RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 IL1F10Q8WWZ1 152 aa11.43□□□□□ -0.58
VPS53-218ENST00000575207 EEF1AKMT3Q96AZ1 226 aa11.43□□□□□ -0.58
VPS53-218ENST00000575207 HARBI1Q96MB7 349 aa11.43□□□□□ -0.58
VPS53-218ENST00000575207 SPIN2AQ99865 258 aa11.43□□□□□ -0.58
VPS53-218ENST00000575207 SPIN2BQ9BPZ2 258 aa11.43□□□□□ -0.58
VPS53-218ENST00000575207 SLC35D1Q9NTN3 355 aa11.43□□□□□ -0.58
VPS53-218ENST00000575207 PAK1IP1Q9NWT1 392 aaPredicted RBP11.43□□□□□ -0.58
VPS53-218ENST00000575207 IGHV3-35A0A0C4DH35 117 aa11.42□□□□□ -0.58
VPS53-218ENST00000575207 A0A1W2PP11 408 aa11.42□□□□□ -0.58
VPS53-218ENST00000575207 GTF2F2P13984 249 aa11.42□□□□□ -0.58
VPS53-218ENST00000575207 FUT3P21217 361 aa11.42□□□□□ -0.58
VPS53-218ENST00000575207 PRSS8Q16651 343 aa11.42□□□□□ -0.58
VPS53-218ENST00000575207 AADACL4Q5VUY2 407 aa11.42□□□□□ -0.58
VPS53-218ENST00000575207 OR51A2Q8NGJ7 313 aa11.42□□□□□ -0.58
VPS53-218ENST00000575207 ACOT12Q8WYK0 555 aa11.42□□□□□ -0.58
VPS53-218ENST00000575207 NSL1Q96IY1 281 aa11.42□□□□□ -0.58
VPS53-218ENST00000575207 S100A13Q99584 98 aa11.42□□□□□ -0.58
VPS53-218ENST00000575207 ATG101Q9BSB4 218 aa11.42□□□□□ -0.58
VPS53-218ENST00000575207 ZNF556Q9HAH1 456 aa11.42□□□□□ -0.58
VPS53-218ENST00000575207 DAZ1Q9NQZ3 744 aaKnown RBP11.42□□□□□ -0.58
VPS53-218ENST00000575207 ARL8BQ9NVJ2 186 aa11.42□□□□□ -0.58
VPS53-218ENST00000575207 TBC1D24Q9ULP9 559 aa11.42□□□□□ -0.58
VPS53-218ENST00000575207 ZNF257Q9Y2Q1 563 aa11.42□□□□□ -0.58
VPS53-218ENST00000575207 PEX16Q9Y5Y5 336 aa11.42□□□□□ -0.58
VPS53-218ENST00000575207 ETV7Q9Y603 341 aa11.42□□□□□ -0.58
VPS53-218ENST00000575207 OXTP01178 125 aa11.41□□□□□ -0.58
VPS53-218ENST00000575207 CLEC3BP05452 202 aa11.41□□□□□ -0.58
VPS53-218ENST00000575207 PRB4P10163 310 aaPredicted RBP11.41□□□□□ -0.58
VPS53-218ENST00000575207 FUSP35637 526 aaKnown RBP eCLIP11.41□□□□□ -0.58
VPS53-218ENST00000575207 TFPI2P48307 235 aa11.41□□□□□ -0.58
VPS53-218ENST00000575207 CCR9P51686 369 aa11.41□□□□□ -0.58
VPS53-218ENST00000575207 FDX2Q6P4F2 183 aa11.41□□□□□ -0.58
VPS53-218ENST00000575207 MRPL30Q8TCC3 161 aaKnown RBP11.41□□□□□ -0.58
VPS53-218ENST00000575207 TMEM190Q8WZ59 177 aa11.41□□□□□ -0.58
VPS53-218ENST00000575207 ZNF436Q9C0F3 470 aaPredicted RBP11.41□□□□□ -0.58
VPS53-218ENST00000575207 ABRACLQ9P1F3 81 aa11.41□□□□□ -0.58
VPS53-218ENST00000575207 FAT4Q6V0I7 4981 aa11.41□□□□□ -0.58
VPS53-218ENST00000575207 UBE2QL1A1L167 161 aa11.4□□□□□ -0.58
VPS53-218ENST00000575207 M0R129 80 aa11.4□□□□□ -0.58
VPS53-218ENST00000575207 ITGB1BP1O14713 200 aa11.4□□□□□ -0.58
VPS53-218ENST00000575207 ZNF780AO75290 641 aaPredicted RBP11.4□□□□□ -0.58
VPS53-218ENST00000575207 HMGN3Q15651 99 aa11.4□□□□□ -0.58
VPS53-218ENST00000575207 SLC22A6Q4U2R8 563 aa11.4□□□□□ -0.58
VPS53-218ENST00000575207 C19orf35Q6ZS72 473 aa11.4□□□□□ -0.58
VPS53-218ENST00000575207 V9GYY5 206 aaPredicted RBP11.4□□□□□ -0.58
VPS53-218ENST00000575207 OR4C45A6NMZ5 311 aa11.39□□□□□ -0.59
VPS53-218ENST00000575207 SRRM4A7MD48 611 aaKnown RBP11.39□□□□□ -0.59
VPS53-218ENST00000575207 GID4Q8IVV7 300 aa11.39□□□□□ -0.59
VPS53-218ENST00000575207 CSNK1G2-AS1Q8NCQ2 148 aa11.39□□□□□ -0.59
VPS53-218ENST00000575207 MAGIXQ9H6Y5 334 aa11.39□□□□□ -0.59
VPS53-218ENST00000575207 TMEM14BQ9NUH8 114 aa11.39□□□□□ -0.59
VPS53-218ENST00000575207 ZNF221Q9UK13 617 aa11.39□□□□□ -0.59
VPS53-218ENST00000575207 DNAH8Q96JB1 4490 aa11.39□□□□□ -0.59
VPS53-218ENST00000575207 TRBV7-1A0A0A6YYK4 115 aa11.38□□□□□ -0.59
VPS53-218ENST00000575207 HTR1AP08908 422 aa11.38□□□□□ -0.59
VPS53-218ENST00000575207 SPART-AS1P0CW21 52 aa11.38□□□□□ -0.59
VPS53-218ENST00000575207 RPA2P15927 270 aa11.38□□□□□ -0.59
VPS53-218ENST00000575207 TMEM88Q6PEY1 159 aa11.38□□□□□ -0.59
VPS53-218ENST00000575207 CYP2R1Q6VVX0 501 aa11.38□□□□□ -0.59
VPS53-218ENST00000575207 IDO2Q6ZQW0 420 aa11.38□□□□□ -0.59
VPS53-218ENST00000575207 TEX45Q8NA69 505 aa11.38□□□□□ -0.59
VPS53-218ENST00000575207 FANCD2OSQ96PS1 177 aa11.38□□□□□ -0.59
VPS53-218ENST00000575207 KRTAP1-5Q9BYS1 174 aa11.38□□□□□ -0.59
VPS53-218ENST00000575207 PRRG3Q9BZD7 231 aa11.38□□□□□ -0.59
VPS53-218ENST00000575207 C11orf54Q9H0W9 315 aaPredicted RBP11.38□□□□□ -0.59
VPS53-218ENST00000575207 WARS2Q9UGM6 360 aaKnown RBP11.38□□□□□ -0.59
VPS53-218ENST00000575207 ACTL6BO94805 426 aa11.37□□□□□ -0.59
VPS53-218ENST00000575207 IFNA5P01569 189 aa11.37□□□□□ -0.59
VPS53-218ENST00000575207 GPR183P32249 361 aa11.37□□□□□ -0.59
VPS53-218ENST00000575207 ZNF85Q03923 595 aa11.37□□□□□ -0.59
VPS53-218ENST00000575207 KLK9Q2XQG4 91 aa11.37□□□□□ -0.59
VPS53-218ENST00000575207 VMA21Q3ZAQ7 101 aa11.37□□□□□ -0.59
VPS53-218ENST00000575207 FAM98BQ52LJ0 330 aaKnown RBP11.37□□□□□ -0.59
VPS53-218ENST00000575207 PLET1Q6UQ28 207 aa11.37□□□□□ -0.59
VPS53-218ENST00000575207 CEACAM19Q7Z692 300 aa11.37□□□□□ -0.59
VPS53-218ENST00000575207 EDARADDQ8WWZ3 215 aa11.37□□□□□ -0.59
VPS53-218ENST00000575207 CYYR1Q96J86 154 aa11.37□□□□□ -0.59
VPS53-218ENST00000575207 OR14A2Q96R54 314 aa11.37□□□□□ -0.59
VPS53-218ENST00000575207 ISG20L2Q9H9L3 353 aaKnown RBP11.37□□□□□ -0.59
VPS53-218ENST00000575207 KLK9Q9UKQ9 250 aa11.37□□□□□ -0.59
VPS53-218ENST00000575207 M0R1X1 148 aa11.36□□□□□ -0.59
VPS53-218ENST00000575207 DYNC1I1O14576 645 aa11.36□□□□□ -0.59
VPS53-218ENST00000575207 PLA2G1BP04054 148 aaKnown RBP11.36□□□□□ -0.59
VPS53-218ENST00000575207 GLAP06280 429 aa11.36□□□□□ -0.59
VPS53-218ENST00000575207 SPP1P10451 314 aa11.36□□□□□ -0.59
VPS53-218ENST00000575207 C4BPBP20851 252 aa11.36□□□□□ -0.59
VPS53-218ENST00000575207 ZNF93P35789 620 aaPredicted RBP11.36□□□□□ -0.59
VPS53-218ENST00000575207 ATP6V1E1P36543 226 aa11.36□□□□□ -0.59
VPS53-218ENST00000575207 UBE2KP61086 200 aa11.36□□□□□ -0.59
VPS53-218ENST00000575207 CBX3Q13185 183 aa11.36□□□□□ -0.59
VPS53-218ENST00000575207 C10orf55Q5SWW7 151 aa11.36□□□□□ -0.59
VPS53-218ENST00000575207 LEMD1Q68G75 181 aa11.36□□□□□ -0.59
VPS53-218ENST00000575207 STHQ8IWL8 128 aa11.36□□□□□ -0.59
VPS53-218ENST00000575207 DPPA5A6NC42 116 aa11.35□□□□□ -0.59
VPS53-218ENST00000575207 MFSD2BA6NFX1 497 aa11.35□□□□□ -0.59
VPS53-218ENST00000575207 NPIPB5A8MRT5 1133 aa11.35□□□□□ -0.59
VPS53-218ENST00000575207 BAG2O95816 211 aa11.35□□□□□ -0.59
VPS53-218ENST00000575207 SOX2P48431 317 aa11.35□□□□□ -0.59
VPS53-218ENST00000575207 DLK1P80370 383 aa11.35□□□□□ -0.59
VPS53-218ENST00000575207 HAMPP81172 84 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms