RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 LIN7CQ9NUP9 197 aaKnown RBP16.4■□□□□ 0.22
VPS53-210ENST00000571456 J3QRK9 145 aa16.39■□□□□ 0.21
VPS53-210ENST00000571456 GNRHRP30968 328 aa16.39■□□□□ 0.21
VPS53-210ENST00000571456 INPP1P49441 399 aa16.39■□□□□ 0.21
VPS53-210ENST00000571456 EIF4EBP1Q13541 118 aaPredicted RBP16.39■□□□□ 0.21
VPS53-210ENST00000571456 HNF4GQ14541 408 aa16.39■□□□□ 0.21
VPS53-210ENST00000571456 FBLN7Q53RD9 439 aa16.39■□□□□ 0.21
VPS53-210ENST00000571456 DRAXINQ8NBI3 349 aaPredicted RBP16.39■□□□□ 0.21
VPS53-210ENST00000571456 NPBQ8NG41 125 aa16.39■□□□□ 0.21
VPS53-210ENST00000571456 OR4C16Q8NGL9 310 aa16.39■□□□□ 0.21
VPS53-210ENST00000571456 OR2T6Q8NHC8 308 aa16.39■□□□□ 0.21
VPS53-210ENST00000571456 OSR1Q8TAX0 266 aaPredicted RBP16.39■□□□□ 0.21
VPS53-210ENST00000571456 ZFAND1Q8TCF1 268 aa16.39■□□□□ 0.21
VPS53-210ENST00000571456 C5orf30Q96GV9 206 aa16.39■□□□□ 0.21
VPS53-210ENST00000571456 SCGB3A2Q96PL1 93 aa16.39■□□□□ 0.21
VPS53-210ENST00000571456 AIFM2Q9BRQ8 373 aa16.39■□□□□ 0.21
VPS53-210ENST00000571456 AKIP1Q9NQ31 210 aa16.39■□□□□ 0.21
VPS53-210ENST00000571456 KIAA1456Q9P272 454 aa16.39■□□□□ 0.21
VPS53-210ENST00000571456 NCBP2LA6PVI3 153 aaKnown RBP16.38■□□□□ 0.21
VPS53-210ENST00000571456 RBFOX2O43251 390 aaKnown RBP eCLIP16.38■□□□□ 0.21
VPS53-210ENST00000571456 KLF9Q13886 244 aaPredicted RBP16.38■□□□□ 0.21
VPS53-210ENST00000571456 TMEM177Q53S58 311 aa16.38■□□□□ 0.21
VPS53-210ENST00000571456 AADACL3Q5VUY0 350 aa16.38■□□□□ 0.21
VPS53-210ENST00000571456 GLDNQ6ZMI3 551 aaPredicted RBP16.38■□□□□ 0.21
VPS53-210ENST00000571456 ZNF818PQ6ZRF7 136 aa16.38■□□□□ 0.21
VPS53-210ENST00000571456 Q6ZSV7 163 aa16.38■□□□□ 0.21
VPS53-210ENST00000571456 MFSD4AQ8N468 514 aa16.38■□□□□ 0.21
VPS53-210ENST00000571456 C5orf56Q8N8D9 126 aa16.38■□□□□ 0.21
VPS53-210ENST00000571456 POC5Q8NA72 575 aa16.38■□□□□ 0.21
VPS53-210ENST00000571456 RSRP1Q9BUV0 290 aa16.38■□□□□ 0.21
VPS53-210ENST00000571456 CCDC32Q9BV29 185 aa16.38■□□□□ 0.21
VPS53-210ENST00000571456 WDR12Q9GZL7 423 aaKnown RBP16.38■□□□□ 0.21
VPS53-210ENST00000571456 FXYD6Q9H0Q3 95 aa16.38■□□□□ 0.21
VPS53-210ENST00000571456 FAM212BQ9NTI7 297 aaPredicted RBP16.38■□□□□ 0.21
VPS53-210ENST00000571456 CLPSL1A2RUU4 121 aa16.37■□□□□ 0.21
VPS53-210ENST00000571456 NAP1L6A6NFF2 107 aa16.37■□□□□ 0.21
VPS53-210ENST00000571456 NBR2O15453 112 aa16.37■□□□□ 0.21
VPS53-210ENST00000571456 NDUFA3O95167 84 aa16.37■□□□□ 0.21
VPS53-210ENST00000571456 CD40LGP29965 261 aa16.37■□□□□ 0.21
VPS53-210ENST00000571456 MMDQ15546 238 aa16.37■□□□□ 0.21
VPS53-210ENST00000571456 OR4S2Q8NH73 311 aa16.37■□□□□ 0.21
VPS53-210ENST00000571456 RASL11BQ9BPW5 248 aa16.37■□□□□ 0.21
VPS53-210ENST00000571456 C7orf50Q9BRJ6 194 aaKnown RBP16.37■□□□□ 0.21
VPS53-210ENST00000571456 PLSCR3Q9NRY6 295 aa16.37■□□□□ 0.21
VPS53-210ENST00000571456 LINC00473A8K010 186 aa16.36■□□□□ 0.21
VPS53-210ENST00000571456 ZNF735P0CB33 412 aa16.36■□□□□ 0.21
VPS53-210ENST00000571456 RELBQ01201 579 aa16.36■□□□□ 0.21
VPS53-210ENST00000571456 SCGB2B2Q4G0G5 96 aa16.36■□□□□ 0.21
VPS53-210ENST00000571456 FAM71E2Q8N5Q1 922 aa16.36■□□□□ 0.21
VPS53-210ENST00000571456 OR4D10Q8NGI6 311 aa16.36■□□□□ 0.21
VPS53-210ENST00000571456 TCTEX1D2Q8WW35 142 aa16.36■□□□□ 0.21
VPS53-210ENST00000571456 CENPXA8MT69 81 aa16.35■□□□□ 0.21
VPS53-210ENST00000571456 B3GALNT1O75752 331 aa16.35■□□□□ 0.21
VPS53-210ENST00000571456 PPP5CP53041 499 aa16.35■□□□□ 0.21
VPS53-210ENST00000571456 RND3P61587 244 aa16.35■□□□□ 0.21
VPS53-210ENST00000571456 RPS16P62249 146 aaKnown RBP16.35■□□□□ 0.21
VPS53-210ENST00000571456 ABCA11PQ4W5N1 156 aa16.35■□□□□ 0.21
VPS53-210ENST00000571456 ZNF57Q68EA5 555 aaPredicted RBP16.35■□□□□ 0.21
VPS53-210ENST00000571456 Q8N9W7 124 aa16.35■□□□□ 0.21
VPS53-210ENST00000571456 CCDC71LQ8N9Z2 235 aa16.35■□□□□ 0.21
VPS53-210ENST00000571456 RRHO14718 337 aa16.34■□□□□ 0.21
VPS53-210ENST00000571456 SHOXO15266 292 aa16.34■□□□□ 0.21
VPS53-210ENST00000571456 FCGR3BO75015 233 aa16.34■□□□□ 0.21
VPS53-210ENST00000571456 PGLYRP1O75594 196 aaPredicted RBP16.34■□□□□ 0.21
VPS53-210ENST00000571456 IGKV1-16P04430 117 aa16.34■□□□□ 0.21
VPS53-210ENST00000571456 AMY1AP04745 511 aa16.34■□□□□ 0.21
VPS53-210ENST00000571456 PGAM2P15259 253 aa16.34■□□□□ 0.21
VPS53-210ENST00000571456 ZNF846Q147U1 533 aa16.34■□□□□ 0.21
VPS53-210ENST00000571456 C5orf64Q2M2E5 130 aa16.34■□□□□ 0.21
VPS53-210ENST00000571456 OR51S1Q8NGJ8 323 aa16.34■□□□□ 0.21
VPS53-210ENST00000571456 LINC01006Q8NI28 216 aa16.34■□□□□ 0.21
VPS53-210ENST00000571456 HARBI1Q96MB7 349 aa16.34■□□□□ 0.21
VPS53-210ENST00000571456 ZNF702PQ9H963 129 aa16.34■□□□□ 0.21
VPS53-210ENST00000571456 MCUBQ9NWR8 336 aa16.34■□□□□ 0.21
VPS53-210ENST00000571456 CREBL2O60519 120 aaPredicted RBP16.33■□□□□ 0.2
VPS53-210ENST00000571456 HRASP01112 189 aa16.33■□□□□ 0.2
VPS53-210ENST00000571456 HLA-DRB1P01911 266 aa16.33■□□□□ 0.2
VPS53-210ENST00000571456 CTSDP07339 412 aaPredicted RBP16.33■□□□□ 0.2
VPS53-210ENST00000571456 F2RL1P55085 397 aa16.33■□□□□ 0.2
VPS53-210ENST00000571456 RPL30P62888 115 aaKnown RBP16.33■□□□□ 0.2
VPS53-210ENST00000571456 BLCAPP62952 87 aa16.33■□□□□ 0.2
VPS53-210ENST00000571456 BAK1Q16611 211 aa16.33■□□□□ 0.2
VPS53-210ENST00000571456 VMA21Q3ZAQ7 101 aa16.33■□□□□ 0.2
VPS53-210ENST00000571456 ARSJQ5FYB0 599 aaPredicted RBP16.33■□□□□ 0.2
VPS53-210ENST00000571456 IDO2Q6ZQW0 420 aa16.33■□□□□ 0.2
VPS53-210ENST00000571456 VSTM2AQ8TAG5 236 aa16.33■□□□□ 0.2
VPS53-210ENST00000571456 SDHCQ99643 169 aaPredicted RBP16.33■□□□□ 0.2
VPS53-210ENST00000571456 SLC25A21Q9BQT8 299 aaPredicted RBP16.33■□□□□ 0.2
VPS53-210ENST00000571456 HRASLSQ9HDD0 168 aa16.33■□□□□ 0.2
VPS53-210ENST00000571456 SLC2A9Q9NRM0 540 aa16.33■□□□□ 0.2
VPS53-210ENST00000571456 ZNF580Q9UK33 172 aa16.33■□□□□ 0.2
VPS53-210ENST00000571456 C14orf166Q9Y224 244 aaKnown RBP16.33■□□□□ 0.2
VPS53-210ENST00000571456 CRYZL1O95825 349 aa16.32■□□□□ 0.2
VPS53-210ENST00000571456 HPRT1P00492 218 aa16.32■□□□□ 0.2
VPS53-210ENST00000571456 IGHG2P01859 326 aa16.32■□□□□ 0.2
VPS53-210ENST00000571456 IL7P13232 177 aa16.32■□□□□ 0.2
VPS53-210ENST00000571456 F2RP25116 425 aa16.32■□□□□ 0.2
VPS53-210ENST00000571456 LIN54Q6MZP7 749 aa16.32■□□□□ 0.2
VPS53-210ENST00000571456 FOXRED2Q8IWF2 684 aa16.32■□□□□ 0.2
VPS53-210ENST00000571456 SPAG16Q8N0X2 631 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms