RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 ANKRD11Q6UB99 2663 aaPredicted RBP12.56□□□□□ -0.4
USP28-214ENST00000545540 TMEM30CPA0ZSE6 113 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 ZNF705GA8MUZ8 300 aaPredicted RBP12.56□□□□□ -0.4
USP28-214ENST00000545540 NPPCP23582 126 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 ZNF66Q6ZN08 573 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 ABHD12Q8N2K0 398 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 HINT2Q9BX68 163 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 PLXNB1O43157 2135 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 OTOGLQ3ZCN5 2332 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 OR9G9P0C7N8 305 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 MRPL49Q13405 166 aaKnown RBP12.56□□□□□ -0.4
USP28-214ENST00000545540 ZNF146Q15072 292 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 TMEM14EPQ6UXP3 125 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 OR2Z1Q8NG97 314 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 HIST1H2BLQ99880 126 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 DDA1Q9BW61 102 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 GPR87Q9BY21 358 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 PRDM13Q9H4Q3 707 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 GNG12Q9UBI6 72 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 FUT9Q9Y231 359 aa12.56□□□□□ -0.4
USP28-214ENST00000545540 CD33P20138 364 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 GALR1P47211 349 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 PSMB3P49720 205 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 LINC00596Q86U02 117 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 SSMEM1Q8WWF3 244 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 SIRT7Q9NRC8 400 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.55□□□□□ -0.4
USP28-214ENST00000545540 TRAV1-1A0A0B4J248 108 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 H7BYZ3 331 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 PROP1O75360 226 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 IFNA10P01566 189 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 FDCSPQ8NFU4 85 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 FAM122AQ96E09 287 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 NPCDR1Q9BY65 106 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 GFOD1Q9NXC2 390 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 SPTA1P02549 2419 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 MARCH11A6NNE9 402 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 SERF2P84101 59 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 WDR82Q6UXN9 313 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 ZNF709Q8N972 641 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 DEFB108BQ8NET1 73 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 ZPBPQ9BS86 351 aa12.55□□□□□ -0.4
USP28-214ENST00000545540 OPN3Q9H1Y3 402 aaPredicted RBP12.55□□□□□ -0.4
USP28-214ENST00000545540 ASPHD1Q5U4P2 390 aa12.54□□□□□ -0.4
USP28-214ENST00000545540 DUX4L9Q6RFH8 374 aaPredicted RBP12.54□□□□□ -0.4
USP28-214ENST00000545540 ZNF114Q8NC26 417 aa12.54□□□□□ -0.4
USP28-214ENST00000545540 OR10A7Q8NGE5 316 aa12.54□□□□□ -0.4
USP28-214ENST00000545540 OR13D1Q8NGV5 346 aa12.54□□□□□ -0.4
USP28-214ENST00000545540 SNIP1Q8TAD8 396 aaKnown RBP12.54□□□□□ -0.4
USP28-214ENST00000545540 LRRC29Q8WV35 223 aa12.54□□□□□ -0.4
USP28-214ENST00000545540 ZNRD1Q9P1U0 126 aa12.54□□□□□ -0.4
USP28-214ENST00000545540 HSPB7Q9UBY9 170 aa12.54□□□□□ -0.4
USP28-214ENST00000545540 GABRA6Q16445 453 aa12.54□□□□□ -0.4
USP28-214ENST00000545540 CD177Q8N6Q3 437 aa12.54□□□□□ -0.4
USP28-214ENST00000545540 C9orf106Q8NAJ2 232 aa12.54□□□□□ -0.4
USP28-214ENST00000545540 PSMG3Q9BT73 122 aaPredicted RBP12.54□□□□□ -0.4
USP28-214ENST00000545540 WIPI2Q9Y4P8 454 aa12.54□□□□□ -0.4
USP28-214ENST00000545540 RRHO14718 337 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 NDUFB4O95168 129 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 CECR9P0C854 216 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 GPX4P36969 197 aaPredicted RBP12.53□□□□□ -0.4
USP28-214ENST00000545540 GNB2P62879 340 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 DEFA6Q01524 100 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 OPA3Q9H6K4 179 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 XKRY2A2RUG3 117 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 SLC25A6P12236 298 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 WT1P19544 449 aaPredicted RBP12.53□□□□□ -0.4
USP28-214ENST00000545540 THBS3P49746 956 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 MSMPQ1L6U9 139 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 DPPA3Q6W0C5 159 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 ACP7Q6ZNF0 438 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 NAT8Q9UHE5 227 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 LRBAP50851 2863 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 C11orf94C9JXX5 98 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 M0R1X1 148 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 GYPAP02724 150 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 SNRPCP09234 159 aaKnown RBP12.53□□□□□ -0.4
USP28-214ENST00000545540 C1QTNF9P0C862 333 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 HOXC12P31275 282 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 MSMO1Q15800 293 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 C1orf229Q6ZS94 237 aaPredicted RBP12.53□□□□□ -0.4
USP28-214ENST00000545540 KMT2EQ8IZD2 1858 aa12.53□□□□□ -0.4
USP28-214ENST00000545540 C19orf67A6NJJ6 358 aa12.52□□□□□ -0.4
USP28-214ENST00000545540 PMS2P5A8MQ11 134 aa12.52□□□□□ -0.4
USP28-214ENST00000545540 C21orf140B9A014 251 aa12.52□□□□□ -0.4
USP28-214ENST00000545540 IFNA1P01562 189 aa12.52□□□□□ -0.4
USP28-214ENST00000545540 ZNF134P52741 427 aa12.52□□□□□ -0.4
USP28-214ENST00000545540 TCF23Q7RTU1 214 aa12.52□□□□□ -0.4
USP28-214ENST00000545540 FER1L6-AS2Q96M78 137 aa12.52□□□□□ -0.4
USP28-214ENST00000545540 ZMAT5Q9UDW3 170 aaKnown RBP12.52□□□□□ -0.4
USP28-214ENST00000545540 DMRT1Q9Y5R6 373 aa12.52□□□□□ -0.4
USP28-214ENST00000545540 CEP295Q9C0D2 2601 aa12.52□□□□□ -0.41
USP28-214ENST00000545540 RNF224P0DH78 156 aa12.52□□□□□ -0.41
USP28-214ENST00000545540 FAM78BQ5VT40 261 aa12.52□□□□□ -0.41
USP28-214ENST00000545540 MIC13Q5XKP0 118 aa12.52□□□□□ -0.41
USP28-214ENST00000545540 FAM214BQ7L5A3 538 aa12.52□□□□□ -0.41
USP28-214ENST00000545540 MOB1BQ7L9L4 216 aa12.52□□□□□ -0.41
USP28-214ENST00000545540 R3HDM4Q96D70 268 aa12.52□□□□□ -0.41
USP28-214ENST00000545540 TMEM147Q9BVK8 224 aa12.52□□□□□ -0.41
USP28-214ENST00000545540 HEYLQ9NQ87 328 aaPredicted RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms