RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 PBDC1Q9BVG4 233 aa11.83□□□□□ -0.52
VPS33A-209ENST00000544349 LIN7CQ9NUP9 197 aaKnown RBP11.83□□□□□ -0.52
VPS33A-209ENST00000544349 ANKHD1Q8IWZ3 2542 aaKnown RBP11.82□□□□□ -0.52
VPS33A-209ENST00000544349 DOCK11Q5JSL3 2073 aa11.82□□□□□ -0.52
VPS33A-209ENST00000544349 A0A1B0GW64 132 aa11.82□□□□□ -0.52
VPS33A-209ENST00000544349 F2RL2O00254 374 aa11.82□□□□□ -0.52
VPS33A-209ENST00000544349 SLC25A6P12236 298 aa11.82□□□□□ -0.52
VPS33A-209ENST00000544349 PAX6P26367 422 aa11.82□□□□□ -0.52
VPS33A-209ENST00000544349 RPL35P42766 123 aaKnown RBP11.82□□□□□ -0.52
VPS33A-209ENST00000544349 HAGHQ16775 308 aa11.82□□□□□ -0.52
VPS33A-209ENST00000544349 C17orf58Q2M2W7 97 aa11.82□□□□□ -0.52
VPS33A-209ENST00000544349 STX12Q86Y82 276 aa11.82□□□□□ -0.52
VPS33A-209ENST00000544349 ZNF645Q8N7E2 425 aa11.82□□□□□ -0.52
VPS33A-209ENST00000544349 LSM10Q969L4 123 aaKnown RBP11.82□□□□□ -0.52
VPS33A-209ENST00000544349 CALYQ9NYX4 217 aa11.82□□□□□ -0.52
VPS33A-209ENST00000544349 JPT1Q9UK76 154 aa11.82□□□□□ -0.52
VPS33A-209ENST00000544349 RNF150Q9ULK6 438 aa11.82□□□□□ -0.52
VPS33A-209ENST00000544349 A0A1W2PPE2 198 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 RAMP3O60896 148 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 FBP1P09467 338 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 METTL15P1P0C7V9 234 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 LTC4SQ16873 150 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 OR2B11Q5JQS5 317 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 FGFRL1Q8N441 504 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 C15orf54Q8N8G6 183 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 ZBTB34Q8NCN2 500 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 GNPNAT1Q96EK6 184 aaPredicted RBP11.81□□□□□ -0.52
VPS33A-209ENST00000544349 RSG1Q9BU20 258 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 OR2D2Q9H210 308 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 CBLN4Q9NTU7 201 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 TRGV10A0A0A0MS01 117 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 RBFOX3A6NFN3 312 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 SYNGR2O43760 224 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 YPEL1O60688 119 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 LOXL3P58215 753 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 TAS2R30P59541 319 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 RPL23AP62750 156 aaKnown RBP11.81□□□□□ -0.52
VPS33A-209ENST00000544349 MORN2Q502X0 79 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 TCF23Q7RTU1 214 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 THNSL2Q86YJ6 484 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 YPEL2Q96QA6 119 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 RAB40CQ96S21 281 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 VSIRQ9H7M9 311 aa11.81□□□□□ -0.52
VPS33A-209ENST00000544349 SLC25A10Q9UBX3 287 aaPredicted RBP11.81□□□□□ -0.52
VPS33A-209ENST00000544349 C19orf84I3L1E1 186 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 ARG1P05089 322 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 NDUFB7P17568 137 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 COL8A2P25067 703 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 AKR1D1P51857 326 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 RPL30P62888 115 aaKnown RBP11.8□□□□□ -0.52
VPS33A-209ENST00000544349 ICAM4Q14773 271 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 MSMO1Q15800 293 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 AKR1C8PQ5T2L2 129 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 LYPD2Q6UXB3 125 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 CORO2AQ92828 525 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 AGMATQ9BSE5 352 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 RAB9BQ9NP90 201 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 KIAA1456Q9P272 454 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 GNG12Q9UBI6 72 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 WSB1Q9Y6I7 421 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 KBTBD11-OT1A0A1B0GTJ5 212 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 hCG_1809904A0A1W2PP81 198 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 A0A1W2PR64 198 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 A0A1W2PRV1 198 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 FOLR2P14207 255 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 C11orf71Q6IPW1 123 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 SSX7Q7RTT5 188 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 ZNF525Q8N782 197 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 SFT2D1Q8WV19 159 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 EDARADDQ8WWZ3 215 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 PSENENQ9NZ42 101 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 CLN8Q9UBY8 286 aa11.8□□□□□ -0.52
VPS33A-209ENST00000544349 ST8SIA5O15466 376 aa11.79□□□□□ -0.52
VPS33A-209ENST00000544349 KALRNO60229 2985 aa11.79□□□□□ -0.52
VPS33A-209ENST00000544349 FCN3O75636 299 aa11.79□□□□□ -0.52
VPS33A-209ENST00000544349 SRP19P09132 144 aaKnown RBP11.79□□□□□ -0.52
VPS33A-209ENST00000544349 EIF4EBP1Q13541 118 aaPredicted RBP11.79□□□□□ -0.52
VPS33A-209ENST00000544349 BBC3Q96PG8 261 aaPredicted RBP11.79□□□□□ -0.52
VPS33A-209ENST00000544349 RAB1BQ9H0U4 201 aa11.79□□□□□ -0.52
VPS33A-209ENST00000544349 KAAG1Q9UBP8 84 aa11.79□□□□□ -0.52
VPS33A-209ENST00000544349 PSG11Q9UQ72 335 aa11.79□□□□□ -0.52
VPS33A-209ENST00000544349 PUS1Q9Y606 427 aaKnown RBP eCLIP11.79□□□□□ -0.52
VPS33A-209ENST00000544349 ABCA4P78363 2273 aa11.79□□□□□ -0.52
VPS33A-209ENST00000544349 A0A1W2PPR1 153 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 hADV38S2A0JD32 116 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 ZNF729A6NN14 1252 aaPredicted RBP11.78□□□□□ -0.52
VPS33A-209ENST00000544349 RNF212BA8MTL3 300 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 LYNX1G3V0Z9 82 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 DFFBO76075 338 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 SCAF4O95104 1147 aaKnown RBP11.78□□□□□ -0.52
VPS33A-209ENST00000544349 SOD3P08294 240 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 LYNX1P0DP58 116 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 IGFBP2P18065 325 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 CEBPGP53567 150 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 ZNF816Q0VGE8 651 aaPredicted RBP11.78□□□□□ -0.52
VPS33A-209ENST00000544349 SOHLH1Q5JUK2 328 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 BTNL3Q6UXE8 466 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 CLDND2Q8NHS1 167 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 FAM216AQ8WUB2 273 aa11.78□□□□□ -0.52
VPS33A-209ENST00000544349 LINC00574Q9H8X3 128 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms