RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 OXA1LQ15070 435 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 CDK5R1Q15078 307 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 FAM106AQ4KMX7 169 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 XP32Q5T750 250 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 ARL9Q6T311 187 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 PNLDC1Q8NA58 520 aaKnown RBP5.59□□□□□ -1.51
VPS53-217ENST00000575100 OR1M1Q8NGA1 313 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 OR51A4Q8NGJ6 313 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 OR10K1Q8NGX5 313 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 OR10AC1Q8NH08 325 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 OR4K15Q8NH41 348 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 SFT2D1Q8WV19 159 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 RGP1Q92546 391 aaPredicted RBP5.59□□□□□ -1.51
VPS53-217ENST00000575100 CPNE2Q96FN4 548 aaPredicted RBP5.59□□□□□ -1.51
VPS53-217ENST00000575100 ZNF488Q96MN9 340 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 SFXN3Q9BWM7 321 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 TMEM59Q9BXS4 323 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 MROQ9BYG7 248 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 NDUFB11Q9NX14 153 aa5.59□□□□□ -1.51
VPS53-217ENST00000575100 A0A0G2JMP0 313 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 hCG_38984A0A1B0GV85 526 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 EEF1E1-BLOC1S5C9J1V9 151 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 ZNF878C9JN71 531 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 RGS5O15539 181 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 EEF1E1O43324 174 aaKnown RBP5.58□□□□□ -1.52
VPS53-217ENST00000575100 SOX15O60248 233 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 CD79AP11912 226 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 CRYGSP22914 178 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 PMELP40967 661 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 GUCA1AP43080 201 aaPredicted RBP5.58□□□□□ -1.52
VPS53-217ENST00000575100 NR4A2P43354 598 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 KIR2DS4P43632 304 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 PDLIM4P50479 330 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 NCS1P62166 190 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 RPS11P62280 158 aaKnown RBP eCLIP5.58□□□□□ -1.52
VPS53-217ENST00000575100 RPL19P84098 196 aaKnown RBP5.58□□□□□ -1.52
VPS53-217ENST00000575100 FABP5Q01469 135 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 PABPC1L2AQ5JQF8 200 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 WDR38Q5JTN6 314 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 FAM27D1Q5T7N8 215 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 TMED4Q7Z7H5 227 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 TMEM219Q86XT9 240 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 ODF3L1Q8IXM7 274 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 OR2G2Q8NGZ5 317 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 RPS4Y2Q8TD47 263 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 ASB17Q8WXJ9 295 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 RASL10AQ92737 203 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 GHSRQ92847 366 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 ISOC1Q96CN7 298 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 SMIM19Q96E16 107 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 PDCD10Q9BUL8 212 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 C1QTNF6Q9BXI9 259 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 OR2H1Q9GZK4 316 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 RBKSQ9H477 322 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 KCNJ16Q9NPI9 418 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 FAM206AQ9NX38 181 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 ZNF629Q9UEG4 869 aaPredicted RBP5.58□□□□□ -1.52
VPS53-217ENST00000575100 RTTNQ86VV8 2226 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 PRR14LQ5THK1 2151 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 A0A0X1KG70 313 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 KIR2DS1A0A191URI9 304 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 LINC00862A6NCI5 91 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 NKX2-6A6NCS4 301 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 OR6C6A6NF89 314 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 OR4C45A6NMZ5 311 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 F5H5K5 113 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 MRPS12O15235 138 aaKnown RBP5.58□□□□□ -1.52
VPS53-217ENST00000575100 CD74P04233 296 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 IGFBP3P17936 291 aaPredicted RBP5.58□□□□□ -1.52
VPS53-217ENST00000575100 SERPINA2P20848 420 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 CA6P23280 308 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 CLDN12P56749 244 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 UNC119Q13432 240 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 KIR2DS1Q14954 304 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 OR10J3Q5JRS4 329 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 CD200R1LQ6Q8B3 271 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 TMEM91Q6ZNR0 172 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 ZNF767PQ75MW2 155 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 MDP1Q86V88 176 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 P2RY8Q86VZ1 359 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 WDR31Q8NA23 367 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 DUSP18Q8NEJ0 188 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 C12orf43Q96C57 262 aaKnown RBP5.58□□□□□ -1.52
VPS53-217ENST00000575100 C17orf77Q96MU5 243 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 SDHCQ99643 169 aaPredicted RBP5.58□□□□□ -1.52
VPS53-217ENST00000575100 ABCA2Q9BZC7 2435 aa5.58□□□□□ -1.52
VPS53-217ENST00000575100 TMEM269A0A1B0GVZ9 245 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 CIB4A0PJX0 185 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 H7C2Y5 167 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 CDIPTO14735 213 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 ENSAO43768 121 aaKnown RBP5.57□□□□□ -1.52
VPS53-217ENST00000575100 LMX1BO60663 402 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 GABARAPO95166 117 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 TTRP02766 147 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 ISG15P05161 165 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 OPRM1P35372 400 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 ZNF121P58317 390 aaPredicted RBP5.57□□□□□ -1.52
VPS53-217ENST00000575100 GSG1Q2KHT4 349 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 KRTAP27-1Q3LI81 207 aa5.57□□□□□ -1.52
VPS53-217ENST00000575100 LEMD1Q68G75 181 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms