RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 Q6ZS49 121 aa12.6□□□□□ -0.39
VPS29-207ENST00000549970 POC5Q8NA72 575 aa12.6□□□□□ -0.39
VPS29-207ENST00000549970 NUDCD2Q8WVJ2 157 aa12.6□□□□□ -0.39
VPS29-207ENST00000549970 CENPOQ9BU64 300 aa12.6□□□□□ -0.39
VPS29-207ENST00000549970 ST6GALNAC5Q9BVH7 336 aa12.6□□□□□ -0.39
VPS29-207ENST00000549970 OR51E2Q9H255 320 aa12.6□□□□□ -0.39
VPS29-207ENST00000549970 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.6□□□□□ -0.39
VPS29-207ENST00000549970 RRP15Q9Y3B9 282 aaKnown RBP12.6□□□□□ -0.39
VPS29-207ENST00000549970 KMT2CQ8NEZ4 4911 aaKnown RBP12.6□□□□□ -0.39
VPS29-207ENST00000549970 TMEM235A6NFC5 223 aa12.59□□□□□ -0.39
VPS29-207ENST00000549970 SRRM4A7MD48 611 aaKnown RBP12.59□□□□□ -0.39
VPS29-207ENST00000549970 RRASP10301 218 aa12.59□□□□□ -0.39
VPS29-207ENST00000549970 DUTP33316 252 aaKnown RBP12.59□□□□□ -0.39
VPS29-207ENST00000549970 TAGLNQ01995 201 aaKnown RBP12.59□□□□□ -0.39
VPS29-207ENST00000549970 HACD4Q5VWC8 232 aa12.59□□□□□ -0.39
VPS29-207ENST00000549970 SFXN4Q6P4A7 337 aa12.59□□□□□ -0.39
VPS29-207ENST00000549970 ZNF773Q6PK81 442 aa12.59□□□□□ -0.39
VPS29-207ENST00000549970 TPRA1Q86W33 373 aa12.59□□□□□ -0.39
VPS29-207ENST00000549970 LGALS14Q8TCE9 139 aa12.59□□□□□ -0.39
VPS29-207ENST00000549970 RHOVQ96L33 236 aa12.59□□□□□ -0.39
VPS29-207ENST00000549970 YTHDF1Q9BYJ9 559 aaKnown RBP12.59□□□□□ -0.39
VPS29-207ENST00000549970 LINC00473A8K010 186 aa12.58□□□□□ -0.4
VPS29-207ENST00000549970 CRYZL1O95825 349 aa12.58□□□□□ -0.4
VPS29-207ENST00000549970 APELAP0DMC3 54 aa12.58□□□□□ -0.4
VPS29-207ENST00000549970 NFYAP23511 347 aaPredicted RBP12.58□□□□□ -0.4
VPS29-207ENST00000549970 PITPNAQ00169 270 aa12.58□□□□□ -0.4
VPS29-207ENST00000549970 MXD1Q05195 221 aa12.58□□□□□ -0.4
VPS29-207ENST00000549970 DDB2Q92466 427 aa12.58□□□□□ -0.4
VPS29-207ENST00000549970 ADTRPQ96IZ2 230 aa12.58□□□□□ -0.4
VPS29-207ENST00000549970 ASCL2Q99929 193 aa12.58□□□□□ -0.4
VPS29-207ENST00000549970 C13orf42A0A1B0GVH6 325 aa12.57□□□□□ -0.4
VPS29-207ENST00000549970 H3BUA1 57 aa12.57□□□□□ -0.4
VPS29-207ENST00000549970 SCGNO76038 276 aa12.57□□□□□ -0.4
VPS29-207ENST00000549970 NHLRC4P0CG21 123 aaPredicted RBP12.57□□□□□ -0.4
VPS29-207ENST00000549970 SPNP16150 400 aa12.57□□□□□ -0.4
VPS29-207ENST00000549970 SDC2P34741 201 aa12.57□□□□□ -0.4
VPS29-207ENST00000549970 GNG2P59768 71 aa12.57□□□□□ -0.4
VPS29-207ENST00000549970 DEFA5Q01523 94 aa12.57□□□□□ -0.4
VPS29-207ENST00000549970 VMA21Q3ZAQ7 101 aa12.57□□□□□ -0.4
VPS29-207ENST00000549970 ACSM6Q6P461 480 aa12.57□□□□□ -0.4
VPS29-207ENST00000549970 IDO2Q6ZQW0 420 aa12.57□□□□□ -0.4
VPS29-207ENST00000549970 ZNF645Q8N7E2 425 aa12.57□□□□□ -0.4
VPS29-207ENST00000549970 WWC2-AS2Q96NR7 200 aa12.57□□□□□ -0.4
VPS29-207ENST00000549970 PHB2Q99623 299 aa12.57□□□□□ -0.4
VPS29-207ENST00000549970 RNF167Q9H6Y7 350 aa12.57□□□□□ -0.4
VPS29-207ENST00000549970 TNCP24821 2201 aa12.56□□□□□ -0.4
VPS29-207ENST00000549970 LOC100506127A0A0U1RQW1 187 aa12.56□□□□□ -0.4
VPS29-207ENST00000549970 ANKRD34BA5PLL1 514 aa12.56□□□□□ -0.4
VPS29-207ENST00000549970 CTXN2P0C2S0 81 aa12.56□□□□□ -0.4
VPS29-207ENST00000549970 CLEC2LP0C7M8 214 aa12.56□□□□□ -0.4
VPS29-207ENST00000549970 UBE2KP61086 200 aa12.56□□□□□ -0.4
VPS29-207ENST00000549970 NEDD8Q15843 81 aa12.56□□□□□ -0.4
VPS29-207ENST00000549970 TNXAQ16473 311 aa12.56□□□□□ -0.4
VPS29-207ENST00000549970 MRGPRG-AS1Q2M3A8 158 aa12.56□□□□□ -0.4
VPS29-207ENST00000549970 OR6Q1Q8NGQ2 317 aa12.56□□□□□ -0.4
VPS29-207ENST00000549970 TMEM68Q96MH6 324 aa12.56□□□□□ -0.4
VPS29-207ENST00000549970 OR4C12Q96R67 309 aa12.56□□□□□ -0.4
VPS29-207ENST00000549970 DCSTAMPQ9H295 470 aa12.56□□□□□ -0.4
VPS29-207ENST00000549970 RHBDL2Q9NX52 303 aa12.56□□□□□ -0.4
VPS29-207ENST00000549970 COA4Q9NYJ1 87 aa12.56□□□□□ -0.4
VPS29-207ENST00000549970 OR2W1Q9Y3N9 320 aa12.56□□□□□ -0.4
VPS29-207ENST00000549970 SMAD5-AS1Q9Y6J3 95 aa12.56□□□□□ -0.4
VPS29-207ENST00000549970 U3KQK5 164 aa12.56□□□□□ -0.4
VPS29-207ENST00000549970 A0A0G2JLM5 398 aa12.55□□□□□ -0.4
VPS29-207ENST00000549970 SSX5O60225 188 aa12.55□□□□□ -0.4
VPS29-207ENST00000549970 FCGR3BO75015 233 aa12.55□□□□□ -0.4
VPS29-207ENST00000549970 TUSC2O75896 110 aa12.55□□□□□ -0.4
VPS29-207ENST00000549970 OR2B11Q5JQS5 317 aa12.55□□□□□ -0.4
VPS29-207ENST00000549970 CNIH2Q6PI25 160 aa12.55□□□□□ -0.4
VPS29-207ENST00000549970 KCTD9Q7L273 389 aa12.55□□□□□ -0.4
VPS29-207ENST00000549970 TEX45Q8NA69 505 aa12.55□□□□□ -0.4
VPS29-207ENST00000549970 OR5H6Q8NGV6 325 aa12.55□□□□□ -0.4
VPS29-207ENST00000549970 ACOT12Q8WYK0 555 aa12.55□□□□□ -0.4
VPS29-207ENST00000549970 DCUN1D5Q9BTE7 237 aa12.55□□□□□ -0.4
VPS29-207ENST00000549970 RANGRFQ9HD47 186 aaPredicted RBP12.55□□□□□ -0.4
VPS29-207ENST00000549970 IGKV1D-13A0A0B4J2D9 117 aa12.54□□□□□ -0.4
VPS29-207ENST00000549970 MSGN1A6NI15 193 aa12.54□□□□□ -0.4
VPS29-207ENST00000549970 HLA-DQB1P01920 261 aa12.54□□□□□ -0.4
VPS29-207ENST00000549970 SAA1P0DJI8 122 aaPredicted RBP12.54□□□□□ -0.4
VPS29-207ENST00000549970 IGKV1-13P0DP09 117 aa12.54□□□□□ -0.4
VPS29-207ENST00000549970 GP9P14770 177 aa12.54□□□□□ -0.4
VPS29-207ENST00000549970 CD36P16671 472 aa12.54□□□□□ -0.4
VPS29-207ENST00000549970 PRSS8Q16651 343 aa12.54□□□□□ -0.4
VPS29-207ENST00000549970 IDNKQ5T6J7 187 aa12.54□□□□□ -0.4
VPS29-207ENST00000549970 HAPLN4Q86UW8 402 aa12.54□□□□□ -0.4
VPS29-207ENST00000549970 OSR1Q8TAX0 266 aaPredicted RBP12.54□□□□□ -0.4
VPS29-207ENST00000549970 SRSF12Q8WXF0 261 aaKnown RBP12.54□□□□□ -0.4
VPS29-207ENST00000549970 RSRP1Q9BUV0 290 aa12.54□□□□□ -0.4
VPS29-207ENST00000549970 TINAGL1Q9GZM7 467 aaPredicted RBP12.54□□□□□ -0.4
VPS29-207ENST00000549970 ANXA10Q9UJ72 324 aa12.54□□□□□ -0.4
VPS29-207ENST00000549970 RBMX2Q9Y388 322 aaKnown RBP12.54□□□□□ -0.4
VPS29-207ENST00000549970 MPPED1O15442 326 aa12.53□□□□□ -0.4
VPS29-207ENST00000549970 ZP3P21754 424 aa12.53□□□□□ -0.4
VPS29-207ENST00000549970 RPL30P62888 115 aaKnown RBP12.53□□□□□ -0.4
VPS29-207ENST00000549970 SLC25A38Q96DW6 304 aa12.53□□□□□ -0.4
VPS29-207ENST00000549970 ELOVL1Q9BW60 279 aa12.53□□□□□ -0.4
VPS29-207ENST00000549970 ZNF430Q9H8G1 570 aaPredicted RBP12.53□□□□□ -0.4
VPS29-207ENST00000549970 MRPS7Q9Y2R9 242 aaKnown RBP12.53□□□□□ -0.4
VPS29-207ENST00000549970 PRELID3BQ9Y3B1 194 aa12.53□□□□□ -0.4
VPS29-207ENST00000549970 ETV7Q9Y603 341 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms