RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 SLC5A7Q9GZV3 580 aa11.32□□□□□ -0.6
CCDC88C-207ENST00000554051 CCDC160A6NGH7 325 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 ADARB2-AS1A8MUL3 147 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 RBFOX2O43251 390 aaKnown RBP eCLIP11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 SLC25A17O43808 307 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 CRYZL1O95825 349 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 PF4P02776 101 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 UBE2KP61086 200 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 CX3CL1P78423 397 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 TCTEX1D4Q5JR98 221 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 LPCAT3Q6P1A2 487 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 DHRS11Q6UWP2 260 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 PPP1R27Q86WC6 154 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 TMEM17Q86X19 198 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 CMTM1Q8IZ96 169 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 TEX45Q8NA69 505 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 POC5Q8NA72 575 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 OR6F1Q8NGZ6 308 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 CD300LFQ8TDQ1 290 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 ABHD5Q8WTS1 349 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 TCTEX1D2Q8WW35 142 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 ARPC1AQ92747 370 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 MOB3AQ96BX8 217 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 C5orf30Q96GV9 206 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 RITA1Q96K30 269 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 TMEM68Q96MH6 324 aa11.31□□□□□ -0.6
CCDC88C-207ENST00000554051 LINC00473A8K010 186 aa11.3□□□□□ -0.6
CCDC88C-207ENST00000554051 CA2P00918 260 aa11.3□□□□□ -0.6
CCDC88C-207ENST00000554051 IGLV2-14P01704 120 aa11.3□□□□□ -0.6
CCDC88C-207ENST00000554051 CD40LGP29965 261 aa11.3□□□□□ -0.6
CCDC88C-207ENST00000554051 HRH1P35367 487 aa11.3□□□□□ -0.6
CCDC88C-207ENST00000554051 FXYD4P59646 89 aa11.3□□□□□ -0.6
CCDC88C-207ENST00000554051 VAX1Q5SQQ9 334 aa11.3□□□□□ -0.6
CCDC88C-207ENST00000554051 ZNF329Q86UD4 541 aa11.3□□□□□ -0.6
CCDC88C-207ENST00000554051 LAX1Q8IWV1 398 aa11.3□□□□□ -0.6
CCDC88C-207ENST00000554051 OR5M8Q8NGP6 311 aa11.3□□□□□ -0.6
CCDC88C-207ENST00000554051 FAM110DQ8TAY7 271 aaPredicted RBP11.3□□□□□ -0.6
CCDC88C-207ENST00000554051 FCAMRQ8WWV6 532 aa11.3□□□□□ -0.6
CCDC88C-207ENST00000554051 ZNF2Q9BSG1 426 aaPredicted RBP11.3□□□□□ -0.6
CCDC88C-207ENST00000554051 C6orf62Q9GZU0 229 aaPredicted RBP11.3□□□□□ -0.6
CCDC88C-207ENST00000554051 RSL24D1Q9UHA3 163 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-207ENST00000554051 A3GALT2U3KPV4 340 aa11.3□□□□□ -0.6
CCDC88C-207ENST00000554051 A0A1W2PRX2 142 aa11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 NUDT19A8MXV4 375 aa11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 GABARAPH6UMI1 98 aa11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 CTDSPLO15194 276 aa11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 FCGR3BO75015 233 aa11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 HRASP01112 189 aa11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 IGLV2-23P01705 113 aa11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 PSMB8P28062 276 aa11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 TSPAN5P62079 268 aa11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 EIF4EBP1Q13541 118 aaPredicted RBP11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 AKIRIN2Q53H80 203 aa11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 RNASE10Q5GAN6 216 aaKnown RBP11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 TMEM65Q6PI78 240 aa11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 MFSD4AQ8N468 514 aa11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 ARRDC1Q8N5I2 433 aa11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 DCUN1D5Q9BTE7 237 aa11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 TAS2R8Q9NYW2 309 aa11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 LINC00527Q9UJ94 153 aa11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 FOXA2Q9Y261 457 aaPredicted RBP11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 CEPT1Q9Y6K0 416 aa11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 MGAM2Q2M2H8 2515 aa11.29□□□□□ -0.6
CCDC88C-207ENST00000554051 LINC01548A6NM66 108 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 H3BUA1 57 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 J3QRK9 145 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 ACTL6BO94805 426 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 CNIH1O95406 144 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 DUS4LO95620 317 aaKnown RBP11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 PMP2P02689 132 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 IFNA6P05013 189 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 FGF2P09038 288 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 HLA-DMAP28067 261 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 PPIFP30405 207 aaKnown RBP11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 TAS2R19P59542 299 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 ECSCRQ19T08 205 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 C10orf99Q6UWK7 81 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 ZNF695Q8IW36 515 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 MINDY2Q8NBR6 621 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 KLHL30-AS1Q8NEE0 82 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 MCFD2Q8NI22 146 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 SMIM4Q8WVI0 70 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 DIRAS2Q96HU8 199 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 GPR61Q9BZJ8 451 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 SLIRPQ9GZT3 109 aaKnown RBP11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 CCL28Q9NRJ3 127 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 COMMD9Q9P000 198 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 MTFP1Q9UDX5 166 aa11.28□□□□□ -0.6
CCDC88C-207ENST00000554051 GPR31O00270 319 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 IGLV1-40P01703 118 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 FCER2P06734 321 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 CRYGBP07316 175 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 SAA1P0DJI8 122 aaPredicted RBP11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 ECI1P42126 302 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 CDX1P47902 265 aaPredicted RBP11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 RFX2P48378 723 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 UCP3P55916 312 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 TAS2R31P59538 309 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 NDPQ00604 133 aa11.27□□□□□ -0.61
CCDC88C-207ENST00000554051 IL18Q14116 193 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms