RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 DEFB136Q30KP8 78 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 PPP1R27Q86WC6 154 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 ANKRD13BQ86YJ7 626 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 SAMD12Q8N8I0 201 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 BVESQ8NE79 360 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 DUX3Q96PT4 197 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 NECAP2Q9NVZ3 263 aa11.04□□□□□ -0.64
USP28-209ENST00000540925 RBMX2Q9Y388 322 aaKnown RBP11.04□□□□□ -0.64
USP28-209ENST00000540925 PRB2P02812 416 aaPredicted RBP11.03□□□□□ -0.64
USP28-209ENST00000540925 NAT1P18440 290 aa11.03□□□□□ -0.64
USP28-209ENST00000540925 CBX5P45973 191 aa11.03□□□□□ -0.64
USP28-209ENST00000540925 ALDH3B2P48448 385 aa11.03□□□□□ -0.64
USP28-209ENST00000540925 RPL30P62888 115 aaKnown RBP11.03□□□□□ -0.64
USP28-209ENST00000540925 PLGLAQ15195 96 aa11.03□□□□□ -0.64
USP28-209ENST00000540925 MSMO1Q15800 293 aa11.03□□□□□ -0.64
USP28-209ENST00000540925 RTL8BQ17RB0 113 aa11.03□□□□□ -0.64
USP28-209ENST00000540925 REC114Q7Z4M0 266 aa11.03□□□□□ -0.64
USP28-209ENST00000540925 S100A16Q96FQ6 103 aaKnown RBP11.03□□□□□ -0.64
USP28-209ENST00000540925 HARBI1Q96MB7 349 aa11.03□□□□□ -0.64
USP28-209ENST00000540925 CMTM3Q96MX0 182 aa11.03□□□□□ -0.64
USP28-209ENST00000540925 CLCC1Q96S66 551 aa11.03□□□□□ -0.64
USP28-209ENST00000540925 FAM103A1Q9BTL3 118 aaKnown RBP11.03□□□□□ -0.64
USP28-209ENST00000540925 NAA50Q9GZZ1 169 aaKnown RBP11.03□□□□□ -0.64
USP28-209ENST00000540925 GNB4Q9HAV0 340 aa11.03□□□□□ -0.64
USP28-209ENST00000540925 FOXA2Q9Y261 457 aaPredicted RBP11.03□□□□□ -0.64
USP28-209ENST00000540925 RBM7Q9Y580 266 aaKnown RBP11.03□□□□□ -0.64
USP28-209ENST00000540925 KMT2CQ8NEZ4 4911 aaKnown RBP11.03□□□□□ -0.64
USP28-209ENST00000540925 EIF4EP06730 217 aaKnown RBP11.02□□□□□ -0.65
USP28-209ENST00000540925 TAS2R20P59543 309 aa11.02□□□□□ -0.65
USP28-209ENST00000540925 KRTAP10-11P60412 298 aa11.02□□□□□ -0.65
USP28-209ENST00000540925 UBE2KP61086 200 aa11.02□□□□□ -0.65
USP28-209ENST00000540925 ECSCRQ19T08 205 aa11.02□□□□□ -0.65
USP28-209ENST00000540925 ASPHD1Q5U4P2 390 aa11.02□□□□□ -0.65
USP28-209ENST00000540925 OSR1Q8TAX0 266 aaPredicted RBP11.02□□□□□ -0.65
USP28-209ENST00000540925 ARPC1AQ92747 370 aa11.02□□□□□ -0.65
USP28-209ENST00000540925 AURKAIP1Q9NWT8 199 aaPredicted RBP11.02□□□□□ -0.65
USP28-209ENST00000540925 VSIG4Q9Y279 399 aa11.02□□□□□ -0.65
USP28-209ENST00000540925 TNCP24821 2201 aa11.02□□□□□ -0.65
USP28-209ENST00000540925 A0A1W2PN81 502 aa11.01□□□□□ -0.65
USP28-209ENST00000540925 J3QRK9 145 aa11.01□□□□□ -0.65
USP28-209ENST00000540925 SHOXO15266 292 aa11.01□□□□□ -0.65
USP28-209ENST00000540925 CRYZL1O95825 349 aa11.01□□□□□ -0.65
USP28-209ENST00000540925 APOA1P02647 267 aa11.01□□□□□ -0.65
USP28-209ENST00000540925 AADACP22760 399 aa11.01□□□□□ -0.65
USP28-209ENST00000540925 CHRNA7P36544 502 aa11.01□□□□□ -0.65
USP28-209ENST00000540925 ARPC4P59998 168 aa11.01□□□□□ -0.65
USP28-209ENST00000540925 TMEM267Q0VDI3 215 aaPredicted RBP11.01□□□□□ -0.65
USP28-209ENST00000540925 FXYD3Q14802 87 aa11.01□□□□□ -0.65
USP28-209ENST00000540925 TMEM69Q5SWH9 247 aa11.01□□□□□ -0.65
USP28-209ENST00000540925 TEX45Q8NA69 505 aa11.01□□□□□ -0.65
USP28-209ENST00000540925 LFNGQ8NES3 379 aa11.01□□□□□ -0.65
USP28-209ENST00000540925 OR5AP2Q8NGF4 316 aa11.01□□□□□ -0.65
USP28-209ENST00000540925 OR5M8Q8NGP6 311 aa11.01□□□□□ -0.65
USP28-209ENST00000540925 GIMAP1Q8WWP7 306 aa11.01□□□□□ -0.65
USP28-209ENST00000540925 MRPS26Q9BYN8 205 aaKnown RBP11.01□□□□□ -0.65
USP28-209ENST00000540925 A3GALT2U3KPV4 340 aa11.01□□□□□ -0.65
USP28-209ENST00000540925 BRI3O95415 125 aa11□□□□□ -0.65
USP28-209ENST00000540925 PPYP01298 95 aa11□□□□□ -0.65
USP28-209ENST00000540925 FCGR2CP31995 323 aa11□□□□□ -0.65
USP28-209ENST00000540925 GNB1P62873 340 aa11□□□□□ -0.65
USP28-209ENST00000540925 PRSS8Q16651 343 aa11□□□□□ -0.65
USP28-209ENST00000540925 ACTBL2Q562R1 376 aa11□□□□□ -0.65
USP28-209ENST00000540925 PYHIN1Q6K0P9 492 aa11□□□□□ -0.65
USP28-209ENST00000540925 TMEM65Q6PI78 240 aa11□□□□□ -0.65
USP28-209ENST00000540925 UNQ5815/PRO19632Q6UWF5 114 aa11□□□□□ -0.65
USP28-209ENST00000540925 KCTD9Q7L273 389 aa11□□□□□ -0.65
USP28-209ENST00000540925 ACOT12Q8WYK0 555 aa11□□□□□ -0.65
USP28-209ENST00000540925 HSD17B10Q99714 261 aaKnown RBP11□□□□□ -0.65
USP28-209ENST00000540925 MCRIP2Q9BUT9 160 aaKnown RBP11□□□□□ -0.65
USP28-209ENST00000540925 MEIS3P1A6NDR6 274 aa10.99□□□□□ -0.65
USP28-209ENST00000540925 FCGR3BO75015 233 aa10.99□□□□□ -0.65
USP28-209ENST00000540925 CBX3Q13185 183 aa10.99□□□□□ -0.65
USP28-209ENST00000540925 CDK10Q15131 360 aa10.99□□□□□ -0.65
USP28-209ENST00000540925 DHRS11Q6UWP2 260 aa10.99□□□□□ -0.65
USP28-209ENST00000540925 ZNF66Q6ZN08 573 aa10.99□□□□□ -0.65
USP28-209ENST00000540925 MFSD4AQ8N468 514 aa10.99□□□□□ -0.65
USP28-209ENST00000540925 OR11H1Q8NG94 326 aa10.99□□□□□ -0.65
USP28-209ENST00000540925 GRPEL2Q8TAA5 225 aa10.99□□□□□ -0.65
USP28-209ENST00000540925 GPX8Q8TED1 209 aa10.99□□□□□ -0.65
USP28-209ENST00000540925 CASTOR1Q8WTX7 329 aa10.99□□□□□ -0.65
USP28-209ENST00000540925 GPR61Q9BZJ8 451 aa10.99□□□□□ -0.65
USP28-209ENST00000540925 CCL28Q9NRJ3 127 aa10.99□□□□□ -0.65
USP28-209ENST00000540925 COMMD3Q9UBI1 195 aa10.99□□□□□ -0.65
USP28-209ENST00000540925 COL7A1Q02388 2944 aa10.98□□□□□ -0.65
USP28-209ENST00000540925 H3BUA1 57 aa10.98□□□□□ -0.65
USP28-209ENST00000540925 FCER2P06734 321 aa10.98□□□□□ -0.65
USP28-209ENST00000540925 LGALS1P09382 135 aaKnown RBP10.98□□□□□ -0.65
USP28-209ENST00000540925 SAA1P0DJI8 122 aaPredicted RBP10.98□□□□□ -0.65
USP28-209ENST00000540925 ELK1P19419 428 aa10.98□□□□□ -0.65
USP28-209ENST00000540925 RORCP51449 518 aa10.98□□□□□ -0.65
USP28-209ENST00000540925 DYRK1AQ13627 763 aa10.98□□□□□ -0.65
USP28-209ENST00000540925 VMA21Q3ZAQ7 101 aa10.98□□□□□ -0.65
USP28-209ENST00000540925 GPR107Q5VW38 600 aa10.98□□□□□ -0.65
USP28-209ENST00000540925 IDO2Q6ZQW0 420 aa10.98□□□□□ -0.65
USP28-209ENST00000540925 LYSMD2Q8IV50 215 aa10.98□□□□□ -0.65
USP28-209ENST00000540925 ZBTB34Q8NCN2 500 aa10.98□□□□□ -0.65
USP28-209ENST00000540925 ABHD5Q8WTS1 349 aa10.98□□□□□ -0.65
USP28-209ENST00000540925 RHOVQ96L33 236 aa10.98□□□□□ -0.65
USP28-209ENST00000540925 TMEM68Q96MH6 324 aa10.98□□□□□ -0.65
USP28-209ENST00000540925 GPHA2Q96T91 129 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms