RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 GPR141Q7Z602 305 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 PPP1R27Q86WC6 154 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 COMMD1Q8N668 190 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 ZNF645Q8N7E2 425 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 LINC00482Q8N8I6 264 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 MINDY2Q8NBR6 621 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 GRPEL2Q8TAA5 225 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 SECTM1Q8WVN6 248 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 KCTD12Q96CX2 325 aaKnown RBP9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 HARBI1Q96MB7 349 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 RNF5Q99942 180 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 GON7Q9BXV9 100 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 GNB4Q9HAV0 340 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 CCL28Q9NRJ3 127 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 ZFP57Q9NU63 452 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 RBMX2Q9Y388 322 aaKnown RBP9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 NUBP2Q9Y5Y2 271 aa9.03□□□□□ -0.96
CCDC88C-208ENST00000554165 A0A1W2PN81 502 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 SHOXO15266 292 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 TNFSF12O43508 249 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 FCGR3BO75015 233 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 IGLV1-40P01703 118 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 PMP2P02689 132 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 CHRNA7P36544 502 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 RORCP51449 518 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 FXYD4P59646 89 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 TAGLNQ01995 201 aaKnown RBP9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 FXYD3Q14802 87 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 RTL8BQ17RB0 113 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 PDLIM3Q53GG5 364 aaPredicted RBP9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 TMEM177Q53S58 311 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 KPRPQ5T749 579 aaPredicted RBP9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 ZNF562Q6V9R5 426 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 SNX29P2Q8IUI4 249 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 LYSMD2Q8IV50 215 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 VKORC1L1Q8N0U8 176 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 LFNGQ8NES3 379 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 MYOZ3Q8TDC0 251 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 P2RX4Q99571 388 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 ALX4Q9H161 411 aaPredicted RBP9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 IFT46Q9NQC8 304 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 TAS2R8Q9NYW2 309 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 ZNF580Q9UK33 172 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 ANAPC10Q9UM13 185 aa9.02□□□□□ -0.97
CCDC88C-208ENST00000554165 CCL24O00175 119 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 SPDEFO95238 335 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 PPYP01298 95 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 APOA1P02647 267 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 APELAP0DMC3 54 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 PRSS3P35030 304 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 CBX5P45973 191 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 CDX1P47902 265 aaPredicted RBP9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 LGALS7P47929 136 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 CRIP2P52943 208 aaPredicted RBP9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 CDK10Q15131 360 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 RNASE12Q5GAN4 147 aaKnown RBP9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 FOXB2Q5VYV0 432 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 UNQ5815/PRO19632Q6UWF5 114 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 KCTD9Q7L273 389 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 CLVS1Q8IUQ0 354 aaPredicted RBP9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 ZNF491Q8N8L2 437 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 OR5AP2Q8NGF4 316 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 DNAH3Q8TD57 4116 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 TCTEX1D2Q8WW35 142 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 ARPC1AQ92747 370 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 ADTRPQ96IZ2 230 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 MS4A10Q96PG2 267 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 SLC5A7Q9GZV3 580 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 NECAP2Q9NVZ3 263 aa9.01□□□□□ -0.97
CCDC88C-208ENST00000554165 FAM25AB3EWG3 89 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 FAM25CB3EWG5 89 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 FAM25GB3EWG6 89 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 CNIH1O95406 144 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 ZNF182P17025 639 aaPredicted RBP9□□□□□ -0.97
CCDC88C-208ENST00000554165 NAT1P18440 290 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 HLA-DMAP28067 261 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 HOXD3P31249 432 aaPredicted RBP9□□□□□ -0.97
CCDC88C-208ENST00000554165 MYCNOSP40205 109 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 RAB9AP51151 201 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 RAB25P57735 213 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 KRTAP10-11P60412 298 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 DEFA5Q01523 94 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 ACTBL2Q562R1 376 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 ASPHD1Q5U4P2 390 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 TMEM65Q6PI78 240 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 TMEM17Q86X19 198 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 MFSD4AQ8N468 514 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 OR5T1Q8NG75 326 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 GPX8Q8TED1 209 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 C4orf3Q8WVX3 66 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 GIMAP1Q8WWP7 306 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 ACOT12Q8WYK0 555 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 DCUN1D5Q9BTE7 237 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 MIXL1Q9H2W2 232 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 EHFQ9NZC4 300 aa9□□□□□ -0.97
CCDC88C-208ENST00000554165 FOXA2Q9Y261 457 aaPredicted RBP9□□□□□ -0.97
CCDC88C-208ENST00000554165 I3L521 148 aa8.99□□□□□ -0.97
CCDC88C-208ENST00000554165 CTDSP2O14595 271 aa8.99□□□□□ -0.97
CCDC88C-208ENST00000554165 RAMP3O60896 148 aa8.99□□□□□ -0.97
CCDC88C-208ENST00000554165 IGHV3-11P01762 117 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms