RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 SCGB3A2Q96PL1 93 aa16.91■□□□□ 0.3
VPS29-206ENST00000549578 SLC25A21Q9BQT8 299 aaPredicted RBP16.91■□□□□ 0.3
VPS29-206ENST00000549578 COPZ2Q9P299 210 aa16.91■□□□□ 0.3
VPS29-206ENST00000549578 C2CD3Q4AC94 2353 aa16.91■□□□□ 0.3
VPS29-206ENST00000549578 RNF212BA8MTL3 300 aa16.91■□□□□ 0.3
VPS29-206ENST00000549578 RAMP3O60896 148 aa16.91■□□□□ 0.3
VPS29-206ENST00000549578 RRASP10301 218 aa16.91■□□□□ 0.3
VPS29-206ENST00000549578 CBX3Q13185 183 aa16.91■□□□□ 0.3
VPS29-206ENST00000549578 MMDQ15546 238 aa16.91■□□□□ 0.3
VPS29-206ENST00000549578 SPAG16Q8N0X2 631 aa16.91■□□□□ 0.3
VPS29-206ENST00000549578 ADAD2Q8NCV1 583 aaKnown RBP16.91■□□□□ 0.3
VPS29-206ENST00000549578 TAF15Q92804 592 aaKnown RBP eCLIP16.91■□□□□ 0.3
VPS29-206ENST00000549578 NCBP2LA6PVI3 153 aaKnown RBP16.9■□□□□ 0.3
VPS29-206ENST00000549578 MPPED1O15442 326 aa16.9■□□□□ 0.3
VPS29-206ENST00000549578 NDUFB6O95139 128 aa16.9■□□□□ 0.3
VPS29-206ENST00000549578 F2RP25116 425 aa16.9■□□□□ 0.3
VPS29-206ENST00000549578 RPS16P62249 146 aaKnown RBP16.9■□□□□ 0.3
VPS29-206ENST00000549578 CCDC71LQ8N9Z2 235 aa16.9■□□□□ 0.3
VPS29-206ENST00000549578 OR4C13Q8NGP0 309 aa16.9■□□□□ 0.3
VPS29-206ENST00000549578 OR4S2Q8NH73 311 aa16.9■□□□□ 0.3
VPS29-206ENST00000549578 HARBI1Q96MB7 349 aa16.9■□□□□ 0.3
VPS29-206ENST00000549578 RAB18Q9NP72 206 aa16.9■□□□□ 0.3
VPS29-206ENST00000549578 PLSCR3Q9NRY6 295 aa16.9■□□□□ 0.3
VPS29-206ENST00000549578 MOB4Q9Y3A3 225 aa16.9■□□□□ 0.3
VPS29-206ENST00000549578 KIR2DS2P43631 304 aa16.89■□□□□ 0.29
VPS29-206ENST00000549578 TMEM177Q53S58 311 aa16.89■□□□□ 0.29
VPS29-206ENST00000549578 DHRS7BQ6IAN0 325 aaPredicted RBP16.89■□□□□ 0.29
VPS29-206ENST00000549578 MZT2BQ6NZ67 158 aa16.89■□□□□ 0.29
VPS29-206ENST00000549578 C16orf82Q7Z2V1 217 aa16.89■□□□□ 0.29
VPS29-206ENST00000549578 TMED4Q7Z7H5 227 aa16.89■□□□□ 0.29
VPS29-206ENST00000549578 POC5Q8NA72 575 aa16.89■□□□□ 0.29
VPS29-206ENST00000549578 TMEM230Q96A57 120 aa16.89■□□□□ 0.29
VPS29-206ENST00000549578 LIN7CQ9NUP9 197 aaKnown RBP16.89■□□□□ 0.29
VPS29-206ENST00000549578 SHOXO15266 292 aa16.88■□□□□ 0.29
VPS29-206ENST00000549578 SLC6A1P30531 599 aa16.88■□□□□ 0.29
VPS29-206ENST00000549578 FLVCR2Q9UPI3 526 aa16.88■□□□□ 0.29
VPS29-206ENST00000549578 SH2D7A6NKC9 451 aaPredicted RBP16.87■□□□□ 0.29
VPS29-206ENST00000549578 SRRM4A7MD48 611 aaKnown RBP16.87■□□□□ 0.29
VPS29-206ENST00000549578 NBR2O15453 112 aa16.87■□□□□ 0.29
VPS29-206ENST00000549578 AMY1AP04745 511 aa16.87■□□□□ 0.29
VPS29-206ENST00000549578 VSIG10L2P0DP72 767 aa16.87■□□□□ 0.29
VPS29-206ENST00000549578 AKR1C4P17516 323 aa16.87■□□□□ 0.29
VPS29-206ENST00000549578 C5orf56Q8N8D9 126 aa16.87■□□□□ 0.29
VPS29-206ENST00000549578 Q8N9W7 124 aa16.87■□□□□ 0.29
VPS29-206ENST00000549578 OR8H1Q8NGG4 311 aa16.87■□□□□ 0.29
VPS29-206ENST00000549578 TP53RKQ96S44 253 aa16.87■□□□□ 0.29
VPS29-206ENST00000549578 RNF5Q99942 180 aa16.87■□□□□ 0.29
VPS29-206ENST00000549578 TEX13DA0A0J9YY54 714 aaPredicted RBP16.86■□□□□ 0.29
VPS29-206ENST00000549578 FAM240BA0A1B0GVZ2 78 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 CRYM-AS1A6NIL9 109 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 RBFOX2O43251 390 aaKnown RBP eCLIP16.86■□□□□ 0.29
VPS29-206ENST00000549578 BLCAPP62952 87 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 ZNF585BQ52M93 769 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 OSR1Q8TAX0 266 aaPredicted RBP16.86■□□□□ 0.29
VPS29-206ENST00000549578 NAA60Q9H7X0 242 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 C1RLQ9NZP8 487 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 C3orf85A0A1B0GTC6 90 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 S1PR2O95136 353 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 IGLV2-23P01705 113 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 CRYBA1P05813 215 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 DEFA1P59665 94 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 DEFA3P59666 94 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 RELBQ01201 579 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 PSG5Q15238 335 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 SP6Q3SY56 376 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 C11orf88Q6PI97 169 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 CENPSQ8N2Z9 138 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 FAM71E2Q8N5Q1 922 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 NPBQ8NG41 125 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 CD300LFQ8TDQ1 290 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 TSNAXQ99598 290 aaKnown RBP16.86■□□□□ 0.29
VPS29-206ENST00000549578 NPFFR1Q9GZQ6 430 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 FBXL15Q9H469 300 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 KIAA1456Q9P272 454 aa16.86■□□□□ 0.29
VPS29-206ENST00000549578 ATRQ13535 2644 aa16.85■□□□□ 0.29
VPS29-206ENST00000549578 H0Y980 276 aa16.85■□□□□ 0.29
VPS29-206ENST00000549578 M0QZK8 103 aa16.85■□□□□ 0.29
VPS29-206ENST00000549578 RRHO14718 337 aa16.85■□□□□ 0.29
VPS29-206ENST00000549578 ARPC1BO15143 372 aaKnown RBP16.85■□□□□ 0.29
VPS29-206ENST00000549578 FGF16O43320 207 aa16.85■□□□□ 0.29
VPS29-206ENST00000549578 SLC25A17O43808 307 aa16.85■□□□□ 0.29
VPS29-206ENST00000549578 NDUFA3O95167 84 aa16.85■□□□□ 0.29
VPS29-206ENST00000549578 TCRBP04435 133 aa16.85■□□□□ 0.29
VPS29-206ENST00000549578 LPAR6P43657 344 aa16.85■□□□□ 0.29
VPS29-206ENST00000549578 LGALS7P47929 136 aa16.85■□□□□ 0.29
VPS29-206ENST00000549578 RPL15P61313 204 aaKnown RBP16.85■□□□□ 0.29
VPS29-206ENST00000549578 VKORC1L1Q8N0U8 176 aa16.85■□□□□ 0.29
VPS29-206ENST00000549578 TCTEX1D1Q8N7M0 179 aa16.85■□□□□ 0.29
VPS29-206ENST00000549578 ZFAND2BQ8WV99 257 aa16.85■□□□□ 0.29
VPS29-206ENST00000549578 C20orf85Q9H1P6 137 aa16.85■□□□□ 0.29
VPS29-206ENST00000549578 HPRT1P00492 218 aa16.84■□□□□ 0.29
VPS29-206ENST00000549578 OR5AC1P0C628 307 aa16.84■□□□□ 0.29
VPS29-206ENST00000549578 C5orf64Q2M2E5 130 aa16.84■□□□□ 0.29
VPS29-206ENST00000549578 Q6ZS46 218 aa16.84■□□□□ 0.29
VPS29-206ENST00000549578 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.84■□□□□ 0.29
VPS29-206ENST00000549578 ENKURQ8TC29 256 aa16.84■□□□□ 0.29
VPS29-206ENST00000549578 TPSG1Q9NRR2 321 aa16.84■□□□□ 0.29
VPS29-206ENST00000549578 METTL1Q9UBP6 276 aaKnown RBP16.84■□□□□ 0.29
VPS29-206ENST00000549578 TRAV6A0A075B6T7 132 aa16.83■□□□□ 0.28
VPS29-206ENST00000549578 SPDEFO95238 335 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms