RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 CCDC190Q86UF4 302 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 LHFPL1Q86WI0 220 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 TMEM17Q86X19 198 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 VKORC1L1Q8N0U8 176 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 STPG2Q8N412 459 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 MFSD4AQ8N468 514 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 OR5AU1Q8NGC0 362 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 CASTOR1Q8WTX7 329 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 MOB3AQ96BX8 217 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 DIRAS2Q96HU8 199 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 CLCC1Q96S66 551 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 FAM103A1Q9BTL3 118 aaKnown RBP7.22□□□□□ -1.25
VPS35-206ENST00000565228 KLK15Q9H2R5 256 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 GHITMQ9H3K2 345 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 SCPEP1Q9HB40 452 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 IFT46Q9NQC8 304 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 TAS2R8Q9NYW2 309 aa7.22□□□□□ -1.25
VPS35-206ENST00000565228 TRAV3A0A0B4J244 114 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 CCDC160A6NGH7 325 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 A6NHS1 94 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 CGB1A6NKQ9 187 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 H7C2Y5 167 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 M0QZK8 103 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 ZNF701M0R085 212 aaPredicted RBP7.21□□□□□ -1.26
VPS35-206ENST00000565228 SLC25A17O43808 307 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 FCGR3BO75015 233 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 RBMXL2O75526 392 aaKnown RBP7.21□□□□□ -1.26
VPS35-206ENST00000565228 CRYZL1O95825 349 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 CA2P00918 260 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 HLA-DRB1P01911 266 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 IGF1P05019 195 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 MC5RP33032 325 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 RCVRNP35243 200 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 SOX6P35712 828 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 THBS3P49746 956 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 RPS16P62249 146 aaKnown RBP7.21□□□□□ -1.26
VPS35-206ENST00000565228 CX3CL1P78423 397 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 ZNF585BQ52M93 769 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 VAX1Q5SQQ9 334 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 ETV3LQ6ZN32 361 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 PDPNQ86YL7 162 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 OR5H2Q8NGV7 314 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 SMIM4Q8WVI0 70 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 TRIM63Q969Q1 353 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 RASL11BQ9BPW5 248 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 SLC5A7Q9GZV3 580 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 OR51J1Q9H342 316 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 RBM7Q9Y580 266 aaKnown RBP7.21□□□□□ -1.26
VPS35-206ENST00000565228 NUBP2Q9Y5Y2 271 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 WSB1Q9Y6I7 421 aa7.21□□□□□ -1.26
VPS35-206ENST00000565228 NOTCH1P46531 2555 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 SMIM31A0A1B0GVY4 71 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 A0A1W2PRX2 142 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 PSMB11A5LHX3 300 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 GABARAPH6UMI1 98 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 CTDSPLO15194 276 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 FBXO24O75426 580 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 PGLYRP1O75594 196 aaPredicted RBP7.2□□□□□ -1.26
VPS35-206ENST00000565228 IGKV1-39P01597 117 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 IGKV1D-39P04432 117 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 RPLP1P05386 114 aaKnown RBP7.2□□□□□ -1.26
VPS35-206ENST00000565228 IL6RP08887 468 aaPredicted RBP7.2□□□□□ -1.26
VPS35-206ENST00000565228 SAA1P0DJI8 122 aaPredicted RBP7.2□□□□□ -1.26
VPS35-206ENST00000565228 CRIP2P52943 208 aaPredicted RBP7.2□□□□□ -1.26
VPS35-206ENST00000565228 IL18Q14116 193 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 NSUN5P1Q3KNT7 163 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 C10orf55Q5SWW7 151 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 LIN54Q6MZP7 749 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 C19orf35Q6ZS72 473 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 OR8H1Q8NGG4 311 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 OR6Q1Q8NGQ2 317 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 OR13C8Q8NGS7 320 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 FLYWCH2Q96CP2 140 aaKnown RBP7.2□□□□□ -1.26
VPS35-206ENST00000565228 AKR1E2Q96JD6 320 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 HARBI1Q96MB7 349 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 RSRP1Q9BUV0 290 aa7.2□□□□□ -1.26
VPS35-206ENST00000565228 METTL1Q9UBP6 276 aaKnown RBP7.2□□□□□ -1.26
VPS35-206ENST00000565228 GSTZ1O43708 216 aaPredicted RBP7.19□□□□□ -1.26
VPS35-206ENST00000565228 RBBP9O75884 186 aa7.19□□□□□ -1.26
VPS35-206ENST00000565228 TPPPO94811 219 aa7.19□□□□□ -1.26
VPS35-206ENST00000565228 PI3P19957 117 aa7.19□□□□□ -1.26
VPS35-206ENST00000565228 TAS2R46P59540 309 aa7.19□□□□□ -1.26
VPS35-206ENST00000565228 DEFA5Q01523 94 aa7.19□□□□□ -1.26
VPS35-206ENST00000565228 MSMO1Q15800 293 aa7.19□□□□□ -1.26
VPS35-206ENST00000565228 PYHIN1Q6K0P9 492 aa7.19□□□□□ -1.26
VPS35-206ENST00000565228 KCTD9Q7L273 389 aa7.19□□□□□ -1.26
VPS35-206ENST00000565228 CENPVQ7Z7K6 275 aaPredicted RBP7.19□□□□□ -1.26
VPS35-206ENST00000565228 PUSL1Q8N0Z8 303 aaKnown RBP7.19□□□□□ -1.26
VPS35-206ENST00000565228 RNF152Q8N8N0 203 aa7.19□□□□□ -1.26
VPS35-206ENST00000565228 TMEM229BQ8NBD8 167 aa7.19□□□□□ -1.26
VPS35-206ENST00000565228 MINDY2Q8NBR6 621 aa7.19□□□□□ -1.26
VPS35-206ENST00000565228 OR4C16Q8NGL9 310 aa7.19□□□□□ -1.26
VPS35-206ENST00000565228 FAM110DQ8TAY7 271 aaPredicted RBP7.19□□□□□ -1.26
VPS35-206ENST00000565228 MYOZ3Q8TDC0 251 aa7.19□□□□□ -1.26
VPS35-206ENST00000565228 TCTEX1D2Q8WW35 142 aa7.19□□□□□ -1.26
VPS35-206ENST00000565228 DGCR14Q96DF8 476 aaKnown RBP7.19□□□□□ -1.26
VPS35-206ENST00000565228 DUX3Q96PT4 197 aa7.19□□□□□ -1.26
VPS35-206ENST00000565228 RNF5Q99942 180 aa7.19□□□□□ -1.26
VPS35-206ENST00000565228 SRRQ9GZT4 340 aa7.19□□□□□ -1.26
VPS35-206ENST00000565228 MMP27Q9H306 513 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms