RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 BDKRB2P30411 391 aa13.15□□□□□ -0.3
CLK3-227ENST00000570296 SOX2P48431 317 aa13.15□□□□□ -0.3
CLK3-227ENST00000570296 LINC00205P59089 165 aa13.15□□□□□ -0.3
CLK3-227ENST00000570296 ZNF585BQ52M93 769 aa13.15□□□□□ -0.3
CLK3-227ENST00000570296 Q6ZTC4 211 aa13.15□□□□□ -0.3
CLK3-227ENST00000570296 C10orf67Q8IYJ2 551 aa13.15□□□□□ -0.3
CLK3-227ENST00000570296 TTC9CQ8N5M4 171 aa13.15□□□□□ -0.3
CLK3-227ENST00000570296 OR8J1Q8NGP2 316 aa13.15□□□□□ -0.3
CLK3-227ENST00000570296 OR13C5Q8NGS8 318 aa13.15□□□□□ -0.3
CLK3-227ENST00000570296 EDARADDQ8WWZ3 215 aa13.15□□□□□ -0.3
CLK3-227ENST00000570296 MRPL48Q96GC5 212 aaKnown RBP13.15□□□□□ -0.3
CLK3-227ENST00000570296 HARBI1Q96MB7 349 aa13.15□□□□□ -0.3
CLK3-227ENST00000570296 CCDC140Q96MF4 163 aa13.15□□□□□ -0.3
CLK3-227ENST00000570296 ISG20L2Q9H9L3 353 aaKnown RBP13.15□□□□□ -0.3
CLK3-227ENST00000570296 SLC35D1Q9NTN3 355 aa13.15□□□□□ -0.3
CLK3-227ENST00000570296 TNXAQ16473 311 aa13.14□□□□□ -0.31
CLK3-227ENST00000570296 C1orf134Q5TEV5 83 aa13.14□□□□□ -0.31
CLK3-227ENST00000570296 SIGIRRQ6IA17 410 aa13.14□□□□□ -0.31
CLK3-227ENST00000570296 CENPSQ8N2Z9 138 aa13.14□□□□□ -0.31
CLK3-227ENST00000570296 MYCBPQ99417 103 aaPredicted RBP13.14□□□□□ -0.31
CLK3-227ENST00000570296 C11orf54Q9H0W9 315 aaPredicted RBP13.14□□□□□ -0.31
CLK3-227ENST00000570296 ERICH4A6NGS2 130 aa13.13□□□□□ -0.31
CLK3-227ENST00000570296 OR4C46A6NHA9 309 aa13.13□□□□□ -0.31
CLK3-227ENST00000570296 PDCD6O75340 191 aa13.13□□□□□ -0.31
CLK3-227ENST00000570296 ELLP55199 621 aaPredicted RBP13.13□□□□□ -0.31
CLK3-227ENST00000570296 MRPL28Q13084 256 aaKnown RBP13.13□□□□□ -0.31
CLK3-227ENST00000570296 MED21Q13503 144 aa13.13□□□□□ -0.31
CLK3-227ENST00000570296 PRSS8Q16651 343 aa13.13□□□□□ -0.31
CLK3-227ENST00000570296 CLEC19AQ6UXS0 136 aa13.13□□□□□ -0.31
CLK3-227ENST00000570296 SLC25A42Q86VD7 318 aa13.13□□□□□ -0.31
CLK3-227ENST00000570296 SYS1Q8N2H4 156 aa13.13□□□□□ -0.31
CLK3-227ENST00000570296 ACBD7Q8N6N7 88 aa13.13□□□□□ -0.31
CLK3-227ENST00000570296 CYYR1Q96J86 154 aa13.13□□□□□ -0.31
CLK3-227ENST00000570296 ZNF184Q99676 751 aaPredicted RBP13.13□□□□□ -0.31
CLK3-227ENST00000570296 ZNF221Q9UK13 617 aa13.13□□□□□ -0.31
CLK3-227ENST00000570296 IGLV2-18A0A075B6J9 118 aa13.12□□□□□ -0.31
CLK3-227ENST00000570296 TCRBV3S1A0A5B6 114 aa13.12□□□□□ -0.31
CLK3-227ENST00000570296 BAG2O95816 211 aa13.12□□□□□ -0.31
CLK3-227ENST00000570296 MYOD1P15172 320 aa13.12□□□□□ -0.31
CLK3-227ENST00000570296 LAMTOR1Q6IAA8 161 aa13.12□□□□□ -0.31
CLK3-227ENST00000570296 UNQ9165/PRO28630Q6UXU0 137 aa13.12□□□□□ -0.31
CLK3-227ENST00000570296 Q6ZRM9 215 aa13.12□□□□□ -0.31
CLK3-227ENST00000570296 Q8NAQ8 132 aa13.12□□□□□ -0.31
CLK3-227ENST00000570296 Q96M66 194 aa13.12□□□□□ -0.31
CLK3-227ENST00000570296 SPIN2AQ99865 258 aa13.12□□□□□ -0.31
CLK3-227ENST00000570296 SPIN2BQ9BPZ2 258 aa13.12□□□□□ -0.31
CLK3-227ENST00000570296 NDUFAF3Q9BU61 184 aa13.12□□□□□ -0.31
CLK3-227ENST00000570296 SELENOIQ9C0D9 397 aa13.12□□□□□ -0.31
CLK3-227ENST00000570296 UFC1Q9Y3C8 167 aa13.12□□□□□ -0.31
CLK3-227ENST00000570296 IFNA10P01566 189 aa13.11□□□□□ -0.31
CLK3-227ENST00000570296 MGMTP16455 207 aa13.11□□□□□ -0.31
CLK3-227ENST00000570296 TMEM187Q14656 261 aa13.11□□□□□ -0.31
CLK3-227ENST00000570296 GLIPR1L1Q6UWM5 242 aa13.11□□□□□ -0.31
CLK3-227ENST00000570296 TEX45Q8NA69 505 aa13.11□□□□□ -0.31
CLK3-227ENST00000570296 GPR148Q8TDV2 347 aa13.11□□□□□ -0.31
CLK3-227ENST00000570296 PTX4Q96A99 478 aa13.11□□□□□ -0.31
CLK3-227ENST00000570296 BANF2Q9H503 90 aa13.11□□□□□ -0.31
CLK3-227ENST00000570296 ZNF257Q9Y2Q1 563 aa13.11□□□□□ -0.31
CLK3-227ENST00000570296 SRRM4A7MD48 611 aaKnown RBP13.1□□□□□ -0.31
CLK3-227ENST00000570296 IGHV3-23P01764 117 aa13.1□□□□□ -0.31
CLK3-227ENST00000570296 CD74P04233 296 aa13.1□□□□□ -0.31
CLK3-227ENST00000570296 INAFM2P0DMQ5 153 aa13.1□□□□□ -0.31
CLK3-227ENST00000570296 CEACAM6P40199 344 aa13.1□□□□□ -0.31
CLK3-227ENST00000570296 CBX3Q13185 183 aa13.1□□□□□ -0.31
CLK3-227ENST00000570296 VMA21Q3ZAQ7 101 aa13.1□□□□□ -0.31
CLK3-227ENST00000570296 ZDHHC13Q8IUH4 622 aa13.1□□□□□ -0.31
CLK3-227ENST00000570296 APRG1Q8IVJ8 170 aa13.1□□□□□ -0.31
CLK3-227ENST00000570296 SVOPQ8N4V2 548 aa13.1□□□□□ -0.31
CLK3-227ENST00000570296 ACOT12Q8WYK0 555 aa13.1□□□□□ -0.31
CLK3-227ENST00000570296 AGRNO00468 2067 aa13.09□□□□□ -0.31
CLK3-227ENST00000570296 EPM2AB3EWF7 344 aa13.09□□□□□ -0.31
CLK3-227ENST00000570296 E9PI62 339 aa13.09□□□□□ -0.31
CLK3-227ENST00000570296 M0R1X1 148 aa13.09□□□□□ -0.31
CLK3-227ENST00000570296 FKBP6O75344 327 aa13.09□□□□□ -0.31
CLK3-227ENST00000570296 GSTT2P0CG29 244 aa13.09□□□□□ -0.31
CLK3-227ENST00000570296 GSTT2BP0CG30 244 aa13.09□□□□□ -0.31
CLK3-227ENST00000570296 ZBTB25P24278 435 aa13.09□□□□□ -0.31
CLK3-227ENST00000570296 PSMB6P28072 239 aa13.09□□□□□ -0.31
CLK3-227ENST00000570296 UBE2KP61086 200 aa13.09□□□□□ -0.31
CLK3-227ENST00000570296 KDM4DQ6B0I6 523 aa13.09□□□□□ -0.31
CLK3-227ENST00000570296 MOB1BQ7L9L4 216 aa13.09□□□□□ -0.31
CLK3-227ENST00000570296 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.09□□□□□ -0.31
CLK3-227ENST00000570296 MUL1Q969V5 352 aa13.09□□□□□ -0.31
CLK3-227ENST00000570296 EEF1AKMT3Q96AZ1 226 aa13.09□□□□□ -0.31
CLK3-227ENST00000570296 AP4S1Q9Y587 144 aa13.09□□□□□ -0.31
CLK3-227ENST00000570296 CA1P00915 261 aaPredicted RBP13.08□□□□□ -0.32
CLK3-227ENST00000570296 FCGR1AP12314 374 aa13.08□□□□□ -0.32
CLK3-227ENST00000570296 SNRPGP62308 76 aaKnown RBP13.08□□□□□ -0.32
CLK3-227ENST00000570296 TAGLNQ01995 201 aaKnown RBP13.08□□□□□ -0.32
CLK3-227ENST00000570296 TNP2Q05952 138 aa13.08□□□□□ -0.32
CLK3-227ENST00000570296 ZNF880Q6PDB4 577 aa13.08□□□□□ -0.32
CLK3-227ENST00000570296 OR1A1Q9P1Q5 309 aa13.08□□□□□ -0.32
CLK3-227ENST00000570296 DEFB131BA0A096LNP1 70 aa13.07□□□□□ -0.32
CLK3-227ENST00000570296 CREBL2O60519 120 aaPredicted RBP13.07□□□□□ -0.32
CLK3-227ENST00000570296 CRTAPO75718 401 aaPredicted RBP13.07□□□□□ -0.32
CLK3-227ENST00000570296 ACTL6BO94805 426 aa13.07□□□□□ -0.32
CLK3-227ENST00000570296 NAPSAO96009 420 aa13.07□□□□□ -0.32
CLK3-227ENST00000570296 IFNA21P01568 189 aa13.07□□□□□ -0.32
CLK3-227ENST00000570296 IFNA17P01571 189 aa13.07□□□□□ -0.32
CLK3-227ENST00000570296 RBMY1A1P0DJD3 496 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms