RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 FBXL15Q9H469 300 aa8.37□□□□□ -1.07
VPS53-207ENST00000570510 TAF9BQ9HBM6 251 aa8.37□□□□□ -1.07
VPS53-207ENST00000570510 C12orf4Q9NQ89 552 aa8.37□□□□□ -1.07
VPS53-207ENST00000570510 ETV7Q9Y603 341 aa8.37□□□□□ -1.07
VPS53-207ENST00000570510 A0A0B4J203 849 aa8.36□□□□□ -1.07
VPS53-207ENST00000570510 AIREO43918 545 aa8.36□□□□□ -1.07
VPS53-207ENST00000570510 GSTP1P09211 210 aaKnown RBP8.36□□□□□ -1.07
VPS53-207ENST00000570510 ZNF134P52741 427 aa8.36□□□□□ -1.07
VPS53-207ENST00000570510 MRPS15P82914 257 aaKnown RBP8.36□□□□□ -1.07
VPS53-207ENST00000570510 NDPQ00604 133 aa8.36□□□□□ -1.07
VPS53-207ENST00000570510 TNFRSF9Q07011 255 aa8.36□□□□□ -1.07
VPS53-207ENST00000570510 CD300EQ496F6 205 aaPredicted RBP8.36□□□□□ -1.07
VPS53-207ENST00000570510 MORN2Q502X0 79 aa8.36□□□□□ -1.07
VPS53-207ENST00000570510 C19orf54Q5BKX5 351 aa8.36□□□□□ -1.07
VPS53-207ENST00000570510 C22orf42Q6IC83 251 aa8.36□□□□□ -1.07
VPS53-207ENST00000570510 LINC00336Q6ZUF6 198 aa8.36□□□□□ -1.07
VPS53-207ENST00000570510 ZNF439Q8NDP4 499 aa8.36□□□□□ -1.07
VPS53-207ENST00000570510 PHLDA1Q8WV24 401 aaPredicted RBP8.36□□□□□ -1.07
VPS53-207ENST00000570510 EDARADDQ8WWZ3 215 aa8.36□□□□□ -1.07
VPS53-207ENST00000570510 SULT4A1Q9BR01 284 aa8.36□□□□□ -1.07
VPS53-207ENST00000570510 GGTLC1Q9BX51 225 aa8.36□□□□□ -1.07
VPS53-207ENST00000570510 MRPL20Q9BYC9 149 aaKnown RBP8.36□□□□□ -1.07
VPS53-207ENST00000570510 OR2S2Q9NQN1 319 aa8.36□□□□□ -1.07
VPS53-207ENST00000570510 PEF1Q9UBV8 284 aaKnown RBP8.36□□□□□ -1.07
VPS53-207ENST00000570510 LOC102724200A0A096LPH7 203 aaPredicted RBP8.35□□□□□ -1.07
VPS53-207ENST00000570510 TMEM272A0A1B0GTI8 110 aa8.35□□□□□ -1.07
VPS53-207ENST00000570510 RRHO14718 337 aa8.35□□□□□ -1.07
VPS53-207ENST00000570510 OR2A4O95047 310 aa8.35□□□□□ -1.07
VPS53-207ENST00000570510 CD36P16671 472 aa8.35□□□□□ -1.07
VPS53-207ENST00000570510 RCC1P18754 421 aaPredicted RBP8.35□□□□□ -1.07
VPS53-207ENST00000570510 DTYMKP23919 212 aa8.35□□□□□ -1.07
VPS53-207ENST00000570510 BMI1P35226 326 aa8.35□□□□□ -1.07
VPS53-207ENST00000570510 TMEM50BP56557 158 aa8.35□□□□□ -1.07
VPS53-207ENST00000570510 C6orf201Q7Z4U5 140 aa8.35□□□□□ -1.07
VPS53-207ENST00000570510 POC5Q8NA72 575 aa8.35□□□□□ -1.07
VPS53-207ENST00000570510 OR10R2Q8NGX6 335 aa8.35□□□□□ -1.07
VPS53-207ENST00000570510 OR4K15Q8NH41 348 aa8.35□□□□□ -1.07
VPS53-207ENST00000570510 RAB3CQ96E17 227 aa8.35□□□□□ -1.07
VPS53-207ENST00000570510 FAAP24Q9BTP7 215 aa8.35□□□□□ -1.07
VPS53-207ENST00000570510 DCSTAMPQ9H295 470 aa8.35□□□□□ -1.07
VPS53-207ENST00000570510 PLA2G2EQ9NZK7 142 aa8.35□□□□□ -1.07
VPS53-207ENST00000570510 ZNF581Q9P0T4 197 aa8.35□□□□□ -1.07
VPS53-207ENST00000570510 PIPOXQ9P0Z9 390 aa8.35□□□□□ -1.07
VPS53-207ENST00000570510 UBE2QL1A1L167 161 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 H7C2Y5 167 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 RAB27BO00194 218 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 FCN1O00602 326 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 NDUFA3O95167 84 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 IFNA4P05014 189 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 CTXN2P0C2S0 81 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 AADACP22760 399 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 ZBTB25P24278 435 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 DYRK1AQ13627 763 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 OR10K2Q6IF99 312 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 SFXN4Q6P4A7 337 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 OR5T1Q8NG75 326 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 OR4A4PQ8NGN8 299 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 GRPEL2Q8TAA5 225 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 SNAPC3Q92966 411 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 CMTM3Q96MX0 182 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 RNF5Q99942 180 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 CMSS1Q9BQ75 279 aaKnown RBP8.34□□□□□ -1.07
VPS53-207ENST00000570510 ABHD14AQ9BUJ0 271 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 PECRQ9BY49 303 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 Q9N2K0 584 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 GAB2Q9UQC2 676 aa8.34□□□□□ -1.07
VPS53-207ENST00000570510 A0A0A6YYD4 124 aa8.33□□□□□ -1.08
VPS53-207ENST00000570510 ZNF785A8K8V0 405 aa8.33□□□□□ -1.08
VPS53-207ENST00000570510 TRDCB7Z8K6 153 aa8.33□□□□□ -1.08
VPS53-207ENST00000570510 H3BUA1 57 aa8.33□□□□□ -1.08
VPS53-207ENST00000570510 MFNGO00587 321 aa8.33□□□□□ -1.08
VPS53-207ENST00000570510 RAB29O14966 203 aa8.33□□□□□ -1.08
VPS53-207ENST00000570510 SOCS1O15524 211 aa8.33□□□□□ -1.08
VPS53-207ENST00000570510 XRCC3O43542 346 aa8.33□□□□□ -1.08
VPS53-207ENST00000570510 SPRY2O43597 315 aa8.33□□□□□ -1.08
VPS53-207ENST00000570510 CD3GP09693 182 aa8.33□□□□□ -1.08
VPS53-207ENST00000570510 EGR2P11161 476 aaPredicted RBP8.33□□□□□ -1.08
VPS53-207ENST00000570510 HIST1H1DP16402 221 aaKnown RBP8.33□□□□□ -1.08
VPS53-207ENST00000570510 LGALS7P47929 136 aa8.33□□□□□ -1.08
VPS53-207ENST00000570510 EWSR1Q01844 656 aaKnown RBP eCLIP8.33□□□□□ -1.08
VPS53-207ENST00000570510 TAGLNQ01995 201 aaKnown RBP8.33□□□□□ -1.08
VPS53-207ENST00000570510 ZNF562Q6V9R5 426 aa8.33□□□□□ -1.08
VPS53-207ENST00000570510 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.33□□□□□ -1.08
VPS53-207ENST00000570510 OR2AK2Q8NG84 335 aa8.33□□□□□ -1.08
VPS53-207ENST00000570510 RNF183Q96D59 192 aa8.33□□□□□ -1.08
VPS53-207ENST00000570510 ARHGAP5-AS1Q96IT6 56 aa8.33□□□□□ -1.08
VPS53-207ENST00000570510 NICN1Q9BSH3 213 aa8.33□□□□□ -1.08
VPS53-207ENST00000570510 CHMP1AQ9HD42 196 aaPredicted RBP8.33□□□□□ -1.08
VPS53-207ENST00000570510 METTL1Q9UBP6 276 aaKnown RBP8.33□□□□□ -1.08
VPS53-207ENST00000570510 ADAM30Q9UKF2 790 aa8.33□□□□□ -1.08
VPS53-207ENST00000570510 RBBP9O75884 186 aa8.32□□□□□ -1.08
VPS53-207ENST00000570510 MC5RP33032 325 aa8.32□□□□□ -1.08
VPS53-207ENST00000570510 SDC2P34741 201 aa8.32□□□□□ -1.08
VPS53-207ENST00000570510 APOC4P55056 127 aa8.32□□□□□ -1.08
VPS53-207ENST00000570510 OR10A3P58181 314 aa8.32□□□□□ -1.08
VPS53-207ENST00000570510 HLA-DRB3P79483 266 aa8.32□□□□□ -1.08
VPS53-207ENST00000570510 NEDD8Q15843 81 aa8.32□□□□□ -1.08
VPS53-207ENST00000570510 PLAC9Q5JTB6 97 aa8.32□□□□□ -1.08
VPS53-207ENST00000570510 HES5Q5TA89 166 aa8.32□□□□□ -1.08
VPS53-207ENST00000570510 FAM131AQ6UXB0 335 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms