SHMT1-209ENST00000582653 MSGN1A6NI15 193 aa15.7■□□□□ 0.1
SHMT1-209ENST00000582653 H3BUA1 57 aa15.7■□□□□ 0.1
SHMT1-209ENST00000582653 SSX5O60225 188 aa15.7■□□□□ 0.1
SHMT1-209ENST00000582653 ADTRPQ96IZ2 230 aa15.7■□□□□ 0.1
SHMT1-209ENST00000582653 TMEM68Q96MH6 324 aa15.7■□□□□ 0.1
SHMT1-209ENST00000582653 PHB2Q99623 299 aa15.7■□□□□ 0.1
SHMT1-209ENST00000582653 ELOVL1Q9BW60 279 aa15.7■□□□□ 0.1
SHMT1-209ENST00000582653 RANGRFQ9HD47 186 aaPredicted RBP15.7■□□□□ 0.1
SHMT1-209ENST00000582653 BRI3O95415 125 aa15.69■□□□□ 0.1
SHMT1-209ENST00000582653 UBE2KP61086 200 aa15.69■□□□□ 0.1
SHMT1-209ENST00000582653 TNXAQ16473 311 aa15.69■□□□□ 0.1
SHMT1-209ENST00000582653 PRSS8Q16651 343 aa15.69■□□□□ 0.1
SHMT1-209ENST00000582653 VMA21Q3ZAQ7 101 aa15.69■□□□□ 0.1
SHMT1-209ENST00000582653 ZNF773Q6PK81 442 aa15.69■□□□□ 0.1
SHMT1-209ENST00000582653 OVCH2Q7RTZ1 564 aa15.69■□□□□ 0.1
SHMT1-209ENST00000582653 ZNF645Q8N7E2 425 aa15.69■□□□□ 0.1
SHMT1-209ENST00000582653 TEX45Q8NA69 505 aa15.69■□□□□ 0.1
SHMT1-209ENST00000582653 OR5H6Q8NGV6 325 aa15.69■□□□□ 0.1
SHMT1-209ENST00000582653 TINAGL1Q9GZM7 467 aaPredicted RBP15.69■□□□□ 0.1
SHMT1-209ENST00000582653 DCSTAMPQ9H295 470 aa15.69■□□□□ 0.1
SHMT1-209ENST00000582653 COA4Q9NYJ1 87 aa15.69■□□□□ 0.1
SHMT1-209ENST00000582653 OR2W1Q9Y3N9 320 aa15.69■□□□□ 0.1
SHMT1-209ENST00000582653 IGKV1D-13A0A0B4J2D9 117 aa15.68■□□□□ 0.1
SHMT1-209ENST00000582653 A0A0G2JLM5 398 aa15.68■□□□□ 0.1
SHMT1-209ENST00000582653 FCGR3BO75015 233 aa15.68■□□□□ 0.1
SHMT1-209ENST00000582653 RBMXL2O75526 392 aaKnown RBP15.68■□□□□ 0.1
SHMT1-209ENST00000582653 TUSC2O75896 110 aa15.68■□□□□ 0.1
SHMT1-209ENST00000582653 IGLV2-14P01704 120 aa15.68■□□□□ 0.1
SHMT1-209ENST00000582653 HLA-DQB1P01920 261 aa15.68■□□□□ 0.1
SHMT1-209ENST00000582653 CTXN2P0C2S0 81 aa15.68■□□□□ 0.1
SHMT1-209ENST00000582653 FRMD6-AS1P0C7T7 363 aa15.68■□□□□ 0.1
SHMT1-209ENST00000582653 IGKV1-13P0DP09 117 aa15.68■□□□□ 0.1
SHMT1-209ENST00000582653 GNG2P59768 71 aa15.68■□□□□ 0.1
SHMT1-209ENST00000582653 RPL30P62888 115 aaKnown RBP15.68■□□□□ 0.1
SHMT1-209ENST00000582653 OR2B11Q5JQS5 317 aa15.68■□□□□ 0.1
SHMT1-209ENST00000582653 ACOT12Q8WYK0 555 aa15.68■□□□□ 0.1
SHMT1-209ENST00000582653 RCHY1Q96PM5 261 aa15.68■□□□□ 0.1
SHMT1-209ENST00000582653 DCUN1D5Q9BTE7 237 aa15.68■□□□□ 0.1
SHMT1-209ENST00000582653 RHBDL2Q9NX52 303 aa15.68■□□□□ 0.1
SHMT1-209ENST00000582653 LOC100506127A0A0U1RQW1 187 aa15.67■□□□□ 0.1
SHMT1-209ENST00000582653 TRIM64CA6NLI5 447 aa15.67■□□□□ 0.1
SHMT1-209ENST00000582653 NEDD8Q15843 81 aa15.67■□□□□ 0.1
SHMT1-209ENST00000582653 CNIH2Q6PI25 160 aa15.67■□□□□ 0.1
SHMT1-209ENST00000582653 OSR1Q8TAX0 266 aaPredicted RBP15.67■□□□□ 0.1
SHMT1-209ENST00000582653 RSRP1Q9BUV0 290 aa15.67■□□□□ 0.1
SHMT1-209ENST00000582653 ANXA10Q9UJ72 324 aa15.67■□□□□ 0.1
SHMT1-209ENST00000582653 RBMX2Q9Y388 322 aaKnown RBP15.67■□□□□ 0.1
SHMT1-209ENST00000582653 SCGNO76038 276 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms