RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 GSTT2BP0CG30 244 aa11.67□□□□□ -0.54
CLSTN3-213ENST00000541953 CD81P60033 236 aa11.67□□□□□ -0.54
CLSTN3-213ENST00000541953 RPEL1Q2QD12 228 aa11.67□□□□□ -0.54
CLSTN3-213ENST00000541953 TMEM177Q53S58 311 aa11.67□□□□□ -0.54
CLSTN3-213ENST00000541953 PACRGLQ8N7B6 248 aa11.67□□□□□ -0.54
CLSTN3-213ENST00000541953 DDB2Q92466 427 aa11.67□□□□□ -0.54
CLSTN3-213ENST00000541953 PLGRKTQ9HBL7 147 aa11.67□□□□□ -0.54
CLSTN3-213ENST00000541953 AKIP1Q9NQ31 210 aa11.67□□□□□ -0.54
CLSTN3-213ENST00000541953 SIGLEC8Q9NYZ4 499 aa11.67□□□□□ -0.54
CLSTN3-213ENST00000541953 DMRT1Q9Y5R6 373 aa11.67□□□□□ -0.54
CLSTN3-213ENST00000541953 IGKV1D-8A0A087WSZ0 117 aa11.66□□□□□ -0.54
CLSTN3-213ENST00000541953 SHISA3A0PJX4 238 aa11.66□□□□□ -0.54
CLSTN3-213ENST00000541953 LINC00473A8K010 186 aa11.66□□□□□ -0.54
CLSTN3-213ENST00000541953 SHOXO15266 292 aa11.66□□□□□ -0.54
CLSTN3-213ENST00000541953 FABP7O15540 132 aa11.66□□□□□ -0.54
CLSTN3-213ENST00000541953 OR2A4O95047 310 aa11.66□□□□□ -0.54
CLSTN3-213ENST00000541953 IFNA6P05013 189 aa11.66□□□□□ -0.54
CLSTN3-213ENST00000541953 RHOGP84095 191 aa11.66□□□□□ -0.54
CLSTN3-213ENST00000541953 TAGLNQ01995 201 aaKnown RBP11.66□□□□□ -0.54
CLSTN3-213ENST00000541953 EXOSC2Q13868 293 aaKnown RBP11.66□□□□□ -0.54
CLSTN3-213ENST00000541953 RCN1Q15293 331 aa11.66□□□□□ -0.54
CLSTN3-213ENST00000541953 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.66□□□□□ -0.54
CLSTN3-213ENST00000541953 SRSF12Q8WXF0 261 aaKnown RBP11.66□□□□□ -0.54
CLSTN3-213ENST00000541953 NEURL2Q9BR09 285 aa11.66□□□□□ -0.54
CLSTN3-213ENST00000541953 URM1Q9BTM9 101 aaKnown RBP11.66□□□□□ -0.54
CLSTN3-213ENST00000541953 CABLES2Q9BTV7 478 aa11.66□□□□□ -0.54
CLSTN3-213ENST00000541953 MND1Q9BWT6 205 aa11.66□□□□□ -0.54
CLSTN3-213ENST00000541953 HERC2O95714 4834 aa11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 TMEM272A0A1B0GTI8 110 aa11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 PPP5D1E7EU14 171 aa11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 PTGES3LE9PB15 166 aa11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 HLA-AP01891 365 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 FCGR3AP08637 254 aa11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 AADACP22760 399 aa11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 LGALS7P47929 136 aa11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 IRF3Q14653 427 aa11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 SPHARQ15513 63 aa11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 MED22Q15528 200 aa11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 TNXAQ16473 311 aa11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 PRSS8Q16651 343 aa11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 RNLSQ5VYX0 342 aa11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 OR4A4PQ8NGN8 299 aa11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 CACNG8Q8WXS5 425 aa11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 PHB2Q99623 299 aa11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 KRTAP17-1Q9BYP8 105 aa11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 MGAT4AQ9UM21 535 aa11.65□□□□□ -0.54
CLSTN3-213ENST00000541953 TRBV6-7A0A0A0MS04 114 aa11.64□□□□□ -0.55
CLSTN3-213ENST00000541953 JTBO76095 146 aa11.64□□□□□ -0.55
CLSTN3-213ENST00000541953 CRYZL1O95825 349 aa11.64□□□□□ -0.55
CLSTN3-213ENST00000541953 OR9G9P0C7N8 305 aa11.64□□□□□ -0.55
CLSTN3-213ENST00000541953 RAB11BQ15907 218 aa11.64□□□□□ -0.55
CLSTN3-213ENST00000541953 C2orf76Q3KRA6 126 aa11.64□□□□□ -0.55
CLSTN3-213ENST00000541953 HES5Q5TA89 166 aa11.64□□□□□ -0.55
CLSTN3-213ENST00000541953 OGFRL1Q5TC84 451 aaPredicted RBP11.64□□□□□ -0.55
CLSTN3-213ENST00000541953 FAM3DQ96BQ1 224 aa11.64□□□□□ -0.55
CLSTN3-213ENST00000541953 USMG5Q96IX5 58 aa11.64□□□□□ -0.55
CLSTN3-213ENST00000541953 ZNF430Q9H8G1 570 aaPredicted RBP11.64□□□□□ -0.55
CLSTN3-213ENST00000541953 ELF5Q9UKW6 265 aaPredicted RBP11.64□□□□□ -0.55
CLSTN3-213ENST00000541953 VPS13DQ5THJ4 4388 aa11.64□□□□□ -0.55
CLSTN3-213ENST00000541953 TRBV9A0A0B4J1U6 114 aa11.63□□□□□ -0.55
CLSTN3-213ENST00000541953 DUTP33316 252 aaKnown RBP11.63□□□□□ -0.55
CLSTN3-213ENST00000541953 UBE2KP61086 200 aa11.63□□□□□ -0.55
CLSTN3-213ENST00000541953 DEFB114Q30KQ6 69 aa11.63□□□□□ -0.55
CLSTN3-213ENST00000541953 ACOT12Q8WYK0 555 aa11.63□□□□□ -0.55
CLSTN3-213ENST00000541953 SNAPC3Q92966 411 aa11.63□□□□□ -0.55
CLSTN3-213ENST00000541953 WDR89Q96FK6 387 aaPredicted RBP11.63□□□□□ -0.55
CLSTN3-213ENST00000541953 TMEM68Q96MH6 324 aa11.63□□□□□ -0.55
CLSTN3-213ENST00000541953 SRD5A3Q9H8P0 318 aa11.63□□□□□ -0.55
CLSTN3-213ENST00000541953 S4R3C0 116 aa11.63□□□□□ -0.55
CLSTN3-213ENST00000541953 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.62□□□□□ -0.55
CLSTN3-213ENST00000541953 A0A0B4J203 849 aa11.62□□□□□ -0.55
CLSTN3-213ENST00000541953 A0A1B0GW64 132 aa11.62□□□□□ -0.55
CLSTN3-213ENST00000541953 HMX3A6NHT5 357 aa11.62□□□□□ -0.55
CLSTN3-213ENST00000541953 E7EUB6 86 aa11.62□□□□□ -0.55
CLSTN3-213ENST00000541953 MFNGO00587 321 aa11.62□□□□□ -0.55
CLSTN3-213ENST00000541953 DENRO43583 198 aaKnown RBP11.62□□□□□ -0.55
CLSTN3-213ENST00000541953 OR2J3O76001 311 aa11.62□□□□□ -0.55
CLSTN3-213ENST00000541953 SAA1P0DJI8 122 aaPredicted RBP11.62□□□□□ -0.55
CLSTN3-213ENST00000541953 GNB3P16520 340 aa11.62□□□□□ -0.55
CLSTN3-213ENST00000541953 OR10A3P58181 314 aa11.62□□□□□ -0.55
CLSTN3-213ENST00000541953 OR56B1Q8NGI3 324 aa11.62□□□□□ -0.55
CLSTN3-213ENST00000541953 UFD1Q92890 307 aa11.62□□□□□ -0.55
CLSTN3-213ENST00000541953 NKX1-2Q9UD57 310 aaPredicted RBP11.62□□□□□ -0.55
CLSTN3-213ENST00000541953 HECTD4Q9Y4D8 3996 aa11.62□□□□□ -0.55
CLSTN3-213ENST00000541953 A0A075B6Q4 140 aa11.61□□□□□ -0.55
CLSTN3-213ENST00000541953 C2orf70A6NJV1 201 aa11.61□□□□□ -0.55
CLSTN3-213ENST00000541953 OR11H12B2RN74 326 aa11.61□□□□□ -0.55
CLSTN3-213ENST00000541953 J3QRK9 145 aa11.61□□□□□ -0.55
CLSTN3-213ENST00000541953 TPPPO94811 219 aa11.61□□□□□ -0.55
CLSTN3-213ENST00000541953 IGHV3-23P01764 117 aa11.61□□□□□ -0.55
CLSTN3-213ENST00000541953 CALRP27797 417 aaKnown RBP11.61□□□□□ -0.55
CLSTN3-213ENST00000541953 SERPINB10P48595 397 aa11.61□□□□□ -0.55
CLSTN3-213ENST00000541953 RPL30P62888 115 aaKnown RBP11.61□□□□□ -0.55
CLSTN3-213ENST00000541953 FABP5Q01469 135 aa11.61□□□□□ -0.55
CLSTN3-213ENST00000541953 EWSR1Q01844 656 aaKnown RBP eCLIP11.61□□□□□ -0.55
CLSTN3-213ENST00000541953 TPBGQ13641 420 aa11.61□□□□□ -0.55
CLSTN3-213ENST00000541953 RTL8BQ17RB0 113 aa11.61□□□□□ -0.55
CLSTN3-213ENST00000541953 OR2B11Q5JQS5 317 aa11.61□□□□□ -0.55
CLSTN3-213ENST00000541953 VKORC1L1Q8N0U8 176 aa11.61□□□□□ -0.55
CLSTN3-213ENST00000541953 TEX45Q8NA69 505 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms