RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 A0A087X0M5 115 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 TRAV39A0A0B4J263 110 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 A0A1B0GX30 115 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 hCG_1809904A0A1W2PP81 198 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 A0A1W2PPE2 198 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 A0A1W2PR64 198 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 A0A1W2PRV1 198 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 MSGN1A6NI15 193 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 UMAD1C9J7I0 102 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 TRIM77I1YAP6 450 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 TNFSF12O43508 249 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 SYNGR2O43760 224 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 HRASP01112 189 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 FGF2P09038 288 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 OR8U8P0C7N1 319 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 NQO2P16083 231 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 NDUFB7P17568 137 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 TNCP24821 2201 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 SULT1A1P50225 295 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 SULT1A2P50226 295 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 ATP5IP56385 69 aaPredicted RBP5.1□□□□□ -1.59
SYNE1-239ENST00000545694 RPP30P78346 268 aaKnown RBP5.1□□□□□ -1.59
SYNE1-239ENST00000545694 LY6DQ14210 128 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 POU2AF1Q16633 256 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 ATP6V1FQ16864 119 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 PDLIM3Q53GG5 364 aaPredicted RBP5.1□□□□□ -1.59
SYNE1-239ENST00000545694 SPRNQ5BIV9 151 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 DPPA3Q6W0C5 159 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 IL34Q6ZMJ4 242 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 SLC25A48Q6ZT89 311 aaKnown RBP5.1□□□□□ -1.59
SYNE1-239ENST00000545694 H2BFWTQ7Z2G1 175 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 COMMD7Q86VX2 200 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 FOXRED2Q8IWF2 684 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 PUSL1Q8N0Z8 303 aaKnown RBP5.1□□□□□ -1.59
SYNE1-239ENST00000545694 ZNF439Q8NDP4 499 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 DEFB108BQ8NET1 73 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 OR4S2Q8NH73 311 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 RFESDQ8TAC1 157 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 CCL17Q92583 94 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 RAB1CQ92928 201 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 GNPNAT1Q96EK6 184 aaPredicted RBP5.1□□□□□ -1.59
SYNE1-239ENST00000545694 RHOVQ96L33 236 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 ZNF714Q96N38 554 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 CLCC1Q96S66 551 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 GINS3Q9BRX5 216 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 PARD6GQ9BYG4 376 aaPredicted RBP5.1□□□□□ -1.59
SYNE1-239ENST00000545694 IFI27L2Q9H2X8 130 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 PARP11Q9NR21 331 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 HSPB7Q9UBY9 170 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 CACNG5Q9UF02 275 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 FBXL17Q9UF56 701 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 RNF150Q9ULK6 438 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 STRAPQ9Y3F4 350 aaKnown RBP5.1□□□□□ -1.59
SYNE1-239ENST00000545694 CFAP46Q8IYW2 2715 aa5.1□□□□□ -1.59
SYNE1-239ENST00000545694 MFSD2BA6NFX1 497 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 MARCH11A6NNE9 402 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 TXNL1O43396 289 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 CHST1O43916 411 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 SSSCA1O60232 199 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 IGKV1-39P01597 117 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 IGKV1-5P01602 117 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 IGKV1D-39P04432 117 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 ZNF16P17020 682 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-239ENST00000545694 IL3RAP26951 378 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 CAV2P51636 162 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 ZNF137PP52743 207 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 UBE2KP61086 200 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 POLR2GP62487 172 aaKnown RBP eCLIP5.09□□□□□ -1.59
SYNE1-239ENST00000545694 EWSR1Q01844 656 aaKnown RBP eCLIP5.09□□□□□ -1.59
SYNE1-239ENST00000545694 TNFRSF9Q07011 255 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 RTL8BQ17RB0 113 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 CXorf66Q5JRM2 361 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-239ENST00000545694 REC114Q7Z4M0 266 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 C5orf24Q7Z6I8 188 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 ZNF429Q86V71 674 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 TMEM252Q8N6L7 170 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 TPRX1Q8N7U7 411 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 LFNGQ8NES3 379 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 OR1S2Q8NGQ3 325 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 C8orf46Q8TAG6 207 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 ITLN2Q8WWU7 325 aaPredicted RBP5.09□□□□□ -1.59
SYNE1-239ENST00000545694 TMEM186Q96B77 213 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 TSNAXQ99598 290 aaKnown RBP5.09□□□□□ -1.59
SYNE1-239ENST00000545694 PCGF1Q9BSM1 259 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 PARP12Q9H0J9 701 aaKnown RBP5.09□□□□□ -1.59
SYNE1-239ENST00000545694 HIPK2Q9H2X6 1198 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 FKBP11Q9NYL4 201 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 RALYQ9UKM9 306 aaKnown RBP5.09□□□□□ -1.59
SYNE1-239ENST00000545694 WNK2Q9Y3S1 2297 aa5.09□□□□□ -1.59
SYNE1-239ENST00000545694 USP24Q9UPU5 2620 aa5.09□□□□□ -1.6
SYNE1-239ENST00000545694 IGHV3-43A0A0B4J1X8 118 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 BTBD17A6NE02 478 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 C17orf98A8MV24 154 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 A8MXK9 166 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 M0R1X1 148 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 DVL1O14640 695 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 IFNA5P01569 189 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 IGHV2-70P01814 119 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 APOA2P02652 100 aa5.08□□□□□ -1.6
SYNE1-239ENST00000545694 FAM157CP0CG43 387 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms