RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 VSIG4Q9Y279 399 aa18.62■□□□□ 0.57
SHMT1-206ENST00000579558 IGKV1D-13A0A0B4J2D9 117 aa18.61■□□□□ 0.57
SHMT1-206ENST00000579558 XRCC3O43542 346 aa18.61■□□□□ 0.57
SHMT1-206ENST00000579558 SOX15O60248 233 aa18.61■□□□□ 0.57
SHMT1-206ENST00000579558 SLC22A5O76082 557 aa18.61■□□□□ 0.57
SHMT1-206ENST00000579558 IGKV1-13P0DP09 117 aa18.61■□□□□ 0.57
SHMT1-206ENST00000579558 KIAA0141Q14154 515 aaPredicted RBP18.61■□□□□ 0.57
SHMT1-206ENST00000579558 FXYD3Q14802 87 aa18.61■□□□□ 0.57
SHMT1-206ENST00000579558 GRPEL2Q8TAA5 225 aa18.61■□□□□ 0.57
SHMT1-206ENST00000579558 SLC25A46Q96AG3 418 aa18.61■□□□□ 0.57
SHMT1-206ENST00000579558 GNB4Q9HAV0 340 aa18.61■□□□□ 0.57
SHMT1-206ENST00000579558 TUSC2O75896 110 aa18.6■□□□□ 0.57
SHMT1-206ENST00000579558 CRYZL1O95825 349 aa18.6■□□□□ 0.57
SHMT1-206ENST00000579558 FCER2P06734 321 aa18.6■□□□□ 0.57
SHMT1-206ENST00000579558 CRYGBP07316 175 aa18.6■□□□□ 0.57
SHMT1-206ENST00000579558 SMIM18P0DKX4 95 aa18.6■□□□□ 0.57
SHMT1-206ENST00000579558 CBX5P45973 191 aa18.6■□□□□ 0.57
SHMT1-206ENST00000579558 VBP1P61758 197 aa18.6■□□□□ 0.57
SHMT1-206ENST00000579558 GNB1P62873 340 aa18.6■□□□□ 0.57
SHMT1-206ENST00000579558 ACTBL2Q562R1 376 aa18.6■□□□□ 0.57
SHMT1-206ENST00000579558 LFNGQ8NES3 379 aa18.6■□□□□ 0.57
SHMT1-206ENST00000579558 RBMX2Q9Y388 322 aaKnown RBP18.6■□□□□ 0.57
SHMT1-206ENST00000579558 SRRM4A7MD48 611 aaKnown RBP18.59■□□□□ 0.57
SHMT1-206ENST00000579558 ARPC1BO15143 372 aaKnown RBP18.59■□□□□ 0.57
SHMT1-206ENST00000579558 CNIH1O95406 144 aa18.59■□□□□ 0.57
SHMT1-206ENST00000579558 PJVKQ0ZLH3 352 aa18.59■□□□□ 0.57
SHMT1-206ENST00000579558 AKIRIN2Q53H80 203 aa18.59■□□□□ 0.57
SHMT1-206ENST00000579558 TMEM69Q5SWH9 247 aa18.59■□□□□ 0.57
SHMT1-206ENST00000579558 KCTD9Q7L273 389 aa18.59■□□□□ 0.57
SHMT1-206ENST00000579558 CASTOR1Q8WTX7 329 aa18.59■□□□□ 0.57
SHMT1-206ENST00000579558 DPF1Q92782 380 aa18.59■□□□□ 0.57
SHMT1-206ENST00000579558 KCTD12Q96CX2 325 aaKnown RBP18.59■□□□□ 0.57
SHMT1-206ENST00000579558 OR5B12Q96R08 314 aa18.59■□□□□ 0.57
SHMT1-206ENST00000579558 MEIS3P1A6NDR6 274 aa18.58■□□□□ 0.56
SHMT1-206ENST00000579558 HOXD3P31249 432 aaPredicted RBP18.58■□□□□ 0.56
SHMT1-206ENST00000579558 VMA21Q3ZAQ7 101 aa18.58■□□□□ 0.56
SHMT1-206ENST00000579558 PYHIN1Q6K0P9 492 aa18.58■□□□□ 0.56
SHMT1-206ENST00000579558 OR11H1Q8NG94 326 aa18.58■□□□□ 0.56
SHMT1-206ENST00000579558 OR5M8Q8NGP6 311 aa18.58■□□□□ 0.56
SHMT1-206ENST00000579558 MRAPQ8TCY5 172 aa18.58■□□□□ 0.56
SHMT1-206ENST00000579558 IFT46Q9NQC8 304 aa18.58■□□□□ 0.56
SHMT1-206ENST00000579558 PRELID3BQ9Y3B1 194 aa18.58■□□□□ 0.56
SHMT1-206ENST00000579558 I3L521 148 aa18.57■□□□□ 0.56
SHMT1-206ENST00000579558 FCGR3BO75015 233 aa18.57■□□□□ 0.56
SHMT1-206ENST00000579558 IGLV2-14P01704 120 aa18.57■□□□□ 0.56
SHMT1-206ENST00000579558 AADACP22760 399 aa18.57■□□□□ 0.56
SHMT1-206ENST00000579558 FCGR2CP31995 323 aa18.57■□□□□ 0.56
SHMT1-206ENST00000579558 TAS2R20P59543 309 aa18.57■□□□□ 0.56
SHMT1-206ENST00000579558 RUNX1Q01196 453 aa18.57■□□□□ 0.56
SHMT1-206ENST00000579558 FHL3Q13643 280 aa18.57■□□□□ 0.56
SHMT1-206ENST00000579558 OSR1Q8TAX0 266 aaPredicted RBP18.57■□□□□ 0.56
SHMT1-206ENST00000579558 SNAPC3Q92966 411 aa18.57■□□□□ 0.56
SHMT1-206ENST00000579558 DCUN1D5Q9BTE7 237 aa18.57■□□□□ 0.56
SHMT1-206ENST00000579558 CD40LGP29965 261 aa18.56■□□□□ 0.56
SHMT1-206ENST00000579558 UBE2KP61086 200 aa18.56■□□□□ 0.56
SHMT1-206ENST00000579558 RPL30P62888 115 aaKnown RBP18.56■□□□□ 0.56
SHMT1-206ENST00000579558 SSBP2P81877 361 aaPredicted RBP18.56■□□□□ 0.56
SHMT1-206ENST00000579558 OR2B11Q5JQS5 317 aa18.56■□□□□ 0.56
SHMT1-206ENST00000579558 TEX45Q8NA69 505 aa18.56■□□□□ 0.56
SHMT1-206ENST00000579558 OR1N2Q8NGR9 330 aa18.56■□□□□ 0.56
SHMT1-206ENST00000579558 HSD17B10Q99714 261 aaKnown RBP18.56■□□□□ 0.56
SHMT1-206ENST00000579558 COMMD3Q9UBI1 195 aa18.56■□□□□ 0.56
SHMT1-206ENST00000579558 MRPS7Q9Y2R9 242 aaKnown RBP18.56■□□□□ 0.56
SHMT1-206ENST00000579558 KRTAP10-11P60412 298 aa18.55■□□□□ 0.56
SHMT1-206ENST00000579558 EGFEM1PQ0D2K5 195 aa18.55■□□□□ 0.56
SHMT1-206ENST00000579558 OVCH2Q7RTZ1 564 aa18.55■□□□□ 0.56
SHMT1-206ENST00000579558 OR5AP2Q8NGF4 316 aa18.55■□□□□ 0.56
SHMT1-206ENST00000579558 SECTM1Q8WVN6 248 aa18.55■□□□□ 0.56
SHMT1-206ENST00000579558 TCTEX1D2Q8WW35 142 aa18.55■□□□□ 0.56
SHMT1-206ENST00000579558 MS4A10Q96PG2 267 aa18.55■□□□□ 0.56
SHMT1-206ENST00000579558 DNAH3Q8TD57 4116 aa18.54■□□□□ 0.56
SHMT1-206ENST00000579558 PPYP01298 95 aa18.54■□□□□ 0.56
SHMT1-206ENST00000579558 EIF4EP06730 217 aaKnown RBP18.54■□□□□ 0.56
SHMT1-206ENST00000579558 OR8U8P0C7N1 319 aa18.54■□□□□ 0.56
SHMT1-206ENST00000579558 TPPP2P59282 170 aa18.54■□□□□ 0.56
SHMT1-206ENST00000579558 ZNF616Q08AN1 781 aa18.54■□□□□ 0.56
SHMT1-206ENST00000579558 CDK10Q15131 360 aa18.54■□□□□ 0.56
SHMT1-206ENST00000579558 IDO2Q6ZQW0 420 aa18.54■□□□□ 0.56
SHMT1-206ENST00000579558 ANKRD13BQ86YJ7 626 aa18.54■□□□□ 0.56
SHMT1-206ENST00000579558 MRPS26Q9BYN8 205 aaKnown RBP18.54■□□□□ 0.56
SHMT1-206ENST00000579558 NAA50Q9GZZ1 169 aaKnown RBP18.54■□□□□ 0.56
SHMT1-206ENST00000579558 TAS2R8Q9NYW2 309 aa18.54■□□□□ 0.56
SHMT1-206ENST00000579558 GABARAPO95166 117 aa18.53■□□□□ 0.56
SHMT1-206ENST00000579558 SAA1P0DJI8 122 aaPredicted RBP18.53■□□□□ 0.56
SHMT1-206ENST00000579558 EIF4EBP1Q13541 118 aaPredicted RBP18.53■□□□□ 0.56
SHMT1-206ENST00000579558 PRSS8Q16651 343 aa18.53■□□□□ 0.56
SHMT1-206ENST00000579558 MRGPRG-AS1Q2M3A8 158 aa18.53■□□□□ 0.56
SHMT1-206ENST00000579558 ACOT12Q8WYK0 555 aa18.53■□□□□ 0.56
SHMT1-206ENST00000579558 ALX4Q9H161 411 aaPredicted RBP18.53■□□□□ 0.56
SHMT1-206ENST00000579558 SLA2Q9H6Q3 261 aa18.53■□□□□ 0.56
SHMT1-206ENST00000579558 CCL28Q9NRJ3 127 aa18.53■□□□□ 0.56
SHMT1-206ENST00000579558 ZNF355PQ9NSJ1 428 aa18.53■□□□□ 0.56
SHMT1-206ENST00000579558 APOA1P02647 267 aa18.52■□□□□ 0.56
SHMT1-206ENST00000579558 LGALS1P09382 135 aaKnown RBP18.52■□□□□ 0.56
SHMT1-206ENST00000579558 RORCP51449 518 aa18.52■□□□□ 0.56
SHMT1-206ENST00000579558 FXYD4P59646 89 aa18.52■□□□□ 0.56
SHMT1-206ENST00000579558 MSMO1Q15800 293 aa18.52■□□□□ 0.56
SHMT1-206ENST00000579558 TNXAQ16473 311 aa18.52■□□□□ 0.56
SHMT1-206ENST00000579558 ASPHD1Q5U4P2 390 aa18.52■□□□□ 0.56
SHMT1-206ENST00000579558 GPR107Q5VW38 600 aa18.52■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms