RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 SSX7Q7RTT5 188 aa16.73■□□□□ 0.27
CLN3-230ENST00000568076 VKORC1L1Q8N0U8 176 aa16.73■□□□□ 0.27
CLN3-230ENST00000568076 CLDND2Q8NHS1 167 aa16.73■□□□□ 0.27
CLN3-230ENST00000568076 TRAV1-1A0A0B4J248 108 aa16.72■□□□□ 0.27
CLN3-230ENST00000568076 RBFOX2O43251 390 aaKnown RBP eCLIP16.72■□□□□ 0.27
CLN3-230ENST00000568076 MMP23AO75900 390 aa16.72■□□□□ 0.27
CLN3-230ENST00000568076 ICAM4Q14773 271 aa16.72■□□□□ 0.27
CLN3-230ENST00000568076 AARDQ4LEZ3 155 aa16.72■□□□□ 0.27
CLN3-230ENST00000568076 GAB2Q9UQC2 676 aa16.72■□□□□ 0.27
CLN3-230ENST00000568076 PCNX1Q96RV3 2341 aa16.72■□□□□ 0.27
CLN3-230ENST00000568076 PTPRQQ9UMZ3 2332 aa16.72■□□□□ 0.27
CLN3-230ENST00000568076 CEBPZOSA8MTT3 80 aa16.71■□□□□ 0.27
CLN3-230ENST00000568076 HBE1P02100 147 aa16.71■□□□□ 0.27
CLN3-230ENST00000568076 TNFRSF1AP19438 455 aa16.71■□□□□ 0.27
CLN3-230ENST00000568076 RAB7AP51149 207 aa16.71■□□□□ 0.27
CLN3-230ENST00000568076 SERF2P84101 59 aa16.71■□□□□ 0.27
CLN3-230ENST00000568076 ZNF439Q8NDP4 499 aa16.71■□□□□ 0.27
CLN3-230ENST00000568076 RND1Q92730 232 aa16.71■□□□□ 0.27
CLN3-230ENST00000568076 CIB3Q96Q77 187 aaPredicted RBP16.71■□□□□ 0.27
CLN3-230ENST00000568076 DIRC2Q96SL1 478 aa16.71■□□□□ 0.27
CLN3-230ENST00000568076 ZNF251Q9BRH9 671 aa16.71■□□□□ 0.27
CLN3-230ENST00000568076 C20orf24Q9BUV8 137 aa16.71■□□□□ 0.27
CLN3-230ENST00000568076 TANC2Q9HCD6 1990 aa16.71■□□□□ 0.27
CLN3-230ENST00000568076 SAA2-SAA4A0A096LPE2 208 aa16.71■□□□□ 0.27
CLN3-230ENST00000568076 SCAF4O95104 1147 aaKnown RBP16.71■□□□□ 0.27
CLN3-230ENST00000568076 SAA2P0DJI9 122 aaPredicted RBP16.71■□□□□ 0.27
CLN3-230ENST00000568076 ZNF506Q5JVG8 444 aa16.71■□□□□ 0.27
CLN3-230ENST00000568076 RBMXL1Q96E39 390 aaKnown RBP16.71■□□□□ 0.27
CLN3-230ENST00000568076 S1PR3Q99500 378 aa16.71■□□□□ 0.27
CLN3-230ENST00000568076 LINC00574Q9H8X3 128 aa16.71■□□□□ 0.27
CLN3-230ENST00000568076 RPS10P5Q9NQ39 176 aa16.71■□□□□ 0.27
CLN3-230ENST00000568076 IDI2-AS1Q9NZ38 188 aa16.71■□□□□ 0.27
CLN3-230ENST00000568076 SNRNP70P08621 437 aaKnown RBP16.7■□□□□ 0.26
CLN3-230ENST00000568076 SRP19P09132 144 aaKnown RBP16.7■□□□□ 0.26
CLN3-230ENST00000568076 FBP1P09467 338 aa16.7■□□□□ 0.26
CLN3-230ENST00000568076 PLA2G5P39877 138 aa16.7■□□□□ 0.26
CLN3-230ENST00000568076 PRAMEF5Q5TYX0 476 aa16.7■□□□□ 0.26
CLN3-230ENST00000568076 KDF1Q8NAX2 398 aaPredicted RBP16.7■□□□□ 0.26
CLN3-230ENST00000568076 CORO2AQ92828 525 aa16.7■□□□□ 0.26
CLN3-230ENST00000568076 RCC1LQ96I51 464 aaKnown RBP16.7■□□□□ 0.26
CLN3-230ENST00000568076 RAB9BQ9NP90 201 aa16.7■□□□□ 0.26
CLN3-230ENST00000568076 PRELID3BQ9Y3B1 194 aa16.7■□□□□ 0.26
CLN3-230ENST00000568076 KALRNO60229 2985 aa16.7■□□□□ 0.26
CLN3-230ENST00000568076 DOCK11Q5JSL3 2073 aa16.7■□□□□ 0.26
CLN3-230ENST00000568076 TRAV3A0A0B4J244 114 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 C7orf77A4D0Y5 90 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 ZNF729A6NN14 1252 aaPredicted RBP16.69■□□□□ 0.26
CLN3-230ENST00000568076 FAM90A9PA6NNJ1 464 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 TMPRSS2O15393 492 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 ELLP55199 621 aaPredicted RBP16.69■□□□□ 0.26
CLN3-230ENST00000568076 TLE1Q04724 770 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 RBPJQ06330 500 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 HNF4GQ14541 408 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 ATP6V1FQ16864 119 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 SOHLH1Q5JUK2 328 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 OR10P1Q8NGE3 313 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 RXFP4Q8TDU9 374 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 MBD3L1Q8WWY6 194 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 TMEM147Q9BVK8 224 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 C15orf62A8K5M9 175 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 COLCA2A8K830 154 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 M0R036 132 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 FCN3O75636 299 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 TMEM41BQ5BJD5 291 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 SSX8Q7RTT4 187 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 CENPVQ7Z7K6 275 aaPredicted RBP16.69■□□□□ 0.26
CLN3-230ENST00000568076 DMRTC2Q8IXT2 367 aaPredicted RBP16.69■□□□□ 0.26
CLN3-230ENST00000568076 CLCC1Q96S66 551 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 VKORC1Q9BQB6 163 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 SMCO4Q9NRQ5 59 aa16.69■□□□□ 0.26
CLN3-230ENST00000568076 TLN1Q9Y490 2541 aaKnown RBP16.68■□□□□ 0.26
CLN3-230ENST00000568076 SHISA9B4DS77 424 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 H7C2Y5 167 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 IGKV1D-33P01593 117 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 IGKV1-33P01594 117 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 ERVFRD-1P60508 538 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 RAB2AP61019 212 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 RELBQ01201 579 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 LCN15Q6UWW0 184 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 ZNF436-AS1Q8NC38 126 aaPredicted RBP16.68■□□□□ 0.26
CLN3-230ENST00000568076 PINX1Q96BK5 328 aaKnown RBP16.68■□□□□ 0.26
CLN3-230ENST00000568076 SAP30LQ9HAJ7 183 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 TIMM9Q9Y5J7 89 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 IFNA17P01571 189 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 HSPB1P04792 205 aaKnown RBP16.68■□□□□ 0.26
CLN3-230ENST00000568076 NQO2P16083 231 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 GNG10P50151 68 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 FGF8P55075 233 aaPredicted RBP16.68■□□□□ 0.26
CLN3-230ENST00000568076 TMPRSS3P57727 454 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 NHLH1Q02575 133 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 VWC2Q2TAL6 325 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 LYG1Q8N1E2 194 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 ZNF383Q8NA42 475 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 NEUROG1Q92886 237 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 TMEM140Q9NV12 185 aa16.68■□□□□ 0.26
CLN3-230ENST00000568076 HCFC1P51610 2035 aa16.67■□□□□ 0.26
CLN3-230ENST00000568076 DAOP14920 347 aa16.67■□□□□ 0.26
CLN3-230ENST00000568076 NDUFB7P17568 137 aa16.67■□□□□ 0.26
CLN3-230ENST00000568076 KIR2DS2P43631 304 aa16.67■□□□□ 0.26
CLN3-230ENST00000568076 GNB2P62879 340 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms