RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 PLSCR3Q9NRY6 295 aa6.83□□□□□ -1.32
NUP88-211ENST00000575976 GPR132Q9UNW8 380 aa6.83□□□□□ -1.32
NUP88-211ENST00000575976 PRELID3BQ9Y3B1 194 aa6.83□□□□□ -1.32
NUP88-211ENST00000575976 CUBNO60494 3623 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 SH2D7A6NKC9 451 aaPredicted RBP6.82□□□□□ -1.32
NUP88-211ENST00000575976 NCBP2LA6PVI3 153 aaKnown RBP6.82□□□□□ -1.32
NUP88-211ENST00000575976 CENPXA8MT69 81 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 CRYZL1O95825 349 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 IGKV1-16P04430 117 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 AMY1AP04745 511 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 CRYBA1P05813 215 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 BTCP35070 178 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 CCR6P51684 374 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 PIGPP57054 158 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 RND3P61587 244 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 RPS16P62249 146 aaKnown RBP6.82□□□□□ -1.32
NUP88-211ENST00000575976 BLCAPP62952 87 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 RELBQ01201 579 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 CATR1Q13166 79 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 SURF2Q15527 256 aaPredicted RBP6.82□□□□□ -1.32
NUP88-211ENST00000575976 MMDQ15546 238 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 RTL8BQ17RB0 113 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 KRTAP24-1Q3LI83 254 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 ABCA11PQ4W5N1 156 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 TMEM177Q53S58 311 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 DHRS7BQ6IAN0 325 aaPredicted RBP6.82□□□□□ -1.32
NUP88-211ENST00000575976 Q6ZS46 218 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 TBC1D26Q86UD7 250 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 SPAG16Q8N0X2 631 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.82□□□□□ -1.32
NUP88-211ENST00000575976 Q8N9W7 124 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 OR4C13Q8NGP0 309 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 ZFAND2BQ8WV99 257 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 FLYWCH2Q96CP2 140 aaKnown RBP6.82□□□□□ -1.32
NUP88-211ENST00000575976 ZNF486Q96H40 463 aaPredicted RBP6.82□□□□□ -1.32
NUP88-211ENST00000575976 RNF5Q99942 180 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 C5orf66Q9H5L9 145 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 RAB18Q9NP72 206 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 SLC2A9Q9NRM0 540 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 C1RLQ9NZP8 487 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 TBC1D24Q9ULP9 559 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 VSIG4Q9Y279 399 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 MOB4Q9Y3A3 225 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 ANK2Q01484 3957 aa6.82□□□□□ -1.32
NUP88-211ENST00000575976 SRRM4A7MD48 611 aaKnown RBP6.81□□□□□ -1.32
NUP88-211ENST00000575976 SHOXO15266 292 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 MPPED1O15442 326 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 FGF16O43320 207 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 LYRM1O43325 122 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 RAMP3O60896 148 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 NDUFA3O95167 84 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 F2RP25116 425 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 S100GP29377 79 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 KIR2DS2P43631 304 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 RPL15P61313 204 aaKnown RBP6.81□□□□□ -1.32
NUP88-211ENST00000575976 CBX3Q13185 183 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 PSG5Q15238 335 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 ZNF585BQ52M93 769 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 C11orf88Q6PI97 169 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 Q6ZSV7 163 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 C5orf56Q8N8D9 126 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 CCDC71LQ8N9Z2 235 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 ADAD2Q8NCV1 583 aaKnown RBP6.81□□□□□ -1.32
NUP88-211ENST00000575976 NPBQ8NG41 125 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 OR8H1Q8NGG4 311 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 HARBI1Q96MB7 349 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 SCGB3A2Q96PL1 93 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 TSC22D3Q99576 134 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 SLC25A21Q9BQT8 299 aaPredicted RBP6.81□□□□□ -1.32
NUP88-211ENST00000575976 NPFFR1Q9GZQ6 430 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 FBXL15Q9H469 300 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 COPZ2Q9P299 210 aa6.81□□□□□ -1.32
NUP88-211ENST00000575976 C14orf166Q9Y224 244 aaKnown RBP6.81□□□□□ -1.32
NUP88-211ENST00000575976 C3orf85A0A1B0GTC6 90 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 M0QZK8 103 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 RRHO14718 337 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 NBR2O15453 112 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 RBFOX2O43251 390 aaKnown RBP eCLIP6.8□□□□□ -1.32
NUP88-211ENST00000575976 TSPAN9O75954 239 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 S1PR2O95136 353 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 NDUFB6O95139 128 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 IGLV2-23P01705 113 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 CRYGBP07316 175 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 VSIG10L2P0DP72 767 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 HKR1P10072 659 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 LPAR6P43657 344 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 LGALS7P47929 136 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 RBMS2Q15434 407 aaKnown RBP6.8□□□□□ -1.32
NUP88-211ENST00000575976 C5orf64Q2M2E5 130 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 FAM71E2Q8N5Q1 922 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 POC5Q8NA72 575 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 OR4S2Q8NH73 311 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 OSR1Q8TAX0 266 aaPredicted RBP6.8□□□□□ -1.32
NUP88-211ENST00000575976 TMEM230Q96A57 120 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 TP53RKQ96S44 253 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 TSNAXQ99598 290 aaKnown RBP6.8□□□□□ -1.32
NUP88-211ENST00000575976 RASL11BQ9BPW5 248 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 RANBP3Q9H6Z4 567 aaPredicted RBP6.8□□□□□ -1.32
NUP88-211ENST00000575976 ZNF702PQ9H963 129 aa6.8□□□□□ -1.32
NUP88-211ENST00000575976 LIN7CQ9NUP9 197 aaKnown RBP6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms