RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 K7EIL1 84 aa12.45□□□□□ -0.42
CCDC88C-209ENST00000554872 IGLV2-14P01704 120 aa12.45□□□□□ -0.42
CCDC88C-209ENST00000554872 UBE2KP61086 200 aa12.45□□□□□ -0.42
CCDC88C-209ENST00000554872 ZNF616Q08AN1 781 aa12.45□□□□□ -0.42
CCDC88C-209ENST00000554872 DCTN2Q13561 401 aaKnown RBP12.45□□□□□ -0.42
CCDC88C-209ENST00000554872 ACTBL2Q562R1 376 aa12.45□□□□□ -0.42
CCDC88C-209ENST00000554872 C9orf66Q5T8R8 295 aa12.45□□□□□ -0.42
CCDC88C-209ENST00000554872 ASPHD1Q5U4P2 390 aa12.45□□□□□ -0.42
CCDC88C-209ENST00000554872 TEX45Q8NA69 505 aa12.45□□□□□ -0.42
CCDC88C-209ENST00000554872 BVESQ8NE79 360 aa12.45□□□□□ -0.42
CCDC88C-209ENST00000554872 OR11H1Q8NG94 326 aa12.45□□□□□ -0.42
CCDC88C-209ENST00000554872 AUNIPQ9H7T9 357 aa12.45□□□□□ -0.42
CCDC88C-209ENST00000554872 DIABLOQ9NR28 239 aa12.45□□□□□ -0.42
CCDC88C-209ENST00000554872 LINC00473A8K010 186 aa12.44□□□□□ -0.42
CCDC88C-209ENST00000554872 ARPC1BO15143 372 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-209ENST00000554872 RAMP3O60896 148 aa12.44□□□□□ -0.42
CCDC88C-209ENST00000554872 LGALS1P09382 135 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-209ENST00000554872 CBX5P45973 191 aa12.44□□□□□ -0.42
CCDC88C-209ENST00000554872 INSL3P51460 131 aa12.44□□□□□ -0.42
CCDC88C-209ENST00000554872 EIF4EBP1Q13541 118 aaPredicted RBP12.44□□□□□ -0.42
CCDC88C-209ENST00000554872 FXYD3Q14802 87 aa12.44□□□□□ -0.42
CCDC88C-209ENST00000554872 UNQ5815/PRO19632Q6UWF5 114 aa12.44□□□□□ -0.42
CCDC88C-209ENST00000554872 HOGA1Q86XE5 327 aa12.44□□□□□ -0.42
CCDC88C-209ENST00000554872 LFNGQ8NES3 379 aa12.44□□□□□ -0.42
CCDC88C-209ENST00000554872 OR1N2Q8NGR9 330 aa12.44□□□□□ -0.42
CCDC88C-209ENST00000554872 KCTD12Q96CX2 325 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-209ENST00000554872 RBMX2Q9Y388 322 aaKnown RBP12.44□□□□□ -0.42
CCDC88C-209ENST00000554872 TRAV18A0A075B6X5 111 aa12.43□□□□□ -0.42
CCDC88C-209ENST00000554872 SRRM4A7MD48 611 aaKnown RBP12.43□□□□□ -0.42
CCDC88C-209ENST00000554872 SHOXO15266 292 aa12.43□□□□□ -0.42
CCDC88C-209ENST00000554872 XRCC3O43542 346 aa12.43□□□□□ -0.42
CCDC88C-209ENST00000554872 NFYAP23511 347 aaPredicted RBP12.43□□□□□ -0.42
CCDC88C-209ENST00000554872 CD40LGP29965 261 aa12.43□□□□□ -0.42
CCDC88C-209ENST00000554872 HOXD3P31249 432 aaPredicted RBP12.43□□□□□ -0.42
CCDC88C-209ENST00000554872 GNB1P62873 340 aa12.43□□□□□ -0.42
CCDC88C-209ENST00000554872 MRGPRG-AS1Q2M3A8 158 aa12.43□□□□□ -0.42
CCDC88C-209ENST00000554872 VMA21Q3ZAQ7 101 aa12.43□□□□□ -0.42
CCDC88C-209ENST00000554872 BEST4Q8NFU0 473 aa12.43□□□□□ -0.42
CCDC88C-209ENST00000554872 ABHD5Q8WTS1 349 aa12.43□□□□□ -0.42
CCDC88C-209ENST00000554872 HSD17B10Q99714 261 aaKnown RBP12.43□□□□□ -0.42
CCDC88C-209ENST00000554872 FAM103A1Q9BTL3 118 aaKnown RBP12.43□□□□□ -0.42
CCDC88C-209ENST00000554872 IGKV1D-13A0A0B4J2D9 117 aa12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 WI2-2373I1.2A0A1W2PRP0 233 aa12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 CREBL2O60519 120 aaPredicted RBP12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 CRYZL1O95825 349 aa12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 IGKV1-13P0DP09 117 aa12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 RPS19P39019 145 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 RAB25P57735 213 aa12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 DGCR2P98153 550 aa12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 UBE2NLQ5JXB2 153 aa12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 ZNF66Q6ZN08 573 aa12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 KCTD9Q7L273 389 aa12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 POC5Q8NA72 575 aa12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 SLC25A46Q96AG3 418 aa12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 RHOVQ96L33 236 aa12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 CLCC1Q96S66 551 aa12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 ANAPC10Q9UM13 185 aa12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 MRPS7Q9Y2R9 242 aaKnown RBP12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 PRELID3BQ9Y3B1 194 aa12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 A3GALT2U3KPV4 340 aa12.42□□□□□ -0.42
CCDC88C-209ENST00000554872 SEC14L6B5MCN3 397 aa12.41□□□□□ -0.42
CCDC88C-209ENST00000554872 PJVKQ0ZLH3 352 aa12.41□□□□□ -0.42
CCDC88C-209ENST00000554872 PRSS8Q16651 343 aa12.41□□□□□ -0.42
CCDC88C-209ENST00000554872 GRPEL2Q8TAA5 225 aa12.41□□□□□ -0.42
CCDC88C-209ENST00000554872 S100A16Q96FQ6 103 aaKnown RBP12.41□□□□□ -0.42
CCDC88C-209ENST00000554872 CMTM3Q96MX0 182 aa12.41□□□□□ -0.42
CCDC88C-209ENST00000554872 SCOCQ9UIL1 159 aa12.41□□□□□ -0.42
CCDC88C-209ENST00000554872 LINC01619G3V211 115 aa12.4□□□□□ -0.42
CCDC88C-209ENST00000554872 CNIH1O95406 144 aa12.4□□□□□ -0.42
CCDC88C-209ENST00000554872 AADACP22760 399 aa12.4□□□□□ -0.42
CCDC88C-209ENST00000554872 TGFBR1P36897 503 aa12.4□□□□□ -0.42
CCDC88C-209ENST00000554872 TPPP2P59282 170 aa12.4□□□□□ -0.42
CCDC88C-209ENST00000554872 ARPC4P59998 168 aa12.4□□□□□ -0.42
CCDC88C-209ENST00000554872 CDK10Q15131 360 aa12.4□□□□□ -0.42
CCDC88C-209ENST00000554872 GVQW1Q8N7I0 195 aa12.4□□□□□ -0.42
CCDC88C-209ENST00000554872 ZBTB34Q8NCN2 500 aa12.4□□□□□ -0.42
CCDC88C-209ENST00000554872 OR5AP2Q8NGF4 316 aa12.4□□□□□ -0.42
CCDC88C-209ENST00000554872 OR13F1Q8NGS4 319 aa12.4□□□□□ -0.42
CCDC88C-209ENST00000554872 OR4S2Q8NH73 311 aa12.4□□□□□ -0.42
CCDC88C-209ENST00000554872 SNAPC3Q92966 411 aa12.4□□□□□ -0.42
CCDC88C-209ENST00000554872 FUNDC2Q9BWH2 189 aa12.4□□□□□ -0.42
CCDC88C-209ENST00000554872 A0A0G2JLM5 398 aa12.39□□□□□ -0.43
CCDC88C-209ENST00000554872 PPYP01298 95 aa12.39□□□□□ -0.43
CCDC88C-209ENST00000554872 HSPB1P04792 205 aaKnown RBP12.39□□□□□ -0.43
CCDC88C-209ENST00000554872 KIR2DS2P43631 304 aa12.39□□□□□ -0.43
CCDC88C-209ENST00000554872 RPL30P62888 115 aaKnown RBP12.39□□□□□ -0.43
CCDC88C-209ENST00000554872 VSTM2AQ8TAG5 236 aa12.39□□□□□ -0.43
CCDC88C-209ENST00000554872 GIMAP1Q8WWP7 306 aa12.39□□□□□ -0.43
CCDC88C-209ENST00000554872 TINAGL1Q9GZM7 467 aaPredicted RBP12.39□□□□□ -0.43
CCDC88C-209ENST00000554872 COL7A1Q02388 2944 aa12.39□□□□□ -0.43
CCDC88C-209ENST00000554872 OVOL1O14753 267 aa12.38□□□□□ -0.43
CCDC88C-209ENST00000554872 RBFOX2O43251 390 aaKnown RBP eCLIP12.38□□□□□ -0.43
CCDC88C-209ENST00000554872 FCGR3BO75015 233 aa12.38□□□□□ -0.43
CCDC88C-209ENST00000554872 TRGV3P03979 118 aa12.38□□□□□ -0.43
CCDC88C-209ENST00000554872 SAA1P0DJI8 122 aaPredicted RBP12.38□□□□□ -0.43
CCDC88C-209ENST00000554872 NAT1P18440 290 aa12.38□□□□□ -0.43
CCDC88C-209ENST00000554872 FCGR2CP31995 323 aa12.38□□□□□ -0.43
CCDC88C-209ENST00000554872 ZNF429Q86V71 674 aa12.38□□□□□ -0.43
CCDC88C-209ENST00000554872 MMD2Q8IY49 270 aa12.38□□□□□ -0.43
CCDC88C-209ENST00000554872 SAMD12Q8N8I0 201 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms