RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, human

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-223	ENST00000566472	OR10G7	Q8NGN6	311 aa		5.18	□□□□□ -1.58
CLN3-223	ENST00000566472	OR4A16	Q8NH70	328 aa		5.18	□□□□□ -1.58
CLN3-223	ENST00000566472	RFESD	Q8TAC1	157 aa		5.18	□□□□□ -1.58
CLN3-223	ENST00000566472	LHX4	Q969G2	390 aa		5.18	□□□□□ -1.58
CLN3-223	ENST00000566472	GAFA1	Q96PS6	74 aa		5.18	□□□□□ -1.58
CLN3-223	ENST00000566472	QTRT1	Q9BXR0	403 aa	Known RBP	5.18	□□□□□ -1.58
CLN3-223	ENST00000566472	NPCDR1	Q9BY65	106 aa		5.18	□□□□□ -1.58
CLN3-223	ENST00000566472	ESRP2	Q9H6T0	727 aa	Known RBP	5.18	□□□□□ -1.58
CLN3-223	ENST00000566472	VSIR	Q9H7M9	311 aa		5.18	□□□□□ -1.58
CLN3-223	ENST00000566472	IDI2-AS1	Q9NZ38	188 aa		5.18	□□□□□ -1.58
CLN3-223	ENST00000566472	METTL1	Q9UBP6	276 aa	Known RBP	5.18	□□□□□ -1.58
CLN3-223	ENST00000566472	NAT8	Q9UHE5	227 aa		5.18	□□□□□ -1.58
CLN3-223	ENST00000566472	FOXA2	Q9Y261	457 aa	Predicted RBP	5.18	□□□□□ -1.58
CLN3-223	ENST00000566472	SSUH2	Q9Y2M2	353 aa		5.18	□□□□□ -1.58
CLN3-223	ENST00000566472	AHCTF1	Q8WYP5	2266 aa		5.18	□□□□□ -1.58
CLN3-223	ENST00000566472	MED13	Q9UHV7	2174 aa		5.18	□□□□□ -1.58
CLN3-223	ENST00000566472	CACNA1G	O43497	2377 aa		5.18	□□□□□ -1.58
CLN3-223	ENST00000566472	IGHV3OR15-7	A0A075B7D8	119 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	hADV38S2	A0JD32	116 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	ZNF98	A6NK75	572 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	C15orf61	A6NNL5	157 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	DEFB108A	A8MXU0	73 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	CLDN34	H7C241	214 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	AP4M1	O00189	453 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	PROP1	O75360	226 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	RBMXL2	O75526	392 aa	Known RBP	5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	KBTBD11	O94819	623 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	IGKV1D-33	P01593	117 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	IGKV1-33	P01594	117 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	IGHV2-5	P01817	119 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	DAO	P14920	347 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	TNFRSF1A	P19438	455 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	OPRK1	P41145	380 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	RPL35	P42766	123 aa	Known RBP	5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	CDC34	P49427	236 aa	Predicted RBP	5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	MEOX2	P50222	304 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	AKR1D1	P51857	326 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	EDDM3B	P56851	147 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	RAB11A	P62491	216 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	RELB	Q01201	579 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	MEF2B	Q02080	365 aa	Predicted RBP	5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	MEF2C	Q06413	473 aa	Predicted RBP	5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	FFAR4	Q5NUL3	377 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	FAM53A	Q6NSI3	398 aa	Predicted RBP	5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	ZNF788	Q6ZQV5	615 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	SSX7	Q7RTT5	188 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	C1orf87	Q8N0U7	546 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	RPP25L	Q8N5L8	163 aa	Known RBP	5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	FAM24B	Q8N5W8	94 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	ZNF439	Q8NDP4	499 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	C2CD4C	Q8TF44	421 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	ZDHHC16	Q969W1	377 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	ISOC2	Q96AB3	205 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	TXNDC17	Q9BRA2	123 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	DCTN5	Q9BTE1	182 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	SDF2L1	Q9HCN8	221 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	GCM1	Q9NP62	436 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	TMEM140	Q9NV12	185 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	TCF19	Q9Y242	345 aa		5.17	□□□□□ -1.58
CLN3-223	ENST00000566472	RTTN	Q86VV8	2226 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	ZNF407	Q9C0G0	2248 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	TRBV24-1	A0A075B6N3	115 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	hCG_1809904	A0A1W2PP81	198 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472		A0A1W2PR64	198 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472		A0A1W2PRV1	198 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	ZNF727	A8MUV8	499 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	VSTM5	A8MXK1	200 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	PRSS46	E5RG02	174 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	C16orf97	H3BN30	126 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	GFRA3	O60609	400 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	HRAS	P01112	189 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	OPN1MW	P04001	364 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	S100A9	P06702	114 aa	Known RBP	5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	OPN1MW2	P0DN77	364 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	OPN1MW3	P0DN78	364 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	CD1B	P29016	333 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	CCKAR	P32238	428 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	CEBPG	P53567	150 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	FGF8	P55075	233 aa	Predicted RBP	5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	HSPE1	P61604	102 aa	Known RBP	5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	MRPS11	P82912	194 aa	Known RBP	5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	HOXA4	Q00056	320 aa	Predicted RBP	5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	TFF3	Q07654	80 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	ELOB	Q15370	118 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	LTC4S	Q16873	150 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	RPL39P5	Q59GN2	51 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	CT45A1	Q5HYN5	189 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	WDR25	Q64LD2	544 aa	Predicted RBP	5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	FAM71F2	Q6NXP2	309 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	VHLL	Q6RSH7	139 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	SLC25A48	Q6ZT89	311 aa	Known RBP	5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	TCF23	Q7RTU1	214 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	MED12L	Q86YW9	2145 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	ZFP82	Q8N141	532 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	RPRML	Q8N4K4	120 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	C8orf31	Q8N9H6	132 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	ZNRF1	Q8ND25	227 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	CT45A3	Q8NHU0	189 aa		5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	NEIL1	Q96FI4	390 aa	Predicted RBP	5.16	□□□□□ -1.58
CLN3-223	ENST00000566472	GAL3ST2	Q9H3Q3	398 aa		5.16	□□□□□ -1.58

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