RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 MRPS11P82912 194 aaKnown RBP13.87□□□□□ -0.19
LDLR-206ENST00000557958 CLINT1Q14677 625 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 MIDNQ504T8 468 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 RPL39P5Q59GN2 51 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 PRAMEF5Q5TYX0 476 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 ATRAIDQ6UW56 229 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 ZNF439Q8NDP4 499 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 OR5C1Q8NGR4 320 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 R3HDM4Q96D70 268 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 CIB3Q96Q77 187 aaPredicted RBP13.87□□□□□ -0.19
LDLR-206ENST00000557958 WFDC1Q9HC57 220 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 PSENENQ9NZ42 101 aa13.87□□□□□ -0.19
LDLR-206ENST00000557958 DVL1O14640 695 aa13.86□□□□□ -0.19
LDLR-206ENST00000557958 TXNL1O43396 289 aa13.86□□□□□ -0.19
LDLR-206ENST00000557958 IGHV3-7P01780 117 aa13.86□□□□□ -0.19
LDLR-206ENST00000557958 SOD3P08294 240 aa13.86□□□□□ -0.19
LDLR-206ENST00000557958 PAX9P55771 341 aa13.86□□□□□ -0.19
LDLR-206ENST00000557958 HBG1P69891 147 aa13.86□□□□□ -0.19
LDLR-206ENST00000557958 HBG2P69892 147 aa13.86□□□□□ -0.19
LDLR-206ENST00000557958 SLC25A48Q6ZT89 311 aaKnown RBP13.86□□□□□ -0.19
LDLR-206ENST00000557958 LYG1Q8N1E2 194 aa13.86□□□□□ -0.19
LDLR-206ENST00000557958 CLRN3Q8NCR9 226 aa13.86□□□□□ -0.19
LDLR-206ENST00000557958 BPIFCQ8NFQ6 507 aa13.86□□□□□ -0.19
LDLR-206ENST00000557958 MARC2Q969Z3 335 aa13.86□□□□□ -0.19
LDLR-206ENST00000557958 BSCL2Q96G97 398 aaPredicted RBP13.86□□□□□ -0.19
LDLR-206ENST00000557958 KLF2Q9Y5W3 355 aaPredicted RBP13.86□□□□□ -0.19
LDLR-206ENST00000557958 ANKHD1Q8IWZ3 2542 aaKnown RBP13.86□□□□□ -0.19
LDLR-206ENST00000557958 TANC2Q9HCD6 1990 aa13.85□□□□□ -0.19
LDLR-206ENST00000557958 SAA2-SAA4A0A096LPE2 208 aa13.85□□□□□ -0.19
LDLR-206ENST00000557958 TRBV23-1A0A0A0MS06 115 aa13.85□□□□□ -0.19
LDLR-206ENST00000557958 SLC31A2O15432 143 aa13.85□□□□□ -0.19
LDLR-206ENST00000557958 CST7O76096 145 aa13.85□□□□□ -0.19
LDLR-206ENST00000557958 SAA2P0DJI9 122 aaPredicted RBP13.85□□□□□ -0.19
LDLR-206ENST00000557958 SPP1P10451 314 aa13.85□□□□□ -0.19
LDLR-206ENST00000557958 LEAP2Q969E1 77 aa13.85□□□□□ -0.19
LDLR-206ENST00000557958 ATP5SQ99766 215 aa13.85□□□□□ -0.19
LDLR-206ENST00000557958 NKX6-2Q9C056 277 aaPredicted RBP13.85□□□□□ -0.19
LDLR-206ENST00000557958 KMT2BQ9UMN6 2715 aaPredicted RBP13.85□□□□□ -0.19
LDLR-206ENST00000557958 PROP1O75360 226 aa13.84□□□□□ -0.19
LDLR-206ENST00000557958 PLA2G2AP14555 144 aa13.84□□□□□ -0.19
LDLR-206ENST00000557958 NQO2P16083 231 aa13.84□□□□□ -0.19
LDLR-206ENST00000557958 GNG10P50151 68 aa13.84□□□□□ -0.19
LDLR-206ENST00000557958 TMEM200BQ69YZ2 307 aa13.84□□□□□ -0.19
LDLR-206ENST00000557958 LYPD2Q6UXB3 125 aa13.84□□□□□ -0.19
LDLR-206ENST00000557958 IL34Q6ZMJ4 242 aa13.84□□□□□ -0.19
LDLR-206ENST00000557958 TMEM217Q8N7C4 229 aa13.84□□□□□ -0.19
LDLR-206ENST00000557958 GNPNAT1Q96EK6 184 aaPredicted RBP13.84□□□□□ -0.19
LDLR-206ENST00000557958 GPR37O15354 613 aa13.84□□□□□ -0.19
LDLR-206ENST00000557958 SCAF4O95104 1147 aaKnown RBP13.84□□□□□ -0.19
LDLR-206ENST00000557958 IFNA5P01569 189 aa13.84□□□□□ -0.19
LDLR-206ENST00000557958 IAPPP10997 89 aa13.84□□□□□ -0.19
LDLR-206ENST00000557958 DYNLT3P51808 116 aa13.84□□□□□ -0.19
LDLR-206ENST00000557958 HSD17B11Q8NBQ5 300 aa13.84□□□□□ -0.19
LDLR-206ENST00000557958 PARP11Q9NR21 331 aa13.84□□□□□ -0.19
LDLR-206ENST00000557958 MMP26Q9NRE1 261 aa13.84□□□□□ -0.19
LDLR-206ENST00000557958 STRAPQ9Y3F4 350 aaKnown RBP13.84□□□□□ -0.19
LDLR-206ENST00000557958 LYNX1G3V0Z9 82 aa13.83□□□□□ -0.2
LDLR-206ENST00000557958 H3BP45 60 aa13.83□□□□□ -0.2
LDLR-206ENST00000557958 J3QKU1 62 aa13.83□□□□□ -0.2
LDLR-206ENST00000557958 LYNX1P0DP58 116 aa13.83□□□□□ -0.2
LDLR-206ENST00000557958 SP5Q6BEB4 398 aaPredicted RBP13.83□□□□□ -0.2
LDLR-206ENST00000557958 NEU4Q8WWR8 484 aaPredicted RBP13.83□□□□□ -0.2
LDLR-206ENST00000557958 DDB2Q92466 427 aa13.83□□□□□ -0.2
LDLR-206ENST00000557958 TIMD4Q96H15 378 aa13.83□□□□□ -0.2
LDLR-206ENST00000557958 TSNAXQ99598 290 aaKnown RBP13.83□□□□□ -0.2
LDLR-206ENST00000557958 RBKSQ9H477 322 aa13.83□□□□□ -0.2
LDLR-206ENST00000557958 CTSZQ9UBR2 303 aa13.83□□□□□ -0.2
LDLR-206ENST00000557958 PKDREJQ9NTG1 2253 aa13.83□□□□□ -0.2
LDLR-206ENST00000557958 DSCAML1Q8TD84 2053 aa13.83□□□□□ -0.2
LDLR-206ENST00000557958 A0A1W2PPE3 182 aa13.82□□□□□ -0.2
LDLR-206ENST00000557958 A0A1W2PPH5 198 aa13.82□□□□□ -0.2
LDLR-206ENST00000557958 F2RL1P55085 397 aa13.82□□□□□ -0.2
LDLR-206ENST00000557958 DEFA5Q01523 94 aa13.82□□□□□ -0.2
LDLR-206ENST00000557958 SLC25A24Q6NUK1 477 aa13.82□□□□□ -0.2
LDLR-206ENST00000557958 C8orf31Q8N9H6 132 aa13.82□□□□□ -0.2
LDLR-206ENST00000557958 OR4A16Q8NH70 328 aa13.82□□□□□ -0.2
LDLR-206ENST00000557958 CLCC1Q96S66 551 aa13.82□□□□□ -0.2
LDLR-206ENST00000557958 COL12A1Q99715 3063 aa13.82□□□□□ -0.2
LDLR-206ENST00000557958 TMEM218A2RU14 115 aa13.82□□□□□ -0.2
LDLR-206ENST00000557958 UMAD1C9J7I0 102 aa13.82□□□□□ -0.2
LDLR-206ENST00000557958 MMP23AO75900 390 aa13.82□□□□□ -0.2
LDLR-206ENST00000557958 LY6HO94772 140 aa13.82□□□□□ -0.2
LDLR-206ENST00000557958 DANCRP0C864 163 aa13.82□□□□□ -0.2
LDLR-206ENST00000557958 FLI1Q01543 452 aaPredicted RBP13.82□□□□□ -0.2
LDLR-206ENST00000557958 TMEM267Q0VDI3 215 aaPredicted RBP13.82□□□□□ -0.2
LDLR-206ENST00000557958 RTL8BQ17RB0 113 aa13.82□□□□□ -0.2
LDLR-206ENST00000557958 SPANXN5Q5MJ07 72 aa13.82□□□□□ -0.2
LDLR-206ENST00000557958 DHRS7BQ6IAN0 325 aaPredicted RBP13.82□□□□□ -0.2
LDLR-206ENST00000557958 ODF3L1Q8IXM7 274 aa13.82□□□□□ -0.2
LDLR-206ENST00000557958 DTD1Q8TEA8 209 aa13.82□□□□□ -0.2
LDLR-206ENST00000557958 CEBPZOSA8MTT3 80 aa13.81□□□□□ -0.2
LDLR-206ENST00000557958 NUPL2O15504 423 aaKnown RBP13.81□□□□□ -0.2
LDLR-206ENST00000557958 HRASP01112 189 aa13.81□□□□□ -0.2
LDLR-206ENST00000557958 IGHV2-70P01814 119 aa13.81□□□□□ -0.2
LDLR-206ENST00000557958 PRH1P02810 166 aa13.81□□□□□ -0.2
LDLR-206ENST00000557958 H2AFB1P0C5Y9 115 aa13.81□□□□□ -0.2
LDLR-206ENST00000557958 COX6B1P14854 86 aa13.81□□□□□ -0.2
LDLR-206ENST00000557958 CCL3L1P16619 93 aa13.81□□□□□ -0.2
LDLR-206ENST00000557958 CDKN1AP38936 164 aa13.81□□□□□ -0.2
LDLR-206ENST00000557958 LINC00205P59089 165 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms