RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 WFDC3Q8IUB2 231 aa8.72□□□□□ -1.01
CLSTN3-209ENST00000539982 OR13C5Q8NGS8 318 aa8.72□□□□□ -1.01
CLSTN3-209ENST00000539982 UFD1Q92890 307 aa8.72□□□□□ -1.01
CLSTN3-209ENST00000539982 SULT4A1Q9BR01 284 aa8.72□□□□□ -1.01
CLSTN3-209ENST00000539982 FAAP24Q9BTP7 215 aa8.72□□□□□ -1.01
CLSTN3-209ENST00000539982 FUNDC2Q9BWH2 189 aa8.72□□□□□ -1.01
CLSTN3-209ENST00000539982 GGTLC1Q9BX51 225 aa8.72□□□□□ -1.01
CLSTN3-209ENST00000539982 C11orf54Q9H0W9 315 aaPredicted RBP8.72□□□□□ -1.01
CLSTN3-209ENST00000539982 BABAM2Q9NXR7 383 aa8.72□□□□□ -1.01
CLSTN3-209ENST00000539982 COA4Q9NYJ1 87 aa8.72□□□□□ -1.01
CLSTN3-209ENST00000539982 TECRQ9NZ01 308 aaKnown RBP8.72□□□□□ -1.01
CLSTN3-209ENST00000539982 RSL24D1Q9UHA3 163 aaKnown RBP8.72□□□□□ -1.01
CLSTN3-209ENST00000539982 LOC102724200A0A096LPH7 203 aaPredicted RBP8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 ZNF701M0R085 212 aaPredicted RBP8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 BMPR1BO00238 502 aa8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 RBMXL2O75526 392 aaKnown RBP8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 CRYGBP07316 175 aa8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 FOLR2P14207 255 aa8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 CEACAM6P40199 344 aa8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 TMBIM6P55061 237 aa8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 LINC00205P59089 165 aa8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 TPBGQ13641 420 aa8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 SSX1Q16384 188 aa8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 Q499Y3 187 aa8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 ZNF383Q8NA42 475 aa8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 EDARADDQ8WWZ3 215 aa8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 FAM46BQ96A09 425 aa8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 SMIM19Q96E16 107 aa8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 WDR89Q96FK6 387 aaPredicted RBP8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 NEDD4LQ96PU5 975 aa8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 HECTD4Q9Y4D8 3996 aa8.71□□□□□ -1.02
CLSTN3-209ENST00000539982 C2orf70A6NJV1 201 aa8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 GABARAPO95166 117 aa8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 NAPSAO96009 420 aa8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 LALBAP00709 142 aa8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 IGLV2-23P01705 113 aa8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 APOA2P02652 100 aa8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 ATF4P18848 351 aaPredicted RBP8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 ZBTB25P24278 435 aa8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 RPS11P62280 158 aaKnown RBP eCLIP8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 ATP5G2Q06055 141 aa8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 YIF1BQ5BJH7 314 aa8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 LIPKQ5VXJ0 399 aa8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 ZNF880Q6PDB4 577 aa8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 LYG2Q86SG7 212 aa8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 ZFP41Q8N8Y5 198 aa8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 ADAD2Q8NCV1 583 aaKnown RBP8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 RAB2BQ8WUD1 216 aa8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 PTX4Q96A99 478 aa8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 BCL7BQ9BQE9 202 aa8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 NDUFB11Q9NX14 153 aa8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 GHRLQ9UBU3 117 aa8.7□□□□□ -1.02
CLSTN3-209ENST00000539982 TRBV5-7A0A0A0MS05 114 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 PNMA8CA0A1B0GUJ8 204 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 A0A1W2PPK0 400 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 MSGN1A6NI15 193 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 FAM223BA6NKX1 122 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 H3BMQ9 156 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 OR9G9P0C7N8 305 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 CELP19835 753 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 GADD45AP24522 165 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 BMI1P35226 326 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 RHOGP84095 191 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 TIMM50Q3ZCQ8 353 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 C6orf201Q7Z4U5 140 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 FAM223AQ8IWN6 122 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 SETD6Q8TBK2 473 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 THRSPQ92748 146 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 PHB2Q99623 299 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 NAA50Q9GZZ1 169 aaKnown RBP8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 CHMP1AQ9HD42 196 aaPredicted RBP8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 AKIP1Q9NQ31 210 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 OR1A1Q9P1Q5 309 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 ZNF230Q9UIE0 474 aaPredicted RBP8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 ZNF221Q9UK13 617 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 TP53TG1Q9Y2A0 90 aa8.69□□□□□ -1.02
CLSTN3-209ENST00000539982 TRBV9A0A0B4J1U6 114 aa8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 LGALS9O00182 355 aa8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 SPRY2O43597 315 aa8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 TUSC2O75896 110 aa8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 CD1AP06126 327 aa8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 APELAP0DMC3 54 aa8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 EDN2P20800 178 aa8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 CBLN1P23435 193 aa8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 PSMA1P25786 263 aaKnown RBP8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 RPS25P62851 125 aaKnown RBP8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 EXOSC2Q13868 293 aaKnown RBP8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 CTF1Q16619 201 aa8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 ANKRD55Q3KP44 614 aa8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 Q6ZWC4 215 aa8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 MOB1BQ7L9L4 216 aa8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 OR52B4Q8NGK2 314 aa8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 KCNG3Q8TAE7 436 aa8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 UQCC2Q9BRT2 126 aa8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 OR51E2Q9H255 320 aa8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 RIMS4Q9H426 269 aaPredicted RBP8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 SLC35D1Q9NTN3 355 aa8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 DMRT1Q9Y5R6 373 aa8.68□□□□□ -1.02
CLSTN3-209ENST00000539982 TRBV6-6A0A0A6YYG2 114 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms