RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 LEUTXA8MZ59 168 aa14.39□□□□□ -0.11
CLIP1-215ENST00000541108 KRASP01116 189 aa14.39□□□□□ -0.11
CLIP1-215ENST00000541108 ARG1P05089 322 aa14.39□□□□□ -0.11
CLIP1-215ENST00000541108 P0C879 139 aa14.39□□□□□ -0.11
CLIP1-215ENST00000541108 SLC25A4P12235 298 aa14.39□□□□□ -0.11
CLIP1-215ENST00000541108 NQO2P16083 231 aa14.39□□□□□ -0.11
CLIP1-215ENST00000541108 CEACAM3P40198 252 aa14.39□□□□□ -0.11
CLIP1-215ENST00000541108 NKX2-5P52952 324 aaPredicted RBP14.39□□□□□ -0.11
CLIP1-215ENST00000541108 LRRC37A5PQ49AS3 106 aa14.39□□□□□ -0.11
CLIP1-215ENST00000541108 TMEM65Q6PI78 240 aa14.39□□□□□ -0.11
CLIP1-215ENST00000541108 OR4D5Q8NGN0 318 aa14.39□□□□□ -0.11
CLIP1-215ENST00000541108 THAP6Q8TBB0 222 aa14.39□□□□□ -0.11
CLIP1-215ENST00000541108 GPR146Q96CH1 333 aa14.39□□□□□ -0.11
CLIP1-215ENST00000541108 NABP2Q9BQ15 211 aa14.39□□□□□ -0.11
CLIP1-215ENST00000541108 AIFM2Q9BRQ8 373 aa14.39□□□□□ -0.11
CLIP1-215ENST00000541108 MRPL20Q9BYC9 149 aaKnown RBP14.39□□□□□ -0.11
CLIP1-215ENST00000541108 SLC35D1Q9NTN3 355 aa14.39□□□□□ -0.11
CLIP1-215ENST00000541108 DPM3Q9P2X0 92 aa14.39□□□□□ -0.11
CLIP1-215ENST00000541108 A0A0G2JRQ6 117 aa14.38□□□□□ -0.11
CLIP1-215ENST00000541108 RNASEK-C17orf49H0YIS7 233 aa14.38□□□□□ -0.11
CLIP1-215ENST00000541108 PITX3O75364 302 aa14.38□□□□□ -0.11
CLIP1-215ENST00000541108 APOA2P02652 100 aa14.38□□□□□ -0.11
CLIP1-215ENST00000541108 GATA3P23771 443 aa14.38□□□□□ -0.11
CLIP1-215ENST00000541108 G6PCP35575 357 aa14.38□□□□□ -0.11
CLIP1-215ENST00000541108 RAB32Q13637 225 aa14.38□□□□□ -0.11
CLIP1-215ENST00000541108 DIAPH2-AS1Q14236 149 aa14.38□□□□□ -0.11
CLIP1-215ENST00000541108 SMCO1Q147U7 214 aa14.38□□□□□ -0.11
CLIP1-215ENST00000541108 R3HDM4Q96D70 268 aa14.38□□□□□ -0.11
CLIP1-215ENST00000541108 TBX15Q96SF7 602 aa14.38□□□□□ -0.11
CLIP1-215ENST00000541108 LPAR2Q9HBW0 351 aa14.38□□□□□ -0.11
CLIP1-215ENST00000541108 FASNP49327 2511 aaKnown RBP14.37□□□□□ -0.11
CLIP1-215ENST00000541108 FAM90A9PA6NNJ1 464 aa14.37□□□□□ -0.11
CLIP1-215ENST00000541108 H0YJW9 148 aa14.37□□□□□ -0.11
CLIP1-215ENST00000541108 HRASP01112 189 aa14.37□□□□□ -0.11
CLIP1-215ENST00000541108 HOXB4P17483 251 aaPredicted RBP14.37□□□□□ -0.11
CLIP1-215ENST00000541108 EPHA1P21709 976 aa14.37□□□□□ -0.11
CLIP1-215ENST00000541108 UBE2E1P51965 193 aa14.37□□□□□ -0.11
CLIP1-215ENST00000541108 MINOS1Q5TGZ0 78 aa14.37□□□□□ -0.11
CLIP1-215ENST00000541108 PDPNQ86YL7 162 aa14.37□□□□□ -0.11
CLIP1-215ENST00000541108 RPEQ96AT9 228 aa14.37□□□□□ -0.11
CLIP1-215ENST00000541108 MINOS1-NBL1R4GNA1 71 aa14.37□□□□□ -0.11
CLIP1-215ENST00000541108 TRAV20A0A0B4J274 112 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 ST8SIA3O43173 380 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 CRYZL1O95825 349 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 RLN2P04090 185 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 LYL1P12980 280 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 REG1BP48304 166 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 RAB13P51153 203 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 ID3Q02535 119 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 PRB3Q04118 309 aaPredicted RBP14.36□□□□□ -0.11
CLIP1-215ENST00000541108 POU2AF1Q16633 256 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 PRSS54Q6PEW0 395 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 Q6ZRM9 215 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 H2BFWTQ7Z2G1 175 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 OSR1Q8TAX0 266 aaPredicted RBP14.36□□□□□ -0.11
CLIP1-215ENST00000541108 LHX4Q969G2 390 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 RNF126Q9BV68 326 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 REG4Q9BYZ8 158 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 MBPP02686 304 aaPredicted RBP14.36□□□□□ -0.11
CLIP1-215ENST00000541108 NKX2-1P43699 371 aaPredicted RBP14.36□□□□□ -0.11
CLIP1-215ENST00000541108 ERVK-16P61578 105 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 KLRD1Q13241 179 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 ZNF546Q86UE3 836 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 LINC01356Q8N9X3 169 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 OR4C13Q8NGP0 309 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 CACNG5Q9UF02 275 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 WASHC3Q9Y3C0 194 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 ABCA2Q9BZC7 2435 aa14.36□□□□□ -0.11
CLIP1-215ENST00000541108 IGHV1-3A0A0C4DH29 117 aa14.35□□□□□ -0.11
CLIP1-215ENST00000541108 OOSP1A8MZH6 123 aa14.35□□□□□ -0.11
CLIP1-215ENST00000541108 H7C2Y5 167 aa14.35□□□□□ -0.11
CLIP1-215ENST00000541108 IGKV1-16P04430 117 aa14.35□□□□□ -0.11
CLIP1-215ENST00000541108 LGALS4P56470 323 aa14.35□□□□□ -0.11
CLIP1-215ENST00000541108 TMEM177Q53S58 311 aa14.35□□□□□ -0.11
CLIP1-215ENST00000541108 TPTE2P1Q5T6R2 138 aa14.35□□□□□ -0.11
CLIP1-215ENST00000541108 KRTAP1-3Q8IUG1 177 aa14.35□□□□□ -0.11
CLIP1-215ENST00000541108 DMBX1Q8NFW5 382 aa14.35□□□□□ -0.11
CLIP1-215ENST00000541108 OR1S1Q8NH92 325 aa14.35□□□□□ -0.11
CLIP1-215ENST00000541108 FLYWCH2Q96CP2 140 aaKnown RBP14.35□□□□□ -0.11
CLIP1-215ENST00000541108 RHOVQ96L33 236 aa14.35□□□□□ -0.11
CLIP1-215ENST00000541108 CTNNBIP1Q9NSA3 81 aaPredicted RBP14.35□□□□□ -0.11
CLIP1-215ENST00000541108 TBL2Q9Y4P3 447 aaKnown RBP14.35□□□□□ -0.11
CLIP1-215ENST00000541108 POMT1Q9Y6A1 747 aa14.35□□□□□ -0.11
CLIP1-215ENST00000541108 VPS13CQ709C8 3753 aa14.35□□□□□ -0.11
CLIP1-215ENST00000541108 FXYD6-FXYD2A0A087WZ82 144 aa14.34□□□□□ -0.11
CLIP1-215ENST00000541108 FAM90A26D6RGX4 464 aa14.34□□□□□ -0.11
CLIP1-215ENST00000541108 H0YIZ8 118 aa14.34□□□□□ -0.11
CLIP1-215ENST00000541108 DEDDO75618 318 aa14.34□□□□□ -0.11
CLIP1-215ENST00000541108 MIDNQ504T8 468 aa14.34□□□□□ -0.11
CLIP1-215ENST00000541108 LAMTOR1Q6IAA8 161 aa14.34□□□□□ -0.11
CLIP1-215ENST00000541108 OR8H3Q8N146 312 aa14.34□□□□□ -0.11
CLIP1-215ENST00000541108 C9orf62Q8N4C0 152 aa14.34□□□□□ -0.11
CLIP1-215ENST00000541108 MBD2Q9UBB5 411 aa14.34□□□□□ -0.11
CLIP1-215ENST00000541108 CACFD1Q9UGQ2 172 aa14.34□□□□□ -0.11
CLIP1-215ENST00000541108 NBPF19A0A087WUL8 3843 aa14.33□□□□□ -0.11
CLIP1-215ENST00000541108 RNF223E7ERA6 249 aa14.33□□□□□ -0.11
CLIP1-215ENST00000541108 K7EPK0 472 aa14.33□□□□□ -0.11
CLIP1-215ENST00000541108 SCGB1D2O95969 90 aa14.33□□□□□ -0.11
CLIP1-215ENST00000541108 S100A10P60903 97 aa14.33□□□□□ -0.11
CLIP1-215ENST00000541108 LGALSLQ3ZCW2 172 aaPredicted RBP14.33□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms