RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 NOL3O60936 208 aaKnown RBP10.88□□□□□ -0.67
CLN3-235ENST00000568497 APELAP0DMC3 54 aa10.88□□□□□ -0.67
CLN3-235ENST00000568497 RPA2P15927 270 aa10.88□□□□□ -0.67
CLN3-235ENST00000568497 DUTP33316 252 aaKnown RBP10.88□□□□□ -0.67
CLN3-235ENST00000568497 HRH1P35367 487 aa10.88□□□□□ -0.67
CLN3-235ENST00000568497 CDK10Q15131 360 aa10.88□□□□□ -0.67
CLN3-235ENST00000568497 PSG5Q15238 335 aa10.88□□□□□ -0.67
CLN3-235ENST00000568497 C5orf64Q2M2E5 130 aa10.88□□□□□ -0.67
CLN3-235ENST00000568497 FAAP20Q6NZ36 180 aa10.88□□□□□ -0.67
CLN3-235ENST00000568497 VKORC1L1Q8N0U8 176 aa10.88□□□□□ -0.67
CLN3-235ENST00000568497 AP3S1Q92572 193 aa10.88□□□□□ -0.67
CLN3-235ENST00000568497 DUX3Q96PT4 197 aa10.88□□□□□ -0.67
CLN3-235ENST00000568497 SLC5A7Q9GZV3 580 aa10.88□□□□□ -0.67
CLN3-235ENST00000568497 FXYD6Q9H0Q3 95 aa10.88□□□□□ -0.67
CLN3-235ENST00000568497 PALMDQ9NP74 551 aa10.88□□□□□ -0.67
CLN3-235ENST00000568497 METTL1Q9UBP6 276 aaKnown RBP10.88□□□□□ -0.67
CLN3-235ENST00000568497 ANAPC10Q9UM13 185 aa10.88□□□□□ -0.67
CLN3-235ENST00000568497 RBMX2Q9Y388 322 aaKnown RBP10.88□□□□□ -0.67
CLN3-235ENST00000568497 IGHV7-81A0A0B4J1V7 117 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 PSMB11A5LHX3 300 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 ATP6V0E1O15342 81 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 FGF16O43320 207 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 FCGR3BO75015 233 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 DUS4LO95620 317 aaKnown RBP10.87□□□□□ -0.67
CLN3-235ENST00000568497 CRYZL1O95825 349 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 PPYP01298 95 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 IGLV2-23P01705 113 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 IGHG2P01859 326 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 MYOD1P15172 320 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 SOX6P35712 828 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 BRWD1-AS2P59051 145 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 GNB1P62873 340 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 DEFA5Q01523 94 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 PLGLAQ15195 96 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 ECSCRQ19T08 205 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 FAM71F2Q6NXP2 309 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 ZNF645Q8N7E2 425 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 OR5AP2Q8NGF4 316 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 OR4D10Q8NGI6 311 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 OR5H2Q8NGV7 314 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 MCFD2Q8NI22 146 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 ABHD5Q8WTS1 349 aa10.87□□□□□ -0.67
CLN3-235ENST00000568497 ZNF2Q9BSG1 426 aaPredicted RBP10.87□□□□□ -0.67
CLN3-235ENST00000568497 TINAGL1Q9GZM7 467 aaPredicted RBP10.87□□□□□ -0.67
CLN3-235ENST00000568497 LIN7CQ9NUP9 197 aaKnown RBP10.87□□□□□ -0.67
CLN3-235ENST00000568497 CCDC59Q9P031 241 aaKnown RBP10.87□□□□□ -0.67
CLN3-235ENST00000568497 DNAH1Q9P2D7 4330 aa10.86□□□□□ -0.67
CLN3-235ENST00000568497 TCRBV4S1A1TA0A5B7 111 aa10.86□□□□□ -0.67
CLN3-235ENST00000568497 DPPA5A6NC42 116 aa10.86□□□□□ -0.67
CLN3-235ENST00000568497 OR5H14A6NHG9 310 aa10.86□□□□□ -0.67
CLN3-235ENST00000568497 RRHO14718 337 aa10.86□□□□□ -0.67
CLN3-235ENST00000568497 CA2P00918 260 aa10.86□□□□□ -0.67
CLN3-235ENST00000568497 APOA2P02652 100 aa10.86□□□□□ -0.67
CLN3-235ENST00000568497 EGFEM1PQ0D2K5 195 aa10.86□□□□□ -0.67
CLN3-235ENST00000568497 EIF4EBP1Q13541 118 aaPredicted RBP10.86□□□□□ -0.67
CLN3-235ENST00000568497 ZNF818PQ6ZRF7 136 aa10.86□□□□□ -0.67
CLN3-235ENST00000568497 STPG2Q8N412 459 aa10.86□□□□□ -0.67
CLN3-235ENST00000568497 NPBQ8NG41 125 aa10.86□□□□□ -0.67
CLN3-235ENST00000568497 TCTEX1D2Q8WW35 142 aa10.86□□□□□ -0.67
CLN3-235ENST00000568497 DDB2Q92466 427 aa10.86□□□□□ -0.67
CLN3-235ENST00000568497 M0QZK8 103 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 SULT1C2O00338 296 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 ARPC1BO15143 372 aaKnown RBP10.85□□□□□ -0.67
CLN3-235ENST00000568497 SHOXO15266 292 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 RAMP3O60896 148 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 TMEM127O75204 238 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 RPLP1P05386 114 aaKnown RBP10.85□□□□□ -0.67
CLN3-235ENST00000568497 CTXN2P0C2S0 81 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 EGR2P11161 476 aaPredicted RBP10.85□□□□□ -0.67
CLN3-235ENST00000568497 NAT1P18440 290 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 TNFSF8P32971 234 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 CBX5P45973 191 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 THBS3P49746 956 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 CX3CL1P78423 397 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 SSBP2P81877 361 aaPredicted RBP10.85□□□□□ -0.67
CLN3-235ENST00000568497 MRGPRG-AS1Q2M3A8 158 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 PHLDA2Q53GA4 152 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 C10orf55Q5SWW7 151 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 ZNF660Q6AZW8 331 aaPredicted RBP10.85□□□□□ -0.67
CLN3-235ENST00000568497 LIN54Q6MZP7 749 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 KCTD9Q7L273 389 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 OR51H1Q8NH63 302 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 GRPEL2Q8TAA5 225 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 FLYWCH2Q96CP2 140 aaKnown RBP10.85□□□□□ -0.67
CLN3-235ENST00000568497 DIRAS2Q96HU8 199 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 HARBI1Q96MB7 349 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 KLK15Q9H2R5 256 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 KIAA1456Q9P272 454 aa10.85□□□□□ -0.67
CLN3-235ENST00000568497 RSL24D1Q9UHA3 163 aaKnown RBP10.85□□□□□ -0.67
CLN3-235ENST00000568497 NDUFA3O95167 84 aa10.84□□□□□ -0.67
CLN3-235ENST00000568497 CD3DP04234 171 aa10.84□□□□□ -0.67
CLN3-235ENST00000568497 PI3P19957 117 aa10.84□□□□□ -0.67
CLN3-235ENST00000568497 HERV-K104P61576 105 aa10.84□□□□□ -0.67
CLN3-235ENST00000568497 CD83Q01151 205 aa10.84□□□□□ -0.67
CLN3-235ENST00000568497 DYRK1AQ13627 763 aa10.84□□□□□ -0.67
CLN3-235ENST00000568497 IL18Q14116 193 aa10.84□□□□□ -0.67
CLN3-235ENST00000568497 DEFB136Q30KP8 78 aa10.84□□□□□ -0.67
CLN3-235ENST00000568497 C19orf35Q6ZS72 473 aa10.84□□□□□ -0.67
CLN3-235ENST00000568497 SSX9Q7RTT3 188 aa10.84□□□□□ -0.67
CLN3-235ENST00000568497 OVCH2Q7RTZ1 564 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms